BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38030.1
Length=2137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353036 jgi|Araly1|353036|fgenesh1_pg.C_scaffold_7000209 3249 0.0
Ahg315485 jgi|Araly1|315485|fgenesh1_pm.C_scaffold_2000518 1327 0.0
> Ahg353036 jgi|Araly1|353036|fgenesh1_pg.C_scaffold_7000209
Length=2001
Score = 3249 bits (1759), Expect = 0.0
Identities = 1927/2008 (96%), Gaps = 11/2008 (1%)
Strand=Plus/Plus
Query 1 ATGGTATCGCAGAAGAAGATCGCTTCGTTATTTATTTGTTTCCTTCTGTTGCTTCTTCTT 60
||||| | |||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGTTTTGCAGAAGAAGATAGCTTCGTTAATTATTTGTTTCCTTCTGTTGCTTCTTCTT 60
Query 61 CCACTCTCCTTTTCCAAGCCGACAAGGAACTTAGATGGAATAAGTGCAAGAGCTCCAACA 120
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CCACTCTCCTTTTCTAAGCCGACAAGAAACTTAGATGGAATAAGTGCAAGAGCTCCAACA 120
Query 121 GTGCAGCAGATAAGAAGCAGACATCATGGGACTAGAGAGGTGATAGTGGACAATGGGATA 180
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGCAGCAGATAAGAAACAGACATCATGGGACTAGAGAGGTGATAGTGGACAATGGGATT 180
Query 181 ATCAGAGTCAGTTTCTCGAATCCTCAAGGACTTATAACTGGGATCAAATACAAAGGAATT 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 ATCAGAGTCAGTTTCTCGAATCCTCAAGGACTTGTAACTGGGATCAAATACAAAGGAATT 240
Query 241 GATAATGTTCTTCATCCACATCTCCGAGATAGAGGGTACTGGGACATAACATGGCAAGGA 300
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 241 GATAATGTTCTTCATCCACATCTCCGAGCTCGAGGGTACTGGGACATAACATGGCAAGGA 300
Query 301 ACAAACATTCGCCAAGGCGGCTTAGATCGAATCGAAGGAA-CAAATTTTAGAATCATCAC 359
||||||||||| || ||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 301 ACAAACATTCGTCAGGGCGGCTTAGATCGAATCGAAGGAACCAAA-TTTAGAATCATCAC 359
Query 360 TCAAACCCAAGAACAAGTGGAGATATCGTTCTCTAGAACATGGGAGGATGGTCATATTCC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCAAACCCAAGAACAAGTGGAGATATCGTTCTCTAGAACATGGGAGGATGGTCATATTCC 419
Query 420 ATTAAACGTAGACAAGAGGTATATCATACGTAGAAATACTTCAGGAATCTACATGTACGG 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 ATTAAACGTAGACAAGAGGTATATTATACGTAGAAATACTTCAGGAATCTACATGTACGG 479
Query 480 AATCTTCGAGAGACTTCCCGAATGGCCAGAACTCGACATGGGTTTAATTCGAATCGCTTT 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 AATCTTCGAGAGACTTCCCGAATGGCCAGAACTCGACATGGGTTTAATCCGAATCGCTTT 539
Query 540 CAAACTCAACCCTGAGAGATTTCATTACATGGCGGTGGCGGATAATCGACAAAGAGAAAT 599
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAAACTCAACCCTGACAGATTTCATTACATGGCGGTGGCGGATAATCGACAAAGAGAAAT 599
Query 600 GCCAACGGAAGATGACCGTGACATCAAACGTGGTCATGCCAAGGCTCTTGGTTATAAAGA 659
