BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37950.1
Length=2310
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944044 jgi|Araly1|944044|scaffold_700273.1 2361 0.0
> Ahg944044 jgi|Araly1|944044|scaffold_700273.1
Length=2038
Score = 2361 bits (1278), Expect = 0.0
Identities = 1573/1715 (92%), Gaps = 22/1715 (1%)
Strand=Plus/Plus
Query 503 TTTAGTAGGA-ACAAAATTCGATATTGTAAATCAAACAAGTGAACAAATTGAAATTTCAT 561
|||||||||| | ||||||| |||||||||||||||||||||| || | |||||||| |
Sbjct 323 TTTAGTAGGAGA-AAAATTCAATATTGTAAATCAAACAAGTGAGCATGTCGAAATTTCTT 381
Query 562 TTTCGAGAAC---G--T-TCTCTCAACGGGGCTCAGGAATCCCATTAAACGTAGACAAAC 615
|||||||||| | | ||||||||| ||| ||| |||||||||||||||||||
Sbjct 382 TTTCGAGAACATGGAATATCTCTCAACATACCTCGGGAGCCCCATTAAACGTAGACAAAA 441
Query 616 GATATATTATTCGAAGAGGTGTATCCGGAATATACATGTACGCTGTATTGGAGAGGTTAA 675
||||||| |||||||| ||||| |||||| | |||||||||||||| || ||||| ||||
Sbjct 442 GATATATCATTCGAAGTGGTGTGTCCGGAGTCTACATGTACGCTGTGTTAGAGAGATTAA 501
Query 676 TAGGTTGGCCTGACGTGGACATGGACCAAATCAGAATCGTCTTCAAGCTTAACACAACAA 735
||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 502 AAGGTTGGCCCGACGTGAACATGGACCAAACCAGAATCGTCTTCAAGCTTAACACAACAA 561
Query 736 AATTCGATTTCATGGCTGTTTCCGATAATCGGCAAAAAATAATGCCTTTTG-ATACAGAT 794
||||||||| ||||||| | || ||| |||||| ||||| ||||||| || | ||||||
Sbjct 562 AATTCGATTACATGGCTATATCTGATGGTCGGCAGAAAATTATGCCTTCTGCA-ACAGAT 620
Query 795 CGAGACATTACCAAA--GGTCGTGCCAGTCCATTGGCTTACAAAGAAGCTGTTCATTTGA 852
||||| | | | ||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 621 CGAGATA-T-CAAAACTGGTCGTGCTAGTCCATTGGCTTACAAAGAAGCTGTTCATTTGA 678
Query 853 TAAATCCACAAAATCATATGCTTAAAGGGCAGGTAGACGATAAGTACATGTACTCGGTGG 912
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 679 TAAATCCCCAAAATCATATACTTAAAGGGCAGGTAGACGATAAGTACATGTACTCGATGG 738
Query 913 AAAACAAAGACAACAAAGTACACGGTTGGATATCGTCGGACCAACGT-ATCGGTTTCTGG 971
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||
Sbjct 739 AAAACAAAGACAACAAAGTACACGGTTGGATATCGGCGGACCAACGTGTTGGGTTT-TGG 797
Query 972 ATGATCACGCCCAGCGACGAGTTCCATGCATGTGGGCCGATCAAACAAGATCTCACTTCT 1031
||||| || |||||||| ||||| | | |||||||||| |||||||||||||||||||||
Sbjct 798 ATGATTACTCCCAGCGATGAGTTTCGTTCATGTGGGCCCATCAAACAAGATCTCACTTCT 857
Query 1032 CATGTGGGCCCCACCACTCTTTCGATGTTTACAAGTGTACATTACGCGGGAAAAGATATG 1091
|||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||||||
Sbjct 858 CATGTGGGACCCACCATTCTTTCAATGTTTACAAGTGTACATTACGCGGGAGTAGATATT 917
Query 1092 AACACAAATTATAAAAGCAAGGAACCGTGGAAGAAGGTGTTTGGTCCTGTCTTTGTTTAT 1151
