BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37940.1
Length=715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490820 jgi|Araly1|490820|fgenesh2_kg.7__253__AT4G37940.1 1057 0.0
> Ahg490820 jgi|Araly1|490820|fgenesh2_kg.7__253__AT4G37940.1
Length=684
Score = 1057 bits (572), Expect = 0.0
Identities = 641/674 (95%), Gaps = 5/674 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGGGAAGATTGTGATCCAAAGGATCGATGATTCAACGAGTAGACAAGTCACT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGAGGGAAGATTGTGATCCAAAGGATCGATGATTCAACGAGTAGACAAGTCACT 60
Query 61 TTCTCCAAACGAAGAAAGGGCCTTATCAAGAAAGCCAAAGAGCTAGCTATTCTCTGTGAT 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TTCTCCAAACGAAGAAAGGGTCTTATCAAGAAAGCCAAAGAGCTAGCTATTCTCTGCGAC 120
Query 121 GCCGAGGTCGGTCTCATCATCTTCTCTAGCACCGGAAAGCTCTATGACTTTGCAAGCTCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCCGAGGTCGGTCTCATCATCTTCTCTAGCACCGGAAAGCTCTATGACTTTGCAAGCTCC 180
Query 181 AGCATGAAGTCGGTTATTGATAGATACAACAAGAGCAAGATCGAGCAACAACAACTATTG 240
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 AGTATGGAGTCGGTTATTGATAGATACAACAAGAGCAAGATCGAGCAACAACAACTAATG 240
Query 241 AACCCCGCATCAGAAGTCAAGTTTTGGCAGAGAGAAGCTGCTGTTCTAAGACAAGAACTG 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 241 AACCCCGCATCAGAAGTCAAGTTTTGGCAGAGAGAAGCTGCTGTTCTAAGGCAAGAATTG 300
Query 301 CATGCTTTGCAAGAAAATCATCG--G-CAAATGATGGGAGAACAGCTAAATGGTTTAAGT 357
||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 301 CATGCTTTGCAAGAAAATCATCGCAGGCAAATGATGGGAGAACAACTAAATGGTTTAAGC 360
Query 358 GTTAACGAGCTAAACAGTCTTGAGAATCAAATTGAGATAAGTTTGCGTGGAATTCGTATG 417
||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||||||
Sbjct 361 GTTAACGAGCTAAACAGTCTTGAAAATCAACTTGAAATAAGTTTACGTGGAATTCGTATG 420
Query 418 AGAAAGGAACAACTGTTGACTCAAGAAATCCAAGAACTAAGCCAAAAGAGGAATCTTATT 477
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 AAAAAGGAACAAATGTTGACTCAAGAAATCCAAGAACTAAGCCAAAAGAGGAATCTCATT 480
Query 478 CATCAGGAAAACCTCGATTTATCTAGGAAAGTACAACGGATTCATCAAGAAAATGTGGAG 537
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGTCAGGAAAACCTCGATTTATCTAGGAAAGTACAACGGATTCATCAAGAAAATGTGGAG 540
Query 538 CTCTACAAGAAGGCTTATATGGCAAACACAAACGGGTTTACACACCGTGAAG-TAGCTGT 596
||||||||||||||||||| || ||||||||||||||||| ||| | ||| | |||||||
Sbjct 541 CTCTACAAGAAGGCTTATACGGAAAACACAAACGGGTTTATACATCATGA-GCTAGCTGT 599
Query 597 TGCGGATGATGAATCACACACTCAGATTCGGCTGCAACTAAGCCAGCCTGAACATTCCGA 656
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 600 CGCGGATGATGAATCACACACTCAGATTCGGCTGCAACTAAGCCAACCTGAGCATTCCGA 659
Query 657 TTATGACACTCCAC 670
|||||| || ||||
Sbjct 660 TTATGAGACCCCAC 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26304812730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5