BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37940.1 Length=715 Score E Sequences producing significant alignments: (Bits) Value Ahg490820 jgi|Araly1|490820|fgenesh2_kg.7__253__AT4G37940.1 1057 0.0 > Ahg490820 jgi|Araly1|490820|fgenesh2_kg.7__253__AT4G37940.1 Length=684 Score = 1057 bits (572), Expect = 0.0 Identities = 641/674 (95%), Gaps = 5/674 (1%) Strand=Plus/Plus Query 1 ATGGGAAGAGGGAAGATTGTGATCCAAAGGATCGATGATTCAACGAGTAGACAAGTCACT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGAAGAGGGAAGATTGTGATCCAAAGGATCGATGATTCAACGAGTAGACAAGTCACT 60 Query 61 TTCTCCAAACGAAGAAAGGGCCTTATCAAGAAAGCCAAAGAGCTAGCTATTCTCTGTGAT 120 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 61 TTCTCCAAACGAAGAAAGGGTCTTATCAAGAAAGCCAAAGAGCTAGCTATTCTCTGCGAC 120 Query 121 GCCGAGGTCGGTCTCATCATCTTCTCTAGCACCGGAAAGCTCTATGACTTTGCAAGCTCC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GCCGAGGTCGGTCTCATCATCTTCTCTAGCACCGGAAAGCTCTATGACTTTGCAAGCTCC 180 Query 181 AGCATGAAGTCGGTTATTGATAGATACAACAAGAGCAAGATCGAGCAACAACAACTATTG 240 || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 181 AGTATGGAGTCGGTTATTGATAGATACAACAAGAGCAAGATCGAGCAACAACAACTAATG 240 Query 241 AACCCCGCATCAGAAGTCAAGTTTTGGCAGAGAGAAGCTGCTGTTCTAAGACAAGAACTG 300 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 241 AACCCCGCATCAGAAGTCAAGTTTTGGCAGAGAGAAGCTGCTGTTCTAAGGCAAGAATTG 300 Query 301 CATGCTTTGCAAGAAAATCATCG--G-CAAATGATGGGAGAACAGCTAAATGGTTTAAGT 357 ||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| Sbjct 301 CATGCTTTGCAAGAAAATCATCGCAGGCAAATGATGGGAGAACAACTAAATGGTTTAAGC 360 Query 358 GTTAACGAGCTAAACAGTCTTGAGAATCAAATTGAGATAAGTTTGCGTGGAATTCGTATG 417 ||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||| Sbjct 361 GTTAACGAGCTAAACAGTCTTGAAAATCAACTTGAAATAAGTTTACGTGGAATTCGTATG 420 Query 418 AGAAAGGAACAACTGTTGACTCAAGAAATCCAAGAACTAAGCCAAAAGAGGAATCTTATT 477 | |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 421 AAAAAGGAACAAATGTTGACTCAAGAAATCCAAGAACTAAGCCAAAAGAGGAATCTCATT 480 Query 478 CATCAGGAAAACCTCGATTTATCTAGGAAAGTACAACGGATTCATCAAGAAAATGTGGAG 537 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CGTCAGGAAAACCTCGATTTATCTAGGAAAGTACAACGGATTCATCAAGAAAATGTGGAG 540 Query 538 CTCTACAAGAAGGCTTATATGGCAAACACAAACGGGTTTACACACCGTGAAG-TAGCTGT 596 ||||||||||||||||||| || ||||||||||||||||| ||| | ||| | ||||||| Sbjct 541 CTCTACAAGAAGGCTTATACGGAAAACACAAACGGGTTTATACATCATGA-GCTAGCTGT 599 Query 597 TGCGGATGATGAATCACACACTCAGATTCGGCTGCAACTAAGCCAGCCTGAACATTCCGA 656 |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 600 CGCGGATGATGAATCACACACTCAGATTCGGCTGCAACTAAGCCAACCTGAGCATTCCGA 659 Query 657 TTATGACACTCCAC 670 |||||| || |||| Sbjct 660 TTATGAGACCCCAC 673 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26304812730 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5