BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37930.1
Length=1899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490821 jgi|Araly1|490821|fgenesh2_kg.7__254__AT4G37930.1 2942 0.0
Ahg489509 jgi|Araly1|489509|fgenesh2_kg.6__2643__AT5G26780.3 876 0.0
> Ahg490821 jgi|Araly1|490821|fgenesh2_kg.7__254__AT4G37930.1
Length=1850
Score = 2942 bits (1593), Expect = 0.0
Identities = 1777/1861 (95%), Gaps = 32/1861 (2%)
Strand=Plus/Plus
Query 1 AAAAGAGGGAAAAAATTCGAAAATTTGCTGCAACCACCAAAAGCTCAGCCAAAAGCAGAG 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 AAAAGAGGGAAAAAATTCGAAAATTTTCTGCAACCACCAAAAGCTCAGCCAAAAGCAGAG 60
Query 61 GCCACAA-T-TCTC-TCA------AACAAGATAAACCCAATTTTGTTATTTTTGTtctct 111
||||||| | |||| ||| |||||||||||||||||||| || || | |
Sbjct 61 GCCACAATTCTCTCTTCATCTCTCCACAAGATAAACCCAATTTTG------TT-TT-T-T 111
Query 112 cttctctctcGTTCATGTTTCAAATCTGTTTCTAGGGTTTCACAAACC----AGAGATAG 167
|| | | | |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 112 -TT-T-T-T-GTTCATGTTTCAAATCTGTTTCTAGGGTTTCACAAACCAGAGAGAGAGAG 166
Query 168 AGAGAGGTTTAGCGAAAAATGGCGATGGCCATGGCTCTTCGAAGGCTTTCTTCTTCAATT 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 AGAGAGGTTTAGCGAAAAATGGCGATGGCCATGGCTCTTCGAAGGCTTTCTTCTTCAATT 226
Query 228 GACAAACCCATTCGTCCTCTTATTC-GATCCACTTCATGTTACATGTCTTCTTTGCCCAG 286
|||||||||||||||||||||| || |||||||||| |||||||||||||| ||||||||
Sbjct 227 GACAAACCCATTCGTCCTCTTA-TCAGATCCACTTCTTGTTACATGTCTTCGTTGCCCAG 285
Query 287 TGAAGCTGTTGATGAGAAGGAAAGATCTCGTGTCACTTGGCCAAAACAGCTTAACGCACC 346
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 286 TGAAGCTGTTGATGAGAAGGAGAGGTCTCGTGTCACTTGGCCAAAACAGCTTAACGCACC 345
Query 347 TTTAGAGGAGGTTGATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATG 406
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TTTAGAGGAGGTTGACCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATG 405
Query 407 GAAGGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAAGCTGT 466
|||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 406 GAAGGGACTTGAGCTTATTCCATCTGAGAACTTCACATCTGTTTCCGTGATGCAAGCTGT 465
Query 467 TGGGTCTGTCATGACTAACAAATACAGTGAAGGCTATCCTGGTGCCAGATACTATGGAGG 526
||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 466 TGGGTCTGTGATGACTAACAAATATAGTGAAGGGTATCCTGGTGCGAGATACTATGGAGG 525
Query 527 AAATGAGTATATAGACATGGCAGAAACCTTATGCCAGAAGCGCGCTCTTGAAGCTTTCCG 586
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 AAATGAGTACATAGACATGGCAGAAACCTTATGCCAGAAGCGCGCTCTTGAAGCTTTCCG 585
Query 587 GTTAGATCCTGAAAAGTGGGGAGTGAATGTTCAACCTTTGTCTGGATCTCCTGCCAACTT 646
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 586 GTTAGATCCTGAAAAGTGGGGAGTGAATGTGCAACCTTTGTCTGGATCTCCTGCCAACTT 645
Query 647 CCATGTGTACACTGCATTGTTAAAGCCTCATGAAAGAATCATGGCACTTGATCTTCCTCA 706
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 646 CCATGTCTACACTGCATTGTTAAAGCCTCATGAAAGAATCATGGCTCTTGATCTTCCTCA 705
Query 707 TGGTGGTCATCTTTCTCATGGTTATCAGACTGACACCAAGAAGATATCAGCTGTGTCTAT 766
