BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37980.1
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490817 jgi|Araly1|490817|fgenesh2_kg.7__250__AT4G37980.1 2246 0.0
Ahg944040 jgi|Araly1|944040|scaffold_700269.1 1105 0.0
> Ahg490817 jgi|Araly1|490817|fgenesh2_kg.7__250__AT4G37980.1
Length=1492
Score = 2246 bits (1216), Expect = 0.0
Identities = 1404/1495 (94%), Gaps = 12/1495 (1%)
Strand=Plus/Plus
Query 16 ATCACACTACTACCAGATCGAGTAACCATTAGGGACCATTAATTCACGTGGACGTAGTGA 75
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1 ATCACACTACTACCAGATCGAGTAACCATAAGGGACCATCAATTCACGTGGACGTAGTGA 60
Query 76 ATATGGTCCTTGTGAATTAATGAGTACGTAATTGTCCTCATTCATATATGGATCGGTTCC 135
||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 61 ATATGGTCCTTGTAAATTAATGAGTACGTAATTGTCCTCATTCACATATCGATCGGTTCC 120
Query 136 AC--A-A-ACATTTCCTGTATAAAATTCTACATCTTTCCTCTCATTATTATCTCTACACT 191
|| | | || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 ACAGACAGACCTTTCCTGTATAAAATTCGACATCTTTCCTCTCATTATTATCTCTACACT 180
Query 192 TCTCATCTCTCAATCCCATTCGCTTATTATTTATCCATATGGGAAAGGTTCTTGAGAAGG 251
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 TCTCATCTCTCAATCCCATTCGCTTATTGTTTATCCATATGGGAAAGGTTCTTGAGAAGG 240
Query 252 AGGCGTTTGGATTGGCTGCGAAAGACGAATCGGGAATTCTTTCGCCTTTCAGTTTCTCTA 311
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGGCGTTTGGATTAGCCGCGAAAGACGAATCGGGAATTCTTTCGCCTTTCAGTTTCTCTA 300
Query 312 GAAGGGCGACGGGTGAAAAGGATGTGAGGTTCAAAGTCTTGTTCTGTGGAATTTGCCACA 371
|||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGGGAGACAGGAGAAAAGGATGTGAGGTTCAAAGTCTTGTTCTGTGGAATTTGCCACA 360
Query 372 CTGATCTGAGTATGGCCAAAAACGAATGGGGGTTAACTACTTATCCTCTTGTCCCTGGGC 431
| |||||||||||||| |||||||||||||| || ||||||||||| |||||||||||||
Sbjct 361 CAGATCTGAGTATGGCTAAAAACGAATGGGGATTTACTACTTATCCCCTTGTCCCTGGGC 420
Query 432 ATGAGATTGTGGGCGTGGTGACTGAAGTTGGAGCCAAAGTGAAAAAATTCAACGCTGGAG 491
||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| |
Sbjct 421 ATGAGATTGTGGGGGTGGTGACTGAAGTTGGAGCCAAAGTGACCAAATTCAACGTTGGGG 480
Query 492 ACAAAGTCGGAGTTGGCTATATGGCCGGCTCGTGCAGGTCATGTGACAGCTGCAATGATG 551
||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||
Sbjct 481 ACAAAGTCGGAGTTGGCTATATGGCCGGCTCATGCCGGTCATGTGACAGCTGCAGCGATG 540
Query 552 GCGACGAGAACTACTGTCCAAAGATGATCTTAACGTCCGGAGCCAAAAACTT-TGACGAT 610
|||| ||||||||||||||||||||| || |||| |||||||||||| | || |||||||
Sbjct 541 GCGAAGAGAACTACTGTCCAAAGATGGTCCTAACATCCGGAGCCAAAGA-TTATGACGAT 599