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 600 GCCAACGGAAGATGACCGTGACATCGAACGTGGTCATGCCAAGGTTCTTGGTTATAAAGA 659
Query 660 GGCTGTACAATTGACTCATCCTCATAACTCCATGTTCAAAAACCAGGTGGATGATAAGTA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGCTGTACAATTGACTCATCCTCATAACTCCATGTTCAAAAACCAGGTGGATGATAAGTA 719
Query 720 CCAGTACACATGTGAGATCAAAGACAACAAAGTGCACGGTTGGATCTCAACCAAGTCCCG 779
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 CCAGTACACATGTGAGATCAAAGACAACAAAGTGCACGGTTGGATCTCAACTAAGTCCCG 779
Query 780 TGTCGGCTTTTGGATCATCTCACCAAGCGGTGAATATCGCTCCGGTGGACCGATCAAACA 839
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 780 TGTCGGCTTTTGGATCATCTCACCAAGCGGTGAATATCGCTCTGGTGGACCAATCAAACA 839
Query 840 AGAGCTCACGTCTCACGTCGGACCCACGGCCATCACGACTTTTATAAGCGGACATTATGT 899
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 840 GGAGCTCACGTCTCACGTCGGTCCCACGGCCATCACGACTTTTATAAGTGGACATTATGT 899
Query 900 TGGTGCGGACATGGAGGCACATTACAGACCTGGTGAAGCGTGGAAAAAGGTCTTGGGACC 959
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 900 TGGTGCGGACATGGAGGCACATTACCGACCTGGTGAAGCATGGAAAAAGGTCTTGGGACC 959
Query 960 TGTTTTTATTTACTTAAACTCTGATTCTACCAGCAACAATAAGCCTCAAGATTTGTTATG 1019
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 960 TGTTTTTATTTACTTAAACTCTGATTCTACCGGCAACAATCCTCCTCAAGATTTGTTATG 1019
Query 1020 GGAAGATGCTAAACAACAGTCCGAAAAAGAAGTCAAAGCCTGGCCGTACGATTTTGTAGC 1079
||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1020 GGAAGATGCTAAACAACAGACCGAAAAAGAAGTCAAAGCATGGCCGTACGAATTTGTAGC 1079
Query 1080 ATCCTCTGACTATCTTTCTCGTCGAGAAAGAGGAAGCGTCACTGGTCGTCTACT-AGTCA 1138
||||||||||| ||||||||||||||||||||||| |||||| |||||||| || |||||
Sbjct 1080 ATCCTCTGACTTTCTTTCTCGTCGAGAAAGAGGAATCGTCACCGGTCGTCT-CTTAGTCA 1138
Query 1139 ACGACAGATTCTTGACGCCGGGAAAATCTGCATATGTCGGTTTAGCACCGCCGGGAGAAG 1198
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1139 ACGACAGATTCTTGACGCCGGGAAAATCTGCTTATGTCGGTTTAGCACCGCCGGGAGAAG 1198
Query 1199 CTGGTTCGTGGCAGACAAATACTAAGGGATATCAGTTTTGGACCAAGACGAACGAAACCG 1258
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1199 CTGGTTCGTGGCAGACAAATACTAAGGGATATCAGTTTTGGACCAAGACAAACGAAACCG 1258
Query 1259 GTTACTTCACGATAGAAAACGTTAGACCGGGAACTTACAATCTGTATGGATGGGTTCCTG 1318
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1259 GTTATTTCACGATAGAAAACGTTAGACCGGGAACTTACAATCTGTATGGGTGGGTTCCTG 1318
Query 1319 GTTTTATCGGGGACTTTCGATACCAAAACCTTGTTAACGTAGCTGCAGGTTCAG-TGATT 1377
|||||||||| ||||||||||||||||||| |||||||||||||||||||||| | |||
