BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38000.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490815 jgi|Araly1|490815|fgenesh2_kg.7__248__AT4G38000.1 1273 0.0
> Ahg490815 jgi|Araly1|490815|fgenesh2_kg.7__248__AT4G38000.1
Length=899
Score = 1273 bits (689), Expect = 0.0
Identities = 842/913 (92%), Gaps = 21/913 (2%)
Strand=Plus/Plus
Query 61 aaaaaataaaaaGAGTTTATAACTCATGATGACGTCATCCCATCAGAGCAACACCACCGG 120
||| || |||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 4 AAACAA-AAAAAGGGTATATAATTCATGATGACGTCATCCCATCAGAGCAACACCACCGG 62
Query 121 CTTTAAACCGCGGCGGATCAAGACGACGGCGAAGCCACCACGTCAGATCAATAACAAAGA 180
||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 63 CTTTAAACCACGGAGGATCAAGACGACGGCGAAGCCACCACGTCAGATCAACAACAAAGA 122
Query 181 ACCATCTCCGGCGACGCAGCCGGTGCTCAAGTGTCCGAGATGTGATTCAGTCAACACCAA 240
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 123 ACCATCTCCGGCGACGCAGCCGGTACTCAAGTGTCCGAGATGTGATTCAGTGAACACCAA 182
Query 241 ATTCTGCTACTACAACAACTACAGCTTGTCTCAGCCACGTCACTACTGCAAGAACTGTCG 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 ATTCTGTTACTACAACAACTACAGCTTGTCTCAGCCACGTCACTACTGCAAGAACTGTCG 242
Query 301 TCGTTACTGGACACGTGGCGGCGCCCTCCGTAACGTTCCCATCGGTGGCTCCACTCGAAA 360
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 243 CCGGTACTGGACACGTGGCGGCGCCCTCCGTAACGTCCCCATCGGTGGCTCCACTCGAAA 302
Query 361 CAAGAACAAGCCTTGCAGCCTCCAAGTCATCTCTTCTCCTCCTTTGTTCTCGAACGGGAC 420
||||||||||||||| |||||||| |||||||||||||||| |||||||||||||| |||
Sbjct 303 CAAGAACAAGCCTTGTAGCCTCCACGTCATCTCTTCTCCTCATTTGTTCTCGAACGTGAC 362
Query 421 GTCATCGGCGTCTCGTGAGCTTGTAAGAAACCATCCATCGACGGCAATGATGATGATGAG 480
||||||| |||||| || ||||||||||||||||| |||||||| |||||||||| |||
Sbjct 363 GTCATCGTCGTCTCACGAACTTGTAAGAAACCATCCTTCGACGGCGATGATGATGAGGAG 422
Query 481 TTCTGGTGGATTCTCCGGCTATATGTTTCCGTTGGATCCTAACTT-CAACCTTGCCTCGT 539
||| ||||||||||||||||| |||||||||||||||||||| || |||||||| || |
Sbjct 423 TTCAGGTGGATTCTCCGGCTACATGTTTCCGTTGGATCCTAA-TTATAACCTTGCATCTT 481
Query 540 CTTCTATCGAGTCTTTGAGTTCTTTTAACCAAGATTTGCACCAGAAGCTTCAGCAACAAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CTTCTATCGAGTCTTTGAGTTCTTTTAACCAAGATTTGCACCAGAAGCTTCAGCAACAAA 541
Query 600 GACTCGTCACTTCCATGTTTCTCCAAGATTCTCTTCCGGTTAACGAGAAAACGGTTATGT 659
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 542 GACTCGTCACTTCCATGTTTCTCCAAGATTCTCTTCCGGTTAACCAGAAACCGGATATGT 601
Query 660 TTCAGAACGTAGAGTTGATTCCTCCTTCGACGGTGACGACGGATTGGGTTTTCGATAGGT 719
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 602 TTCAGAACGTAGAGTTGATTCCTCCTTCGACGGCGACGACGGATTGGGTTTTCGATAGAT 661
Query 720 TCGCCACTGGAGGAGGTGCAACAAGTGGCAATCATGAAGATAATGATGATGGGGAGGGTA 779
|||||| |||||||| ||||||||||||||||||||||||||| |||||| |||||||
Sbjct 662 CCGCCACAGGAGGAGGAACAACAAGTGGCAATCATGAAGATAATGGTGATGGTGAGGGTA 721
Query 780 ATTTGGGAAATTGGTTCCATAATGCTAATAATAATGCTCTGCTCTAATTATCAATTATCA 839
||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||||
Sbjct 722 ATTTGGGAAATTGGTACCATAATGTTAATAATAATGCTCTGCTCTAATTACCA-TTATCA 780
Query 840 TTTACTCTCTATTTCTCTAAATATTGTAGCTAGCATGCAGAAGCTATGGCTGATAAAACT 899
|||||| | | ||||||||||||||||||| |||||| ||||| ||||||
Sbjct 781 TTTACT----A-------A--TATTGTAGCTAGCATGCAGCAGCTATAGCTGAAAAAACT 827
Query 900 AGTAATAATTTCCCCTTT---GTAATTTTTAGCATAATAAATTTGCTTAATTTCCAAGAG 956
||||||||||| |||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 828 AGTAATAATTTTCCCTTTCTTGTAATTTTTAGCATAATAAATA-GTTTAATTTCCAAGAG 886
Query 957 AAAAAATTAACTT 969
||||||| |||||
Sbjct 887 AAAAAATGAACTT 899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5