Query 611 ACCATGACCCATGGTGGATACTCCGACCACATGGTGTGTGCTGAGGATTTCATCATCCGT 670
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCCATGACCCATGGTGGTTACTCCGACCACATGGTGTGTGCTGAGGATTTCATCATCCGT 659
Query 671 ATTCCTGACAATCTCCCATTAGACGGTGCCGCACCACTACTCTGCGCCGGGGTCACGGTC 730
|||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 ATTCCTAAAAATCTCCCATTAGACGGTGCCGCACCACTACTCTGTGCCGGGGTCACGGTC 719
Query 731 TACTCCCCCATGAAGTATCACGGGCTCGACAAGCCCGGTATGCACATCGGTGTGGTGGGA 790
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 720 TACTCCCCGATGAAGTATCACGGGCTCGACAAGCCCGGTATGCACATTGGTGTGGTGGGA 779
Query 791 CTAGGCGGTTTGGGCCATGTAGCAGTGAAATTTGCTAAGGCTATGGGTACTAAAGTTACG 850
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTAGGCGGTTTGGGTCATGTAGCAGTGAAATTTGCTAAGGCTATGGGTACTAAAGTTACG 839
Query 851 GTTATTAGTACTTCGGAGCGTAAGAGAGACGAGGCCGTTACTCGGCTTGGTGCGGATGCC 910
|||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 840 GTTATTAGTACTTCAGAGCGTAAGAGAGACGAGGCAGTTAATCGGCTTGGTGCGGATGCC 899
Query 911 TTCTTGGTGAGCCGTGACCCGAAACAAATGAAGGATGCAATGGGGACTATGGATGGTATC 970
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 TTCTTGGTGAGCCGTGACCCGAAACAAATGGAGGATGCAATGGGGACTATGGATGGTATA 959
Query 971 ATTGATACCGTATCTGCGACCCATCCACTTCTTCCGCTGCTTGGTTTGCTTAAAAATAAG 1030
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 960 ATTGATACCGTATCTGCAACCCATCCGCTTCTTCCGCTGCTTGGTTTGCTTAAAAATAAG 1019
Query 1031 GGAAAACTTGTTATGGTTGGTGCACCAGCAGAACCGCTCGAGCTTCCTGTTTTTCCTCTC 1090
||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||
Sbjct 1020 GGAAAACTTGTTATGGTTGGTGCACCAGCGGAACCGCTCGAGCTTCCTGTTATGCCTCTC 1079
Query 1091 ATCTTTGGGCGGAAGATGGTGGTGGGTAGTATGGTAGGAGGTATAAAGGAGACGCAAGAG 1150
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1080 ATCTTTGGGCGGAAGATGGTGGTGGGAAGTATGGTAGGAAGTATAAAGGAGACGCAAGAG 1139
Query 1151 ATGGTGGATTTGGCTGGAAAACACAACATCACGGCGGATATTGAGCTCATCTCTGCGGAT 1210
|||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1140 ATGGTGGACTTGGCCGGAAAACACAATGTCACTGCGGATATTGAGCTCATCTCTGCGGAT 1199
Query 1211 TATGTCAACACCGCCATGGAACGGCTTGCAAAGGCTGACGTTAAGTACCGATTTGTGATT 1270
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1200 TATGTCAACACCGCCATGGAACGGCTTGCAAAGGGTGACGTTAAGTACCGATTTGTGATT 1259
Query 1271 GATGTTGCCAACACGATGAAGCCAACTCCTTAACTAGAAAGCTTAAGAATTGAATATCCC 1330
|| ||||| ||||| |||||||||||| ||||| ||||||||| ||||||||||| ||||
Sbjct 1260 GACGTTGCGAACACAATGAAGCCAACTTCTTAATTAGAAAGCTAAAGAATTGAATTTCCC 1319
