BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G37990.1
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944040 jgi|Araly1|944040|scaffold_700269.1 1821 0.0
Ahg490817 jgi|Araly1|490817|fgenesh2_kg.7__250__AT4G37980.1 1070 0.0
> Ahg944040 jgi|Araly1|944040|scaffold_700269.1
Length=1122
Score = 1821 bits (986), Expect = 0.0
Identities = 1075/1119 (96%), Gaps = 2/1119 (0%)
Strand=Plus/Plus
Query 72 TCATTGTTTGATCGATTATGGGAAAGGTTCTTCAGAAAGAGGCGTTCGGATTAGCCGCGA 131
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 5 TCATTGTTTGATCGATTATGGGAAAGGTTCTTCAGAAAGAGGCGTTCGGGCTAGCCGCGA 64
Query 132 AAGACAATTCCGGAGTTCTCTCGCC-TTTCAGTTTCACTAGAAGGGAAACAGGAGAAAAG 190
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 65 AAGACAATTCCGGAGTTCTCTCGCCTTTTC-GTTTCACTAGAAGGGAAACAGGAGAAAAG 123
Query 191 GATGTGAGGTTCAAAGTGTTATTTTGTGGAATTTGTCACTCTGATTTGCATATGGTCAAG 250
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 124 GATGTGAGGTTCAAAGTGTTATTCTGTGGAATTTGTCACTCTGATTTGCATATGGTCAAG 183
Query 251 AACGAGTGGGGAATGTCTACTTATCCTCTTGTCCCAGGGCATGAGATCGTGGGCGTGGTG 310
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 184 AACGAATGGGGAATGTCTACTTATCCTCTTGTCCCAGGACATGAGATCGTGGGCGTGGTG 243
Query 311 ACTGAAGTCGGAGCCAAAGTGACTAAATTCAAAACCGGAGAAAAAGTCGGAGTTGGGTGT 370
|||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 244 ACTGAAATCGGAGCCAAAGTGACTAAATTCAAAACCGGAGAAAAAGTTGGAGTCGGGTGC 303
Query 371 TTGGTCAGCTCGTGCGGGTCATGTGACAGCTGCACCGAAGGTATGGAAAACTATTGTCCA 430
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 304 TTGGTCAGCTCATGCGGGTCATGTGACAGCTGCACCGAAGGTATGGAAAACTACTGTCCG 363
Query 431 AAATCAATCCAAACGTACGGATTCCCGTACTACGACAACACCATAACATACGGTGGTTAC 490
||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 364 AAATCGATCCAAACGTACGGATTCAAGTACTACGACGACACCATAACATACGGTGGTTAC 423
Query 491 TCCGACCACATGGTTTGCGAGGAAGGTTTCGTCATCCGTATTCCAGACAATCTCCCCTTG 550
|||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||
Sbjct 424 TCCGACCACATGGTTTGCGACGAAGGTTTCATCATCCGTATTCCCGACAATCTCCCCTTG 483
Query 551 GACGCCGCCGCACCGCTCCTCTGTGCCGGTATCACGGTCTATTCCCCTATGAAGTATCAC 610
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 484 GACGCTGCCGCGCCGCTCCTCTGTGCCGGGATCACGGTCTATTCCCCTATGAAGTATCAC 543
Query 611 GGGCTCGACAAACCCGGTATGCACATCGGTGTGGTAGGATTAGGCGGTTTAGGTCATGTA 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GGGCTCGACAAACCCGGTATGCACATCGGTGTGGTAGGATTAGGCGGTTTAGGTCATGTA 603
Query 671 GGAGTGAAATTTGCCAAGGCTATGGGTACTAAGGTTACGGTTATTAGTACTTCGGAGAAA 730
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 604 GGAGTGAAATTTGCCAAGGCTATGGGTACTAAGGTTACGGTTATTAGTACTTCGGAGAGA 663
Query 731 AAGAGAGATGAGGCGATTAATCGGCTTGGTGCGGATGCTTTCTTGGTGAGCCGTGACCCA 790
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 AAGAGAGACGAGGCGATTAATCGGCTTGGTGCGGATGCTTTCTTGGTGAGCCGTGACCCG 723