||||||| ||||||||||||||| || |||| |||| ||||||| |||||||||||||||
Sbjct 918 AACACAATTTATAAAAGCAAGGAGCCATGGAGGAAGATGTTTGGCCCTGTCTTTGTTTAT 977
Query 1152 CTCAATTCTGCTTCTTCTCGTAATCTTCTCTGGACCGATGCTAAACGACAGATGGTTTCC 1211
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 CTCAATTCTGCCTCTTCTCGTAATCTTCTCTGGACCGATGCTAAACGACAGATGGTTTCC 1037
Query 1212 GAGGTCCAAAGCTGGCCTTATGATTTCGTGAAATCTGTAGATTACCCTCTTCATCACCAA 1271
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1038 GAGGTCCAAAGTTGGCCTTATGATTTCGTGAAGTCAGTAGATTACCCTCTTCATCACCAA 1097
Query 1272 AGAGGAA-CAGTCAAGGGTC-AATTATTTGTCATAGACAGATACATCAAAAACGTGACGT 1329
||||||| | |||||||||| || | |||||||| || ||||||| ||||| || |||
Sbjct 1098 AGAGGAATC-GTCAAGGGTCGAA-TCTTTGTCATGGAGAGATACAACAAAAGCGAAACGA 1155
Query 1330 ACTTATTCGGGCAATTTGCTTTTGTGGGATTAGCATTACCTGGTGAAGCTGGTTCTTGGC 1389
||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1156 ACTTATTTGGGAAATTTGCTTTTGTGGGATTAGCCTTACCTGGTGAAGCTGGTTCATGGC 1215
Query 1390 AAACCGAAAACAAGGGATATCAATTTTGGACACGAGCAGACAAAAT-GGGAATGTTCACA 1448
|||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct 1216 AAACCGAAAACAAGGGATATCAATTTTGGACACGAGCAGACAAAGTAGGG-ATGTTCACA 1274
Query 1449 ATAGCGAATGTGAGACCAGGGACGTATAGTCTCTACGCATGGGTTTCTGGATTTATCGGT 1508
||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1275 ATAGCGAATGTTAGACCAGGGAAGTATAGTCTCTACGCATGGGTTTCTGGGTTTATCGGT 1334
Query 1509 GACTATAAATATGTGCGTGACATTACCATCACACCAGGTAGGGAGATAGACGTTGGACAC 1568
||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 1335 GACTACAAATATGAGCGTGACATTACCATCACACCAGGTAGGGTGATAGACGTAGGACGC 1394
Query 1569 ATAGTGTACGTGCCACCGAGAAACGGCCCAACACTGTGGGAGATCGGACAACCGGACCGA 1628
|||||||||| |||||||||||| || || || ||||||||||||||| |||| ||||||
Sbjct 1395 ATAGTGTACGAGCCACCGAGAAATGGTCCGACTCTGTGGGAGATCGGAGAACCAGACCGA 1454
Query 1629 ACCGCGGCAGAATTCTATATCCCAGATCCGGACCCAACCCTTTTCACCAAACTTTATCTA 1688
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1455 ACCGCCGCAGAATTCTATATCCCAGATCCGGACCCAACCCTTTTGACCAAACTCTATCTA 1514
Query 1689 AATTACTCAAATCCTCAAGATAGATTTAGACAGTATGGTCTATGGGATCGTTACAGTGTT 1748
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1515 AATTACTCAAATCCTCAAGACAGATTTAGACAATATGGTCTATGGGATCGTTACAGTGTT 1574
Query 1749 TTGTATCCTCGAAACGATCTTGTTTTTACTGCTGGAGTGAGTGACTATAAAAAAGACTGG 1808
|||||||||||||| |||||| |||||||| || |||| ||||||| |||||||||||||
Sbjct 1575 TTGTATCCTCGAAAAGATCTTATTTTTACTACTAGAGTAAGTGACTTTAAAAAAGACTGG 1634
Query 1809 TTCTATGCCCATGTCAACAGGAAAGCTGGAAATGGGACATATAAAGCAACGACATGGCAA 1868
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1635 TTCTATGCCCATGTCAACAGGAAAGCTGGAAATGGGACATATAAAGCAACAACATGGCAA 1694