Query 1331 CAAAGCttttttcatgttttt-gcttgtttgtttgatgttgtttgctggcgactttgtgt 1389
||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||| ||
Sbjct 1320 CAAAGCTTTTTTCATGTTTTTTGCTTGTTTGGTTGATGTTGTTTGCTGACGACTTTTTGA 1379
Query 1390 gtAGTATTACCACACTGCATGTACTTTATCAGTTGAATAAACTTGAATATTGTATTTAAT 1449
|||||| ||||| | |||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1380 GTAGTACTACCA-A-TGCATGTACTTTATCAATTCAATAAACTTGAATATTGTATTTAAT 1437
Query 1450 AAGCTATCTACAT--T-AGATTTTGGGGAAGTTTGATTAAAATTTATTCCGATTG 1501
||||||| || || | |||||||||||||| || | ||||||||| || |||||
Sbjct 1438 AAGCTATATATATGATTAGATTTTGGGGAAGCTTAAGTAAAATTTACTCGGATTG 1492
> Ahg944040 jgi|Araly1|944040|scaffold_700269.1
Length=1122
Score = 1105 bits (598), Expect = 0.0
Identities = 958/1130 (85%), Gaps = 32/1130 (3%)
Strand=Plus/Plus
Query 217 ATTATTT-ATCCA-TATGGGAAAGGTTCTTGAGAAGGAGGCGTTTGGATTGGCTGCGAAA 274
||| ||| ||| | |||||||||||||||| |||| |||||||| || | || ||||||
Sbjct 7 ATTGTTTGATCGATTATGGGAAAGGTTCTTCAGAAAGAGGCGTTCGGGCTAGCCGCGAAA 66
Query 275 GACGAA-TCGGGAATTCTTTCGCC-TTTCAGTTTCTCTAGAAGGGCGACGGGTGAAAAGG 332
||| || || ||| |||| ||||| |||| ||||| ||||||||| || || |||||||
Sbjct 67 GAC-AATTCCGGAGTTCTCTCGCCTTTTC-GTTTCACTAGAAGGGAAACAGGAGAAAAGG 124
Query 333 ATGTGAGGTTCAAAGTCTTGTTCTGTGGAATTTGCCACACTGATCTG-AGTATGGCCAAA 391
|||||||||||||||| || |||||||||||||| ||| ||||| || | ||||| |||
Sbjct 125 ATGTGAGGTTCAAAGTGTTATTCTGTGGAATTTGTCACTCTGATTTGCA-TATGGTCAAG 183
Query 392 AACGAATGGGGGTTAACTACTTATCCTCTTGTCCCTGGGCATGAGATTGTGGGCGTGGTG 451
||||||||||| | ||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 184 AACGAATGGGGAATGTCTACTTATCCTCTTGTCCCAGGACATGAGATCGTGGGCGTGGTG 243
Query 452 ACTGAAGTTGGAGCCAAAGTGAAAAAATTCAACGCTGGAGACAAAGTCGGAGTTGGCT-A 510
|||||| | ||||||||||||| |||||||| | ||||| ||||| ||||| || |
Sbjct 244 ACTGAAATCGGAGCCAAAGTGACTAAATTCAAAACCGGAGAAAAAGTTGGAGTCGGGTGC 303
Query 511 TATGGCCGGCTCGTGCAGGTCATGTGACAGCTGCAATGATGGCGA-CGAGAACTACTGTC 569
| ||| | |||| ||| |||||||||||||||||| || || | || ||||||||||
Sbjct 304 T-TGGTCAGCTCATGCGGGTCATGTGACAGCTGCACCGAAGG-TATGGAAAACTACTGTC 361
Query 570 CAAAGAT-GATCTTAACGTCCGGAGCCAAAAACTTTGACGATACCATGACCCATGGTGGA 628
| || || |||| ||||| |||| ||| ||| ||||| ||||| || | |||||
Sbjct 362 CGAA-ATCGATCCAAACGTACGGATTCAAGTACTACGACGACACCATAACATACGGTGGT 420
Query 629 TACTCCGACCACATGGTGTGTG-CTG-AGGATTTCATCATCCGTATTCCTGACAATCTCC 686
||||||||||||||||| || | | | ||| |||||||||||||||||| ||||||||||
Sbjct 421 TACTCCGACCACATGGTTTGCGAC-GAAGG-TTTCATCATCCGTATTCCCGACAATCTCC 478