Query 791 AAACAGATTAAGGATGCAATGGGTACTATGGATGGTATAATTGATACCGTCTCTGCGACT 850
||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 724 AAACAAATTAAGGATGCAATGGGGACTATGGATGGTATTATTGATACCGTATCTGCGACT 783
Query 851 CATTCACTTCTTCCGTTGCTCGGTTTGCTGAAGCATAAGGGAAAACTTGTTATGGTTGGT 910
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 CATTCGCTTCTTCCGTTGCTCGGTTTGCTGAAGCATAAGGGAAAACTTGTTATGGTTGGT 843
Query 911 GCACCCGAGAAGCCACTCGAGCTACCTGTCATGCCTCTCATCTTTGAGAGGAAGATGGTA 970
|| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 844 GCGCCGGAGAAGCCACTCGAGCTACCGGTCATGCCTCTCATATTTGAGAGGAAGATGGTA 903
Query 971 ATGGGAAGTATGATAGGAGGGATAAAAGAGACCCAGGAAATGATAGATATGGCCGGGAAA 1030
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 904 ATGGGAAGTATGATAGGAGGGATAAAAGAGACTCAGGAAATGATAGATATGGCCGGGAAA 963
Query 1031 CACAACATCACTGCGGATATTGAGCTTATCTCTGCCGATTATGTCAACACCGCCATGGAA 1090
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 964 CACAACATCACCGCGGATATTGAGCTTATCTCTGCGGATTATGTCAACACCGCCATGGAA 1023
Query 1091 CGGCTAGAGAAAGCCGACGTTAGGTACCGCTTTGTGATTGATGTTGCCAACACATTGAAG 1150
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CGGCTCGAGAAGGCCGACGTTAGGTACCGCTTTGTGATTGATGTTGCCAACACATTGAAG 1083
Query 1151 CCTAATCCTAATTTATAAGTTTTAAGCATTAAACTTCCT 1189
||||| |||||||||||||| |||||||||||| |||||
Sbjct 1084 CCTAACCCTAATTTATAAGTCTTAAGCATTAAATTTCCT 1122
> Ahg490817 jgi|Araly1|490817|fgenesh2_kg.7__250__AT4G37980.1
Length=1492
Score = 1070 bits (579), Expect = 0.0
Identities = 971/1156 (84%), Gaps = 43/1156 (4%)
Strand=Plus/Plus
Query 74 ATTGTTTGATCGATTATGGGAAAGGTTCTTCAGAAAGAGGCGTTCGGATTAGCCGCGAAA 133
||||||| ||| | |||||||||||||||| |||| |||||||| |||||||||||||||
Sbjct 206 ATTGTTT-ATCCA-TATGGGAAAGGTTCTTGAGAAGGAGGCGTTTGGATTAGCCGCGAAA 263
Query 134 GAC-AATTCCGGAGTTCTCTCGCCTTTCAGTTTCACTAGAAGGGAAACAGGAGAAAAGGA 192
||| || || ||| |||| ||||||||||||||| |||||||||| ||||||||||||||
Sbjct 264 GACGAA-TCGGGAATTCTTTCGCCTTTCAGTTTCTCTAGAAGGGAGACAGGAGAAAAGGA 322
Query 193 TGTGAGGTTCAAAGTGTTATTTTGTGGAATTTGTCACTCTGATTTGCA-TATGGTC-AAG 250
||||||||||||||| || || ||||||||||| ||| | ||| || | ||||| | ||
Sbjct 323 TGTGAGGTTCAAAGTCTTGTTCTGTGGAATTTGCCACACAGATCTG-AGTATGG-CTAAA 380
Query 251 AACGAGTGGGGAATGT-CTACTTATCCTCTTGTCCCAGGGCATGAGATCGTGGGCGTGGT 309
||||| ||||| || | |||||||||| |||||||| ||||||||||| ||||| |||||
Sbjct 381 AACGAATGGGG-ATTTACTACTTATCCCCTTGTCCCTGGGCATGAGATTGTGGGGGTGGT 439
Query 310 GACTGAAGTCGGAGCCAAAGTGACTAAATTCAAAACCGGAGAAAAAGTCGGAGTTGGGTG 369
||||||||| |||||||||||||| |||||||| || || |||||||||||||| |
Sbjct 440 GACTGAAGTTGGAGCCAAAGTGACCAAATTCAACGTTGGGGACAAAGTCGGAGTTGGCTA 499
Query 370 TTTGGTCAGCTCGTGCGGGTCATGTGACAGCTGCACCGAAGG-TATGGAAAACTATTGTC 428
| ||| | |||| ||| |||||||||||||||||| ||| || | || ||||| ||||
Sbjct 500 TATGGCCGGCTCATGCCGGTCATGTGACAGCTGCAGCGATGGCGA-AGAGAACTACTGTC 558
Query 429 CAAA-ATCAATCCAAACGTACGGATTCC--CGTACTACGACAACACCATAACATACGGTG 485