Sbjct 1319 GTTTTATCGGAGACTTTCGATACCAAAACCGTGTTAACGTAGCTGCAGGTTCACAT-ATT 1377
Query 1378 AGTCTCGGTAGAGTCGTGTACAAGCCACCTAGGAACGGTCCAACGTTATGGGAGATTGGT 1437
| ||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||
Sbjct 1378 ACTCTTGGTAGAGTCGTGTACCAGCCACCTAGGAATGGTCCAACGCTATGGGAGATTGGT 1437
Query 1438 GTACCGGATCGAACCGCTCGAGAATACTTTATACCGGAGCCATACAAGGATACAATGAAT 1497
||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct 1438 GTACCGGATCGAACCGCCCAAGAATACTTTATACCGGAGCCATACAAGAATACAATGAAT 1497
Query 1498 CCGTTATACCTAAACCACACCGACAAGTTTAGACAGTACGGACTGTGGCAACGATACACA 1557
|| ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1498 CC-TTA--CCTAAACCACACTGACAAGTTTAGACAGTACGGATTGTGGCAACGATACACA 1554
Query 1558 GAGTTATATCCAACTCATGATCTCGTCTACACAGTTGGAGTTAGTAACTATAGCCAAGAC 1617
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1555 GAGTTATATCCAACTCATGATCTCGTCTACACAGTTGGAGCTAGTAACTATAGCCAAGAC 1614
Query 1618 TGGTTCTACGCCCAAGTCACAAGGAAAACCGGTGATTTAACGTACGTACCAACAATATGG 1677
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1615 TGGTTCTACGCCCAAGTCACAAGGAAAACCGGTGATTTAACGTACGTGCCAACAACATGG 1674
Query 1678 CAGATCGTGTTTCATCTTCCATACGTAAACTCGCGAGGCAGCTACACATTGCAGGTAGCT 1737
|||||||||||||| |||||||||||||||| || |||| |||||||||||||| |||||
Sbjct 1675 CAGATCGTGTTTCACCTTCCATACGTAAACTGGCAAGGCGGCTACACATTGCAGCTAGCT 1734
Query 1738 TTAGCCTCGGCTGCATGGGCTAATCTACAAGTTCGGATCAATAACCAAAACTCGTGGCCG 1797
||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1735 TTAGCCTCGGCTGCACGGGCTAATCTACAAGTTCGGATCAATACCCAAAACTCTTGGCCG 1794
Query 1798 TTTTTCTCAACGGGTACTATCGGAAAAGACAATGCTATAGCAAGACATGGAATCCATGGA 1857
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1795 TTTTTCTCAACGGGTAATATTGGAAAAGACAATGCTATAGCAAGACATGGAATCCATGGA 1854
Query 1858 ATGTACCGGCTTTATACCATCGATGTGCCTGGAAGGTTGCTAAGAACCGGGACCAACACG 1917
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1855 ATGTACCGGCTTTATAGCATCAATGTGCCTGGAAGGTTGCTAAGAACCGGGACCAACACG 1914
Query 1918 ATTTATCTTCGACAGCCTAAAGCA-CAAGGACCATTTGAAGGTCTTATGTATGATTACAT 1976
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1915 ATTTATCTTCGACAGGCTAAAGCAACA-GGACCATTTGAAGGTCTTATGTATGATTACAT 1973
Query 1977 TCGTCTAGAAGAGCCTTCTAGAGCTTAG 2004
||||||||||||||||||||||| ||||
Sbjct 1974 TCGTCTAGAAGAGCCTTCTAGAGATTAG 2001
> Ahg315485 jgi|Araly1|315485|fgenesh1_pm.C_scaffold_2000518
Length=1938
Score = 1327 bits (718), Expect = 0.0
Identities = 1165/1371 (85%), Gaps = 69/1371 (5%)
Strand=Plus/Plus
Query 7 TCGCAGAAGAAGATCGCTTCGTTATTTATTTGTTTC-CTTCTGTTGCTTCTTCTTCCACT 65
