BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G37950.1 Length=2310 Score E Sequences producing significant alignments: (Bits) Value Ahg944044 jgi|Araly1|944044|scaffold_700273.1 2361 0.0 > Ahg944044 jgi|Araly1|944044|scaffold_700273.1 Length=2038 Score = 2361 bits (1278), Expect = 0.0 Identities = 1573/1715 (92%), Gaps = 22/1715 (1%) Strand=Plus/Plus Query 503 TTTAGTAGGA-ACAAAATTCGATATTGTAAATCAAACAAGTGAACAAATTGAAATTTCAT 561 |||||||||| | ||||||| |||||||||||||||||||||| || | |||||||| | Sbjct 323 TTTAGTAGGAGA-AAAATTCAATATTGTAAATCAAACAAGTGAGCATGTCGAAATTTCTT 381 Query 562 TTTCGAGAAC---G--T-TCTCTCAACGGGGCTCAGGAATCCCATTAAACGTAGACAAAC 615 |||||||||| | | ||||||||| ||| ||| ||||||||||||||||||| Sbjct 382 TTTCGAGAACATGGAATATCTCTCAACATACCTCGGGAGCCCCATTAAACGTAGACAAAA 441 Query 616 GATATATTATTCGAAGAGGTGTATCCGGAATATACATGTACGCTGTATTGGAGAGGTTAA 675 ||||||| |||||||| ||||| |||||| | |||||||||||||| || ||||| |||| Sbjct 442 GATATATCATTCGAAGTGGTGTGTCCGGAGTCTACATGTACGCTGTGTTAGAGAGATTAA 501 Query 676 TAGGTTGGCCTGACGTGGACATGGACCAAATCAGAATCGTCTTCAAGCTTAACACAACAA 735 ||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 502 AAGGTTGGCCCGACGTGAACATGGACCAAACCAGAATCGTCTTCAAGCTTAACACAACAA 561 Query 736 AATTCGATTTCATGGCTGTTTCCGATAATCGGCAAAAAATAATGCCTTTTG-ATACAGAT 794 ||||||||| ||||||| | || ||| |||||| ||||| ||||||| || | |||||| Sbjct 562 AATTCGATTACATGGCTATATCTGATGGTCGGCAGAAAATTATGCCTTCTGCA-ACAGAT 620 Query 795 CGAGACATTACCAAA--GGTCGTGCCAGTCCATTGGCTTACAAAGAAGCTGTTCATTTGA 852 ||||| | | | ||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 621 CGAGATA-T-CAAAACTGGTCGTGCTAGTCCATTGGCTTACAAAGAAGCTGTTCATTTGA 678 Query 853 TAAATCCACAAAATCATATGCTTAAAGGGCAGGTAGACGATAAGTACATGTACTCGGTGG 912 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 679 TAAATCCCCAAAATCATATACTTAAAGGGCAGGTAGACGATAAGTACATGTACTCGATGG 738 Query 913 AAAACAAAGACAACAAAGTACACGGTTGGATATCGTCGGACCAACGT-ATCGGTTTCTGG 971 ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| Sbjct 739 AAAACAAAGACAACAAAGTACACGGTTGGATATCGGCGGACCAACGTGTTGGGTTT-TGG 797 Query 972 ATGATCACGCCCAGCGACGAGTTCCATGCATGTGGGCCGATCAAACAAGATCTCACTTCT 1031 ||||| || |||||||| ||||| | | |||||||||| ||||||||||||||||||||| Sbjct 798 ATGATTACTCCCAGCGATGAGTTTCGTTCATGTGGGCCCATCAAACAAGATCTCACTTCT 857 Query 1032 CATGTGGGCCCCACCACTCTTTCGATGTTTACAAGTGTACATTACGCGGGAAAAGATATG 1091 |||||||| ||||||| |||||| ||||||||||||||||||||||||||| |||||| Sbjct 858 CATGTGGGACCCACCATTCTTTCAATGTTTACAAGTGTACATTACGCGGGAGTAGATATT 917 Query 1092 AACACAAATTATAAAAGCAAGGAACCGTGGAAGAAGGTGTTTGGTCCTGTCTTTGTTTAT 1151 ||||||| ||||||||||||||| || |||| |||| ||||||| ||||||||||||||| Sbjct 918 AACACAATTTATAAAAGCAAGGAGCCATGGAGGAAGATGTTTGGCCCTGTCTTTGTTTAT 977 Query 1152 CTCAATTCTGCTTCTTCTCGTAATCTTCTCTGGACCGATGCTAAACGACAGATGGTTTCC 1211 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 978 CTCAATTCTGCCTCTTCTCGTAATCTTCTCTGGACCGATGCTAAACGACAGATGGTTTCC 1037 Query 1212 GAGGTCCAAAGCTGGCCTTATGATTTCGTGAAATCTGTAGATTACCCTCTTCATCACCAA 1271 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1038 GAGGTCCAAAGTTGGCCTTATGATTTCGTGAAGTCAGTAGATTACCCTCTTCATCACCAA 1097 Query 1272 AGAGGAA-CAGTCAAGGGTC-AATTATTTGTCATAGACAGATACATCAAAAACGTGACGT 1329 ||||||| | |||||||||| || | |||||||| || ||||||| ||||| || ||| Sbjct 1098 AGAGGAATC-GTCAAGGGTCGAA-TCTTTGTCATGGAGAGATACAACAAAAGCGAAACGA 1155 Query 1330 ACTTATTCGGGCAATTTGCTTTTGTGGGATTAGCATTACCTGGTGAAGCTGGTTCTTGGC 1389 ||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1156 ACTTATTTGGGAAATTTGCTTTTGTGGGATTAGCCTTACCTGGTGAAGCTGGTTCATGGC 1215 Query 1390 AAACCGAAAACAAGGGATATCAATTTTGGACACGAGCAGACAAAAT-GGGAATGTTCACA 1448 |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| Sbjct 1216 AAACCGAAAACAAGGGATATCAATTTTGGACACGAGCAGACAAAGTAGGG-ATGTTCACA 1274 Query 1449 ATAGCGAATGTGAGACCAGGGACGTATAGTCTCTACGCATGGGTTTCTGGATTTATCGGT 1508 ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 1275 ATAGCGAATGTTAGACCAGGGAAGTATAGTCTCTACGCATGGGTTTCTGGGTTTATCGGT 1334 Query 1509 GACTATAAATATGTGCGTGACATTACCATCACACCAGGTAGGGAGATAGACGTTGGACAC 1568 ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| | Sbjct 1335 GACTACAAATATGAGCGTGACATTACCATCACACCAGGTAGGGTGATAGACGTAGGACGC 1394 Query 1569 ATAGTGTACGTGCCACCGAGAAACGGCCCAACACTGTGGGAGATCGGACAACCGGACCGA 1628 |||||||||| |||||||||||| || || || ||||||||||||||| |||| |||||| Sbjct 1395 ATAGTGTACGAGCCACCGAGAAATGGTCCGACTCTGTGGGAGATCGGAGAACCAGACCGA 1454 Query 1629 ACCGCGGCAGAATTCTATATCCCAGATCCGGACCCAACCCTTTTCACCAAACTTTATCTA 1688 ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 1455 ACCGCCGCAGAATTCTATATCCCAGATCCGGACCCAACCCTTTTGACCAAACTCTATCTA 1514 Query 1689 AATTACTCAAATCCTCAAGATAGATTTAGACAGTATGGTCTATGGGATCGTTACAGTGTT 1748 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 1515 AATTACTCAAATCCTCAAGACAGATTTAGACAATATGGTCTATGGGATCGTTACAGTGTT 1574 Query 1749 TTGTATCCTCGAAACGATCTTGTTTTTACTGCTGGAGTGAGTGACTATAAAAAAGACTGG 1808 |||||||||||||| |||||| |||||||| || |||| ||||||| ||||||||||||| Sbjct 1575 TTGTATCCTCGAAAAGATCTTATTTTTACTACTAGAGTAAGTGACTTTAAAAAAGACTGG 1634 Query 1809 TTCTATGCCCATGTCAACAGGAAAGCTGGAAATGGGACATATAAAGCAACGACATGGCAA 1868 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1635 