|||| || ||| ||| | |||| || | | || ||| | |||| || | ||||
Sbjct 559 CAAAGAT-GGTCCTAACATCCGGA-GCCAAAG-ATTATGACGATTCCATGACCCATGGTG 615
Query 486 GTTACTCCGACCACATGGT-T-TGC-GAGGAAGGTTTCGTCATCCGTATTCC-AGACAAT 541
||||||||||||||||||| | ||| |||| | |||| ||||||||||||| | | |||
Sbjct 616 GTTACTCCGACCACATGGTGTGTGCTGAGG-A--TTTCATCATCCGTATTCCTA-AAAAT 671
Query 542 CTCCCCTTGGACGCCGCCGCACCGCTCCTCTGTGCCGGTATCACGGTCTATTCCCCTATG 601
||||| || |||| |||||||| || ||||||||||| |||||||||| ||||| |||
Sbjct 672 CTCCCATTAGACGGTGCCGCACCACTACTCTGTGCCGGGGTCACGGTCTACTCCCCGATG 731
Query 602 AAGTATCACGGGCTCGACAAACCCGGTATGCACATCGGTGTGGTAGGATTAGGCGGTTTA 661
|||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||
Sbjct 732 AAGTATCACGGGCTCGACAAGCCCGGTATGCACATTGGTGTGGTGGGACTAGGCGGTTTG 791
Query 662 GGTCATGTAGGAGTGAAATTTGCCAAGGCTATGGGTACTAAGGTTACGGTTATTAGTACT 721
|||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 792 GGTCATGTAGCAGTGAAATTTGCTAAGGCTATGGGTACTAAAGTTACGGTTATTAGTACT 851
Query 722 TCGGAGAAAAAGAGAGATGAGGCGA-TTAATCGGCTTGGTGCGGATGCTTTCTTGGTGAG 780
|| ||| |||||||| ||||| | |||||||||||||||||||||| |||||||||||
Sbjct 852 TCAGAGCGTAAGAGAGACGAGGC-AGTTAATCGGCTTGGTGCGGATGCCTTCTTGGTGAG 910
Query 781 CCGTGACCCAAAACAGATTAAGGATGCAATGGGTACTATGGATGGTATAATTGATACCGT 840
||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||||||
Sbjct 911 CCGTGACCCGAAACAAATGGAGGATGCAATGGGGACTATGGATGGTATAATTGATACCGT 970
Query 841 CTCTGCGACTCATTCACTTCTTCCGTTGCTCGGTTTGCTGAAGCATAAGGGAAAACTTGT 900
||||| || ||| | ||||||||| |||| |||||||| || ||||||||||||||||
Sbjct 971 ATCTGCAACCCATCCGCTTCTTCCGCTGCTTGGTTTGCTTAAAAATAAGGGAAAACTTGT 1030
Query 901 TATGGTTGGTGCACCCGAG-AAGCCACTCGAGCTACCTGTCATGCCTCTCATCTTTGAGA 959
||||||||||||||| | | || || |||||||| ||||| |||||||||||||||| |
Sbjct 1031 TATGGTTGGTGCACCAGCGGAA-CCGCTCGAGCTTCCTGTTATGCCTCTCATCTTTGGGC 1089
Query 960 GGAAGATGGTAATGGGAAGTATGATAGGAGGGATAAAAGAGACCCAGGAAATGATAGA-T 1018
|||||||||| ||||||||||| ||||| | ||||| ||||| || || ||| | || |
Sbjct 1090 GGAAGATGGTGGTGGGAAGTATGGTAGGAAGTATAAAGGAGACGCAAGAGATGGTGGACT 1149
Query 1019 ATGGCCGGGAAACACAACATCACTGCGGATATTGAGCTTATCTCTGCCGATTATGTCAAC 1078
||||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1150 -TGGCCGGAAAACACAATGTCACTGCGGATATTGAGCTCATCTCTGCGGATTATGTCAAC 1208
Query 1079 ACCGCCATGGAACGGCTAGAGAAAGCC-GACGTTAGGTACCGCTTTGTGATTGATGTTGC 1137
||||||||||||||||| | |||| ||||||| |||||| ||||||||||| |||||
Sbjct 1209 ACCGCCATGGAACGGCTTGC-AAAGGGTGACGTTAAGTACCGATTTGTGATTGACGTTGC 1267
Query 1138 CAACACATTGAAGCCTAA-TCCT-AATTTATAA-GTTTTAAGCATTAAACTTCCTCAAAT 1194
|||||| ||||||| || | || |||| | || | | ||| ||| || |||| ||||
Sbjct 1268 GAACACAATGAAGCC-AACTTCTTAATT-AGAAAGCTA-AAGAATTGAATTTCCCCAAA- 1323
Query 1195 G-TTATTTTCTTGTTT 1209
| || ||||| |||||
Sbjct 1324 GCTT-TTTTCATGTTT 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5