BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38020.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944037 jgi|Araly1|944037|scaffold_700266.1 1596 0.0
> Ahg944037 jgi|Araly1|944037|scaffold_700266.1
Length=1108
Score = 1596 bits (864), Expect = 0.0
Identities = 1033/1114 (93%), Gaps = 14/1114 (1%)
Strand=Plus/Plus
Query 26 GGATTAGTTGCAGAAGTGCAATGCATTGCGGATGTG-TATTCGCTTCACAAACTGTGTCA 84
|||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||
Sbjct 1 GGATTAGTTGCAGAAGTGCAATGCATTGCGGATGTGCT-TTCGCTTCACAATCTGTGTCA 59
Query 85 TCACTTCTCCCATTTGAAATTAAAACCTATGCGTCAAAGCTTCGAGCTTCGTCAGCCCAA 144
||| ||||||||||||||| ||| ||| || |||||||||||| |||| ||||| |||
Sbjct 60 CCACGTCTCCCATTTGAAATCAAAGCCTCTGTTTCAAAGCTTCGATCTTCATCAGCTCAA 119
Query 145 TTACCGAGAACCCAGATTCAGATAAACCCTT-CAGATGATCT-CTCTATCTACGGTTCAG 202
||||||||||||||||||||||||| ||||| || ||||| | || | || || ||||||
Sbjct 120 TTACCGAGAACCCAGATTCAGATAACCCCTTCCA-ATGATATCCT-TGTCAACAGTTCAG 177
Query 203 ATAAATCTCCGGCGAATAGAGTTTCGTTGCCGTCTCATGTAAATTCTATCACCAGTACTA 262
||||||||||| ||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 178 ATAAATCTCCGTCGACTAGAGTTTCGTTGCCGTCTCATGTAAATTCCATCACCAGCACTT 237
Query 263 CAAACCCTTTTGTCAAACACTGCTTGAAGCTCCGCCAAAGTTCCTCGTATCGCCACGCTC 322
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 238 CAAACCCTTTTGTCAAACACTGCTTGAAGCTCCGCCAAAGCTCTTCTTATCGCCACGCTC 297
Query 323 ATGGCTCTGTTCTTGTCGTCGGAACTATCCCCATCAGGGAAGTATGTATGTTTCAAACGA 382
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||
Sbjct 298 ATGGCTCTGTTCTTGTCGTCGGAGCTATCCCAATCAGGGAAGTATGTATGTTTCAAATGA 357
Query 383 ATAAGCAAGGAATGACCACTGAAATTGAGTGCCTACTTCTTCATGAGGAAGCTAAGATTC 442
||||||||||||| || | |||||||||||| ||||||||||||||||||||| ||||||
Sbjct 358 ATAAGCAAGGAATCACAAGTGAAATTGAGTGTCTACTTCTTCATGAGGAAGCTCAGATTC 417
Query 443 CACAAGGATTAGAGAGTCTAAGTATCCGAATTGTTAGAGTAAGTTCTTTAGTGATGAAGA 502
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 418 CACAAGGATTAGAGAGTCTAAGTATCCGAATTGTTCGAGTAAGTTCTTTAGTGATGAAGA 477
Query 503 AACTCTCTGGAGTGCAATCTACTGAATCTGTTGAAGCCATTGCCTTGATGAGAATCCCTA 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AACTCTCTGGAGTGCAATCTACTGAATCTGTTGAAGCCATTGCCTTGATGAGAATCCCTA 537
Query 563 GCAGCTTTACTGATCTTAAAGATGATAAAGACATCATAACAGACTGCAACAAATGGTTCC 622
||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 538 GCAGCTTTATTGATCTTAAAGATGATAAAGATATCATAACAGATTGCAATAAATGGTTCC 597
Query 623 CTTCT---GCTCACAGAGTTCTTGTTCTGGACAGCATACAGGATCCAGGGAACCTTGGCA 679
||||| |||||| ||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 598 CTTCTTCTGCTCACCGAGTTCTTGTTCTCGATAGCATACAGGATCCGGGGAACCTTGGCA 657
Query 680 CATTAGTCAGATCAGCTATGGCTTTTAATTGGGATGGTGCATTTCTACTTCCGGGTTGTT 739
||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 658 CATTAATCAGATCGGCTATGGCTTTTAATTGGGATGGTGCATTTCTGCTTCCCGGTTGTT 717
Query 740 GCGATCCGTACAACGACAAAGCTCTTCGAGCAAGCCGAGGTGCTTCGTTTCAGCTACCTA 799
| ||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 718 GTGATCCGTTCAACAACAAAGCTCTTCGAGCATGCCGAGGTGCTTCGTTTCAGCTACCTA 777
Query 800 TAGTTTCCGGGAATTGGAACCATCTTAAG-CTTCTAGAAAATGAGTTCCAGATGAAGCTA 858
|||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||||
Sbjct 778 TAGTTTCCGGCAATTGGAACCATCTTAAGGCT-CTAGAACATGAGTTCCAGATGAAGCTA 836
Query 859 TTAGCTGGTCATCCAGCAACGACTACTCAGAAACTGAAACCTGTCTCCAAACTTTCGGTA 918
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 837 TTAGCTGGTCATCCAGCAACGACTACTCAGAAACCGAAACCTGTCTCCAAACTTTCCTTA 896
Query 919 GAGTTTGCTCAATCTTTAGCAGAGAAGCCTTTATGCTTGATTTTAGGTAGTGAAGGGAAT 978
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 897 GAGTTTGCTCAATCTGTAGCAGAGAAGCCTTTATGCTTGATTTTAGGTAGCGAAGGGAAC 956
Query 979 GGTTTGTCTGAGCAGGCACGGAAAGTATGCGTGCTAGTGAGCATTCCCATGGCAGGTGAC 1038
||||||||||||||| ||| ||||||||||| ||| ||||||||||||||||||||||||
Sbjct 957 GGTTTGTCTGAGCAGTCACAGAAAGTATGCGAGCTTGTGAGCATTCCCATGGCAGGTGAC 1016
Query 1039 TTTGAATCTCTTAACGTCTCTGTTGCTGGTGGTATTTTCTTGTACATGCTTCAAAATCTT 1098
||||||||||| |||||||||||||||||||| |||||||||| |||||||||| ||||
Sbjct 1017 TTTGAATCTCTGAACGTCTCTGTTGCTGGTGGCATTTTCTTGTTCATGCTTCAA--TCTT 1074
Query 1099 GTTTAGGTTGT-AAAACCAAAATATAAACTTGAA 1131
||| |||| | ||||||||||||||||||||||
Sbjct 1075 GTTCCGGTTCTTAAAACCAAAATATAAACTTGAA 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5