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 706 TGGTGGTCATCTTTCTCATGGTTATCAGACTGACACCAAGAAGATATCTGCTGTGTCTAT 765
Query 767 CTTCTTTGAAACAATGCCCTATAGATTGGACGAGAGCACTGGCTACATCGACTACGATCA 826
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 766 CTTCTTTGAAACAATGCCTTATCGATTGGACGAGAGCACTGGCTACATCGACTACGATCA 825
Query 827 GATGGAGAAAAGTGCTACTCTTTTCAGGCCAAAATTGATTGTTGCTGGTGCAAGTGCTTA 886
|||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 826 GATGGAGAAAAGCGCTACTCTTTTCAGGCCAAAACTGATTGTTGCTGGTGCGAGTGCTTA 885
Query 887 TGCTAGATTGTATGACTATGCCCGCATCAGAAAGGTCTGTAACAAGCAAAAAGCTGTAAT 946
|||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 886 TGCTCGATTGTATGATTATGCCCGCATCCGAAAGGTCTGTAACAAGCAAAAAGCTGTAAT 945
Query 947 GCTAGCAGATATGGCACACATCAGTGGTTTGGTTGCTGCTAATGTAATCCCTTCACCGTT 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 GCTAGCAGATATGGCACACATCAGTGGTTTGGTTGCTGCTAATGTAATCCCTTCACCGTT 1005
Query 1007 CGACTATGCTGATGTTGTAACCACCACAACTCACAAGTCACTTCGTGGACCCCGTGGAGC 1066
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1006 CGACTATGCTGATGTTGTAACCACCACAACCCACAAGTCACTTCGTGGACCCCGTGGAGC 1065
Query 1067 CATGATTTTCTTCAGAAAGGGTGTTAAGGAAATTAACAAGCAAGGGAAAGAGGTTTTGTA 1126
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1066 CATGATTTTCTTCAGAAAGGGTGTTAAGGAAATTAACAAACAAGGGAAAGAGGTTTTGTA 1125
Query 1127 TGATTTTGAAGACAAGATCAACCAAGCTGTCTTCCCTGGTCTTCAAGGTGGTCCACACAA 1186
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1126 TGATTTTGAAGACAAGATCAATCAAGCTGTCTTCCCTGGTCTTCAAGGTGGACCACACAA 1185
Query 1187 CCACACTATCACAGGACTAGCTGTTGCTTTGAAACAGGCAACTACTTCAGAGTACAAAGC 1246
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 CCACACTATTACAGGATTAGCTGTTGCTTTGAAACAGGCAACTACTTCAGAGTACAAAGC 1245
Query 1247 ATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGACTCTAATGGAGAGAGG 1306
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1246 ATACCAAGAGCAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGACTCTGATGGAGAAAGG 1305
Query 1307 ATATGAACTTGTTTCTGGTGGAACTGACAACCATCTGGTTCTAGTGAATCT-AAAGCCCA 1365
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1306 ATATGAACTTGTTTCTGGTGGAACTGACAACCATCTGGTTCTAGTGAATCTGAAA-CCCA 1364
Query 1366 AGGGAATTGATGGATCTAGAGTTGAGAAAGTGTTGGAAGCTGTTCACATTGCATCCAACA 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 AGGGAATTGATGGATCTAGAGTTGAGAAAGTGTTGGAAGCTGTTCACATTGCATCCAACA 1424
Query 1426 AAAACACTGTTCCTGGAGATGTTTCTGCCATGGTTCCTGGTGGAATCAGAATGGGTACTC 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 AAAACACTGTTCCTGGAGATGTTTCTGCCATGGTTCCTGGTGGAATCAGAATGGGTACTC 1484
Query 1486 CTGCTCTCACTTCCAGAGGCTTTGTTGAGGAAGACTTTGCCAAAGTAGCTGAATACTTCG 1545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 CTGCTCTCACTTCCAGAGGCTTTGTTGAGGAAGACTTTGCCAAAGTAGCTGAATACTTCG 1544
Query 1546 ACAAAGCTGTGACAATAGCTCTCAAAGTCAAATCTGAAGCTCAAGGAACCAAGTTGAAGG 1605
|||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1545 ACAAAGCTGTGACATTGGCTCTCAAAGTCAAATCTGAAGCTCAAGGAACCAAGCTGAAGG 1604
Query 1606 ATTTCGTGTCAGCAATGGAATCCTCTTCAACCATCCAATCCGAGATTGCGAAACTGCGCC 1665