Query 1869 ATTAAGTTTAATTTGAAAGCAGTGATTCAAACTAGAATATACACACTTCGAATAGCTTTG 1928
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1695 ATTAAGTTTAATTTAAAAGCAGTGATTCAAACTAGAATCTACACACTTCGAATAGCTTTG 1754
Query 1929 GCTGCAGCCTCAACAATTGATCTACTGGTTTGGGTCAACGAAGTTGATTCCAAACCTCTA 1988
||||||||| |||| | ||||||| |||||||||||||| ||| | |||||||||| |||
Sbjct 1755 GCTGCAGCCACAACTACTGATCTAGTGGTTTGGGTCAACCAAGCTAATTCCAAACCCCTA 1814
Query 1989 TTCATAACTGGGCTAATCGGTCGGGATAACGCGATCGCGAGGCATGGGATTCATGGGTTG 2048
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1815 TTCATAACTGGGCTAATAGGTCGGGATAACGCGATCGCCAGGCATGGGATTCATGGGTTG 1874
Query 2049 TACAAATTGTACAATATCGATGTTCATGGAAAGTTACTTAGGGTTGGTAATAATACTATT 2108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1875 TACAAATTGTACAATATCGATGTTCATGGAAAGTTACTTAGGGTTGGTAATAATACTATT 1934
Query 2109 TTTCTTACTCATGGTCGGAACTCTGATTCTTTTTCAGGTGTAATGTATGATTATCTTCGT 2168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1935 TTTCTTACTCATGGTCGGAACTCTGATTCTTTTTCAGGTGTAATGTATGATTATCTTCGT 1994
Query 2169 TTGGAAGGTCCTTCCGGAGTTTGATAAACTAAATA 2203
||||||||||||||||| |||||||||||||||||
Sbjct 1995 TTGGAAGGTCCTTCCGGTGTTTGATAAACTAAATA 2029
Score = 313 bits (169), Expect = 5e-84
Identities = 266/310 (86%), Gaps = 18/310 (6%)
Strand=Plus/Plus
Query 145 TGGCCAAGGAGA-TGGAATACGGAGCTCCGGGAATGAAGGCTGGTCGCCGGGTTC-TAAC 202
||| |||||| | ||||| ||||| |||||||| |||||| ||| | |||| || | ||
Sbjct 22 TGGACAAGGA-ATTGGAAAACGGATCTCCGGGAGTGAAGG-TGG--GTCGGG-TCATGAC 76
Query 203 TCCA-CTTTTCGTTCTAG-TTTTCCTTCTTCAAGGTGTTCATTCTCA-AACATCACGAAA 259
| || |||||||||| | ||||||||||||||||||||| ||| || ||| |||| |||
Sbjct 77 T-CAGGTTTTCGTTCT-GATTTTCCTTCTTCAAGGTGTTCGTTC-CACAACGTCACTAAA 133
Query 260 CAAATTCAACATCGCAAAAGCGGGACATAAACTTGCATCTCCCCCGGTTACGCTTAAGAA 319
||| || ||| || ||||| ||||||| |||| |||||||||||||||||||| |||
Sbjct 134 CAATTTAAACGTCACAAAACCGGGACAAAAAC---AATCTCCCCCGGTTACGCTTAGGAA 190
Query 320 AGTTGGTGATAACCAAGTGGTCGTTGATAACGGTATCATCGATGTTACCTTCTCGAGTCC 379
||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||
Sbjct 191 AGTTGGTCATAACCAAGTGGTCGTTGATAACGGTATCATCCAAGTTAGCTTCTCGAGTCC 250
Query 380 A-CAAGGATTAATAACTAGAATCAAGTACAATGGCTTAAACAATGTGTTGAACGACCAAA 438
| || || ||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 251 AGCA-GGCTTAATAACTGGAATCAAGTACAATGGCTTTAACAATGTGTTGAACGACCAAA 309
Query 439 TTGAAAATCG 448
|||| |||||
Sbjct 310 TTGAGAATCG 319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86998119580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5