BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37970.1
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490819 jgi|Araly1|490819|fgenesh2_kg.7__252__AT4G37970.1 1814 0.0
> Ahg490819 jgi|Araly1|490819|fgenesh2_kg.7__252__AT4G37970.1
Length=1169
Score = 1814 bits (982), Expect = 0.0
Identities = 1108/1169 (95%), Gaps = 8/1169 (1%)
Strand=Plus/Plus
Query 16 GAGTGAGAGATGGAGAGATTATCAGGAGAGAAAGAGCAGAGCGTAGAGGCGTTTGGATGG 75
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1 GAGTGAGAGATGGAGAGATTGTCAGGAGAGAAAGAACAGAGCGTAGAGGCGTTTGGATGG 60
Query 76 GCCGCGAGAGACTCCTCAGGCCATCTCTCTCCCTTTGTCTTTTCTAGAAGGAAAACAGGA 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCCGCGAGAGACTCCTCAGGCCATCTCTCTCCCTTTGTCTTTTCTAGAAGGAAAACAGGA 120
Query 136 GAAGAGGAAGTGAGAGTGAAGGTGTTATATTGTGGAATATGTCATAGTGATCTCCATTGT 195
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGGAGGAAGTGAGAGTGAAGGTGTTATATTGTGGAATATGTCATAGTGATCTCCATTGT 180
Query 196 CTCAAGAACGAATGGCATTCCTCTATTTACCCTTTGGTTCCTGGTCACGAGATTATTGGA 255
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 181 CTCAAGAACGAATGGCATTCCTCTACTTACCCTTTGGTTCCTGGTCACGAGATTGTTGGA 240
Query 256 GAAGTGAGTGAAATAGGGAACAAAGTAAGTAAATTCAATCTTGGAGACAAAGTCGGTGTG 315
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGTGAGTGAGATAGGGAGCAAAGTAAGTAAATTCAATCTTGGAGACAAAGTCGGTGTG 300
Query 316 GGATGCATCGTAGATTCCTGCAGAACTTGCGAGAGTTGCCGAGAAGATCAAGAAAACTAC 375
|||||||| |||||||| ||| | |||||||| |||||||| ||||||||||| ||||||
Sbjct 301 GGATGCATAGTAGATTCATGCCGCACTTGCGAAAGTTGCCGTGAAGATCAAGAGAACTAC 360
Query 376 TGCACAAAAGCAATCGCAACCTATAACGGAGTTCACCACGATGGAACGATTAACTACGGT 435
||||| |||||| |||| |||||||||||||||||||| || ||||| ||||| ||||||
Sbjct 361 TGCACCAAAGCAGTCGCGACCTATAACGGAGTTCACCATGACGGAACAATTAATTACGGT 420
Query 436 GGATACTCCGACCATATCGTCGTCGATGAACGTTACGCTGTCAAAATTCCACACACATTG 495
|||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 421 GGATACTCCGACCACATCGTCGTTGATGAACGTTATGCCGTCAAAATTCCACACACATTG 480
Query 496 CCTCTAGTTTCGGCCGCACCTTTGCTTTGTGCAGGCATCTCGATGTACAGTCCTATGAAG 555
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTCTAGCTTCAGCCGCACCTTTGCTTTGTGCAGGCATCTCGATGTACAGTCCTATGAAG 540
Query 556 TACTTCGGATTGACCGGACCGGATAAACATGTCGGAATCGTGGGGCTAGGTGGTCTTGGA 615
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 TACTTCGGATTGGCCGGACCGGATAAACATATCGGAATCGTGGGGCTAGGTGGTCTTGGA 600
Query 616 CACATTGGTGTGAGATTTGCTAAAGCATTTGGGACAAAAGTCACGGTGGTTAGTTCGACC 675
|||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 601 CACATTGGGGTGAGATTTGCTAAAGCATTTGGGACTAAAGTCACGGTGATTAGTTCGACC 660
Query 676 ACTGGGAAATCTAAGGATGCTCTTGACACTCTTGGAGCTGATGGATTCTTGGTTAGTACT 735
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 ACTGGGAAATCTAAGGATGCTCTTGAAACTCTTGGAGCTGATGGATTCTTGGTTAGTACT 720
Query 736 GATGAAGACCAAATGAAGGCTGCAATGGGAACTATGGATGGCATAATTGATACAGTTTCT 795
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 721 GATGAAGACCAAATGAAGGCCGCAACGGGAACTATGGATGGCATAATTGATACAGTTTCT 780
Query 796 GCATCGCATTCGATTTCACCTTTGATTGGACTACTCAAATCCAACGGTAAACTTGTTCTA 855
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 ACATCGCATTCGATTTCACCTTTAATTGGACTACTCAAATCCAACGGTAAACTTGTTCTA 840
Query 856 CTCGGTGCAACGGAGAAGCCATTTGATATATCTGCATTTTCCTTAATATTGGGACGAAAA 915
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTCGGGGCAACGGAGAAGCCATTTGATATATCTGCATTTTCCTTAATATTGGGACGAAAA 900
Query 916 TCGATAGCGGGAAGTGGTATTGGAGGAATGCAAGAGACACAAGAGATGATTGACTTTGCG 975
|||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 901 TCGATAGCCGGAAGTGGTATTGGAGGAATGAAAGAGACACAAGAGATGATTGATTTTGCG 960
Query 976 GCAGAGCATGGCATAAAAGCAGAAATTGAGATCATATCCATGGATTATGTGAACACCGCC 1035
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GCTGAGCATGGCATAAAAGCAGAAATTGAGATCATATCCATGGATTATGTGAACACCGCC 1020
Query 1036 ATGGATAGACTTGCCAAAGGGGATGTTAGATATCGATTTGTCATTGACATTTCTAATACA 1095
|| |||||||| || ||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 1021 ATAGATAGACTGGCAAAAGGGGATGTTAGATATCGATTTGTCATCGACATTGCTAACACA 1080
Query 1096 TTGGCTGCTACTCGATCTTAATTAAAGTCGATGTTCTAT--AT----GTATTCAAAATAA 1149
|||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 1081 TTGGCTGCTACTCGATCTTAATTAAAGTCGATCTTCTATCTATATACGTATTCAAAATCG 1140
Query 1150 TCT--GGATTTCAATCCCACAAAACTTAA 1176
||| |||||||| |||||| ||||||||
Sbjct 1141 TCTCTGGATTTCAGTCCCACGAAACTTAA 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45442517064
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5