Query 687 CATTAGACGGTGCCGCACCACTACTCTGCGCCGGGGTCACGGTCTACTCCCCCATGAAGT 746
| || |||| |||||| || || ||||| |||||| |||||||||| ||||| |||||||
Sbjct 479 CCTTGGACGCTGCCGCGCCGCTCCTCTGTGCCGGGATCACGGTCTATTCCCCTATGAAGT 538
Query 747 ATCACGGGCTCGACAAGCCCGGTATGCACATCGGTGTGGTGGGACTAGGCGGTTTGGGCC 806
|||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| || |
Sbjct 539 ATCACGGGCTCGACAAACCCGGTATGCACATCGGTGTGGTAGGATTAGGCGGTTTAGGTC 598
Query 807 ATGTAGCAGTGAAATTTGCTAAGGCTATGGGTACTAAAGTTACGGTTATTAGTACTTCGG 866
|||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 ATGTAGGAGTGAAATTTGCCAAGGCTATGGGTACTAAGGTTACGGTTATTAGTACTTCGG 658
Query 867 AGCGTAAGAGAGACGAGGCCG-TTACTCGGCTTGGTGCGGATGCCTTCTTGGTGAGCCGT 925
|| | ||||||||||||| || ||| |||||||||||||||||| |||||||||||||||
Sbjct 659 AGAGAAAGAGAGACGAGG-CGATTAATCGGCTTGGTGCGGATGCTTTCTTGGTGAGCCGT 717
Query 926 GACCCGAAACAAATGAAGGATGCAATGGGGACTATGGATGGTATCATTGATACCGTATCT 985
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 718 GACCCGAAACAAATTAAGGATGCAATGGGGACTATGGATGGTATTATTGATACCGTATCT 777
Query 986 GCGACCCATCCACTTCTTCCGCTGCTTGGTTTGCTTAAAAATAAGGGAAAACTTGTTATG 1045
||||| ||| | ||||||||| |||| |||||||| || ||||||||||||||||||||
Sbjct 778 GCGACTCATTCGCTTCTTCCGTTGCTCGGTTTGCTGAAGCATAAGGGAAAACTTGTTATG 837
Query 1046 GTTGGTGCACCAGCAGAA-CCGCTCGAGCTTCCTGTTTTTCCTCTCATCTTTGGGCGGAA 1104
|||||||| || | |||| || |||||||| || || | |||||||| |||| | ||||
Sbjct 838 GTTGGTGCGCC-GGAGAAGCCACTCGAGCTACCGGTCATGCCTCTCATATTTGAGAGGAA 896
Query 1105 GATGGTGGTGGGTAGTATGGTAGGAGGTATAAAGGAGACGCAAGAGATGGTGGATTTGGC 1164
|||||| |||| |||||| ||||||| ||||| ||||| || || ||| | ||| ||||
Sbjct 897 GATGGTAATGGGAAGTATGATAGGAGGGATAAAAGAGACTCAGGAAATGATAGATATGGC 956
Query 1165 TGGAAAACACAACATCACGGCGGATATTGAGCTCATCTCTGCGGATTATGTCAACACCGC 1224
|| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 957 CGGGAAACACAACATCACCGCGGATATTGAGCTTATCTCTGCGGATTATGTCAACACCGC 1016
Query 1225 CATGGAACGGCTTGCA-AAGGCTGACGTTAAGTACCGATTTGTGATTGATGTTGCCAACA 1283
|||||||||||| | | ||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 1017 CATGGAACGGCTCG-AGAAGGCCGACGTTAGGTACCGCTTTGTGATTGATGTTGCCAACA 1075
Query 1284 CGAT-GAAGCC-AACTCCTTAACT-AGAAAG-CTTAAGAATTGAATATCC 1329
| || |||||| ||| ||| || | | || | |||||| ||| ||| |||
Sbjct 1076 C-ATTGAAGCCTAAC-CCT-AATTTATAA-GTCTTAAGCATTAAATTTCC 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56183111375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5