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1605 ATTTTGTGTCAGCAATGGAATCTTCTTCAACCATTCAATCCGAGATTGCGAAACTGCGCC 1664
Query 1666 ATGAAGTCGAGGAATTCGCTAAGCAGTTCCCAACAATTGGGTTTGAGAAAGAAACCATGA 1725
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1665 ATGAAGTCGAGGAGTTCGCTAAGCAGTTCCCAACAATTGGTTTTGAGAAAGAAACCATGA 1724
Query 1726 AGTACAAGAACTAAACTGTTTCACCCCACAAGTGTTTTCTGTTATGCTTTGAATTCCCAT 1785
||||||||||||||||||||| | ||||||||| |||| | | |||||||||||||||||
Sbjct 1725 AGTACAAGAACTAAACTGTTTTATCCCACAAGTCTTTTTTATCATGCTTTGAATTCCCAT 1784
Query 1786 GGAATGTATAGATGATACATGTAAAACTCTATTTTCACGCTATGCGAAAAATAATGATCT 1845
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1785 GGAATGTATAGATGATACATGTAAAACACTATTTT-ACGCTATGCGAAAAATAATGATCT 1843
Query 1846 G 1846
|
Sbjct 1844 G 1844
> Ahg489509 jgi|Araly1|489509|fgenesh2_kg.6__2643__AT5G26780.3
Length=1920
Score = 876 bits (474), Expect = 0.0
Identities = 1093/1386 (79%), Gaps = 66/1386 (5%)
Strand=Plus/Plus
Query 390 GAGAAAGCTAGACAATGGAAGGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTG 449
||||||||||| |||||||||||| |||||||||| || || ||||| ||||| ||| |
Sbjct 256 GAGAAAGCTAGGCAATGGAAGGGATTTGAACTTATACCTTCAGAGAATTTCACCTCTCTC 315
Query 450 TCGGTGATGCAAGCTGTTGGGTCTGTCATGACTAACAAATACAGTGAAGGCTATCCTGGT 509
||||| |||||||| ||||| || || |||||||| || || |||||||| |||||||||
Sbjct 316 TCGGTTATGCAAGCGGTTGGTTCGGTTATGACTAATAAGTATAGTGAAGGATATCCTGGT 375
Query 510 GCCAGATACTATGGAGGAAATGAGTATATAGACATGGCAGAAACCTTATGCCAGAAGCGC 569
|| ||||||||||||||||||||||| || |||||||| || | ||||| || || |||
Sbjct 376 GCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGTCATTATGTCAAAAACGC 435
Query 570 GCTCTT-GAAGCTTTCCGGTTAGATCC-T-GAAAAGTGGGGAGTGAATGTTCAACCTTTG 626
|| || |||||||| | ||||||||| | | ||| |||||||| ||||| || ||||
Sbjct 436 GC-ATTAGAAGCTTTTCAGTTAGATCCTTCG-AAA-TGGGGAGTCAATGTGCAGTCTTTA 492
Query 627 TCTGGATCTCCTGCCAACTTCCATGTGTACACTGCATTGTTAAAGCCTCATGAAAGAATC 686
|| ||||| || || |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 493 TCAGGATCACCAGCTAACTTCCAAGTTTACACTGCATTGTTAAAGCCTCATGAAAGAATC 552
Query 687 ATGGCACTTGATCTT-CCTCATGGTGGTCATCTTTCTCATGGTTATCAGACTGACACCAA 745
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 553 ATGGCACTTGAT-TTACCTCATGGTGGACATCTTTCTCATGGTTATCAGACTGACACGAA 611
Query 746 GAAGATATCAGCTGTGTCTATCTTCTTTGAAACAATGCCCTATAGATTGGACGAGAGCAC 805
||| ||||| ||||| || ||||| ||||| |||||||| || |||||||| |||| |||
Sbjct 612 GAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACAC 671
Query 806 TGGCTACATCGACTACGATCAGATGGAGAAAAGTGCTACT-CTTTTCAGGCCAAAA-TTG 863
||| ||||| || ||||||||| | || |||||||| | |||||||| || ||| ||
Sbjct 672 TGGTTACATTGATTACGATCAGCTAGAAAAAAGTGCGG-TGCTTTTCAGACCCAAACTT- 729
Query 864 ATTGTTGCTGGTGCAAGTGCTTATGCTAGAT-TGTATGACTATGCCCGCAT-CAGAAAGG 921
|||||||| |||||||||||||||||| | | | ||||| ||||| || || | | ||||
Sbjct 730 ATTGTTGCGGGTGCAAGTGCTTATGCTCG-TCTATATGATTATGCACGTATTC-GTAAGG 787
Query 922 TCTGTAACAAGCAAAAAGCTGTAATGCTAGCAGATATGGCACACATCAGTGGTTTGGTTG 981
| ||| |||||||||| || || ||||| || |||||||| || || ||||| |||||||