TTCTATGCCCATGTCAACAGGAAAGCTGGAAATGGGACATATAAAGCAACAACATGGCAA 1694 Query 1869 ATTAAGTTTAATTTGAAAGCAGTGATTCAAACTAGAATATACACACTTCGAATAGCTTTG 1928 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1695 ATTAAGTTTAATTTAAAAGCAGTGATTCAAACTAGAATCTACACACTTCGAATAGCTTTG 1754 Query 1929 GCTGCAGCCTCAACAATTGATCTACTGGTTTGGGTCAACGAAGTTGATTCCAAACCTCTA 1988 ||||||||| |||| | ||||||| |||||||||||||| ||| | |||||||||| ||| Sbjct 1755 GCTGCAGCCACAACTACTGATCTAGTGGTTTGGGTCAACCAAGCTAATTCCAAACCCCTA 1814 Query 1989 TTCATAACTGGGCTAATCGGTCGGGATAACGCGATCGCGAGGCATGGGATTCATGGGTTG 2048 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1815 TTCATAACTGGGCTAATAGGTCGGGATAACGCGATCGCCAGGCATGGGATTCATGGGTTG 1874 Query 2049 TACAAATTGTACAATATCGATGTTCATGGAAAGTTACTTAGGGTTGGTAATAATACTATT 2108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1875 TACAAATTGTACAATATCGATGTTCATGGAAAGTTACTTAGGGTTGGTAATAATACTATT 1934 Query 2109 TTTCTTACTCATGGTCGGAACTCTGATTCTTTTTCAGGTGTAATGTATGATTATCTTCGT 2168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1935 TTTCTTACTCATGGTCGGAACTCTGATTCTTTTTCAGGTGTAATGTATGATTATCTTCGT 1994 Query 2169 TTGGAAGGTCCTTCCGGAGTTTGATAAACTAAATA 2203 ||||||||||||||||| ||||||||||||||||| Sbjct 1995 TTGGAAGGTCCTTCCGGTGTTTGATAAACTAAATA 2029 Score = 313 bits (169), Expect = 5e-84 Identities = 266/310 (86%), Gaps = 18/310 (6%) Strand=Plus/Plus Query 145 TGGCCAAGGAGA-TGGAATACGGAGCTCCGGGAATGAAGGCTGGTCGCCGGGTTC-TAAC 202 ||| |||||| | ||||| ||||| |||||||| |||||| ||| | |||| || | || Sbjct 22 TGGACAAGGA-ATTGGAAAACGGATCTCCGGGAGTGAAGG-TGG--GTCGGG-TCATGAC 76 Query 203 TCCA-CTTTTCGTTCTAG-TTTTCCTTCTTCAAGGTGTTCATTCTCA-AACATCACGAAA 259 | || |||||||||| | ||||||||||||||||||||| ||| || ||| |||| ||| Sbjct 77 T-CAGGTTTTCGTTCT-GATTTTCCTTCTTCAAGGTGTTCGTTC-CACAACGTCACTAAA 133 Query 260 CAAATTCAACATCGCAAAAGCGGGACATAAACTTGCATCTCCCCCGGTTACGCTTAAGAA 319 ||| || ||| || ||||| ||||||| |||| |||||||||||||||||||| ||| Sbjct 134 CAATTTAAACGTCACAAAACCGGGACAAAAAC---AATCTCCCCCGGTTACGCTTAGGAA 190 Query 320 AGTTGGTGATAACCAAGTGGTCGTTGATAACGGTATCATCGATGTTACCTTCTCGAGTCC 379 ||||||| |||||||||||||||||||||||||||||||| | |||| |||||||||||| Sbjct 191 AGTTGGTCATAACCAAGTGGTCGTTGATAACGGTATCATCCAAGTTAGCTTCTCGAGTCC 250 Query 380 A-CAAGGATTAATAACTAGAATCAAGTACAATGGCTTAAACAATGTGTTGAACGACCAAA 438 | || || ||||||||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct 251 AGCA-GGCTTAATAACTGGAATCAAGTACAATGGCTTTAACAATGTGTTGAACGACCAAA 309 Query 439 TTGAAAATCG 448 |||| ||||| Sbjct 310 TTGAGAATCG 319 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86998119580 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5