Sbjct 788 TTTGTGACAAGCAAAAGGCAGTTATGCTGGCTGATATGGCTCATATTAGTGGGTTGGTTG 847
Query 982 CTGCTAATGTAATCCCTTCACCGTTCGACTATGCTGATGTTGTAACCACCACAACTCACA 1041
||||| || || ||||| || || || ||||| |||||||| || || ||||||||||
Sbjct 848 CTGCTGGCGTTATTCCTTCTCCTTTTGAGTATGCAGATGTTGTTACAACTACAACTCACA 907
Query 1042 AGTCACTTCGTGGACCCCGTGGAGCCATGATTTTCTTCAGAAAGGGTGTTAAG-GAAATT 1100
| || ||||| || || | || || ||||| ||||| || ||||| ||||| || |||
Sbjct 908 AATCGCTTCGCGGTCCTAGAGGGGCTATGATATTCTTTAGGAAGGG-GTTAAAAGAGATT 966
Query 1101 AACAAGCAAGGGAAAGAGGTTTTGTATGATTTTGAAGACAAGA-TCAACCAAGCTGTCTT 1159
||||| |||||||||||||| ||||||| | ||| |||| || | ||||||||||| ||
Sbjct 967 AACAAACAAGGGAAAGAGGTCATGTATGACTATGAGGACA-GAATTAACCAAGCTGTTTT 1025
Query 1160 CCCTGGTCTTCAAGGTGGTCCACACAACCACACTATCACAGGACTAGCTGTTGCTTTGAA 1219
||||| || |||||||||||||| || |||||||| || || ||||| |||||| ||||
Sbjct 1026 TCCTGGACTGCAAGGTGGTCCACATAATCACACTATAACGGGTCTAGCAGTTGCTCTGAA 1085
Query 1220 ACAGGCAACTACTTCAGAGTACAAAGCATACCAAGAACAAGTCCTGAGTAACAG-TGCAA 1278
||||| | || | ||||| || || ||||| || ||||| || |||| | | |||
Sbjct 1086 GCAGGCGAGAACACCTGAGTATAAGGCCTACCAGGATCAAGTTCTCCGTAATTGCT-CAA 1144
Query 1279 AGTTTGCT---C-----A---GAC-T-CTAAT--G---GAGAGAGGATATGAACTT-GTT 1319
|||||||| | | ||| | || | | | || ||||||||| || ||
Sbjct 1145 AGTTTGCTGAGCTGGGTATAAGACCTACTTCTTTGCTTGCGAAAGGATATGAT-TTAGTG 1203
Query 1320 TCTGGTGGAACTGACAACCATCTGGTTCTAGTGAATCT-AAAGCCCAAGGGAATTGATGG 1378
||||| || ||||| || ||| | ||| | |||||||| ||| | |||||||| |||||
Sbjct 1204 TCTGGAGGCACTGAGAATCATTTAGTTTTGGTGAATCTGAAAAAC-AAGGGAATAGATGG 1262
Query 1379 ATCTAGAGTTGAGAAAGTGTTGGAAGCTGTTCACATTGCATCCAACAAAAACACTGTTCC 1438
||| ||||| || ||||| || ||| | || || |||||| | ||||| || ||||||||
Sbjct 1263 ATCAAGAGTGGAAAAAGTATTAGAATCAGTACATATTGCAGCAAACAAGAATACTGTTCC 1322
Query 1439 TGGAGATGTTTCTGCCATGGTTCCTGGTGGAATCAGAATGGGTACTCCTGCTCTCACTTC 1498
||| |||||||||||||||||||| ||||| ||| | ||||| || || || ||||| ||
Sbjct 1323 TGGTGATGTTTCTGCCATGGTTCCAGGTGGCATCCGTATGGGAACACCAGCCCTCACATC 1382
Query 1499 CAGAGGCTTTGTTGAGGAAGACTTTGCCAAAGTAGCTGAATACTTCGACAAAGCTGTGAC 1558
||||| || |||||||||| ||||| ||||| || || || || || ||| || |
Sbjct 1383 AAGAGGATTCATTGAGGAAGATTTTGCAAAAGTGGCGGAGTATTTTGATTTAGCCGTCA- 1441
Query 1559 A-ATAGCTCTCAAAG-TCAAATCTGAAG-CTCAAGGAACCAAGTTGAAGGA-TTTCGT-G 1613
| ||||| || |||| |||| | || | |||||||||| ||||||||||| ||| || |
Sbjct 1442 AGATAGC-CTTAAAGATCAAGGCAGA-GTCTCAAGGAACAAAGTTGAAGGACTTT-GTAG 1498
Query 1614 TCAGCAATGGAATCCTCTTC-AACCATC-CAATCCGAGATTGCGAAACT-GCGCCATGAA 1670
|| ||||| |||| | || || || || ||||| || ||| | ||| | ||
Sbjct 1499 -CAACAATGCAATCAAATGAGAA--ATTACAGTCAGAGATGGC-AAAGTTGCGTGA-GAT 1553
Query 1671 G-TCGAGGAAT-TCGCTAAGCAGTTCCCAACAATTGGGTTTGAGAAAGAAACCATGA-AG 1727
| | || |||| | || ||||| ||||||||||||||||| |||||||| || |||| |
Sbjct 1554 GGTAGAAGAATAT-GCGAAGCAATTCCCAACAATTGGGTTCGAGAAAGAGACGATGAGA- 1611
Query 1728 TACAAG 1733
||||||
Sbjct 1612 TACAAG 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71343028885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5