||| |||||||||| |||||||| |||| || ||| |||||||||||||||||||| |
Sbjct 7 TCGAAGAAGAAGATAACTTCGTTAATTATCTG-TTCTTTTCTGTTGCTTCTTCTTCCAAT 65
Query 66 CTCCTTTTCCAAGCCGACAAGGAACTTAGATGGAATAAGTGCAAGAGCTCCAACAGTGCA 125
| | ||||| | ||||||||| ||||||||||||| |||| ||||||||||||| || ||
Sbjct 66 CGCGTTTTCTAGGCCGACAAGAAACTTAGATGGAACAAGTCCAAGAGCTCCAACTGTTCA 125
Query 126 GCAGATAAGAAGCAGACATCATGGGACTAGAGAGGTGATAGTGGACAATGGGA-TAATCA 184
|| ||||||| ||| | ||||| |||||||||||||||||||||||||||| || ||
Sbjct 126 ACAAATAAGAAACAG--A-CATGGAACTAGAGAGGTGATAGTGGACAATGGGATTATTC- 181
Query 185 GAGTCAGTTTCTCGAA-TCCTCAAGGACTTATAACTGGGATCAAATACAAAGGAATTGAT 243
| ||||||||||| || ||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 182 GTGTCAGTTTCTC-AAGTCCTCAAGGACTTATAACTGGCATCAAATACAAAGGAGTCAAT 240
Query 244 AATGTTCTTCA-TCCACATCTCCGAGATAGAGGGTACTGGGACATAACATGGCAAGGA-A 301
||||||| ||| |||||||| |||| | ||||||||||||||||||||||||||||| |
Sbjct 241 AATGTTC-TCAGTCCACATCAACGAGCTCGAGGGTACTGGGACATAACATGGCAAGGAGA 299
Query 302 CAAACATTCGCCAAGGCGGCTTAGATCGAATCGAAGGAAC-AAATTTTAGAATCATCACT 360
||| | ||| || ||| ||||||||||||||||||| ||| ||||||||||| |||
Sbjct 300 -AAAGACTCG---TGGTGGCATAGATCGAATCGAAGGAACTAAA-TTTAGAATCATAACT 354
Query 361 CAAACCCAAGAACAAGTGGAGATATCGTTCTCTAGAACAT-GG-GA--GG--ATGG---T 411
|||| |||||||||||||||||| || ||||||||||||| || || || ||| |
Sbjct 355 CAAAACCAAGAACAAGTGGAGATTTCATTCTCTAGAACATGGGAGAGTGGTTCTGGTTCT 414
Query 412 C--A-TATTCCATTAAACGTAGACAAGAGGTATATCATACGTAGAAATACTTCAGGAATC 468
| | |||||||||||||||||||||||||||||| ||||||| |||| |||||||| ||
Sbjct 415 CATATTATTCCATTAAACGTAGACAAGAGGTATATTATACGTACAAATTCTTCAGGACTC 474
Query 469 TACATGTACGGAATCTTCGAGAGACTTCCCGAATGGCCAGAACTCGACATGGGTTTAA-T 527
||| |||||||| |||||||| |||||||||||||||||| | || ||||| | || |
Sbjct 475 TACGCATACGGAATTTTCGAGAGGCTTCCCGAATGGCCAGAAGTTGAGATGGG-TCAAGT 533
Query 528 TCGAATCGCT-TTCAAACTCAACCCTGA-GAGATTTCATTACATGGCGGTGGCGGATAAT 585
|||||| | | ||||||||| ||| || || |||||||||||||| || |||||| ||
Sbjct 534 TCGAAT-GGTATTCAAACTCGACCAAGATAAG-TTTCATTACATGGCAGTCGCGGATGAT 591
Query 586 CGACAAAGAGAAATGCCAACGGA-AGATGACCGTGACATCAAACGTGGTCATGCCAAGGC 644
||||||||| |||| |||||| | ||||||| || ||| | |||||||||||||||||
Sbjct 592 ATACAAAGAGAGATGCTAACGGACA-ATGACCGCGATATCCATCGTGGTCATGCCAAGGC 650
Query 645 TCTTGGTTATAAAGAGGCTGTACAATTGACTCATCCTCATAACTCCATGTTCAAAAACCA 704
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 651 TCTTGGTTATAAAGAGGCTGTACAATTGATTCATCCTCATAACTCCATGTTCAAAGACCA 710
Query 705 GGTGGATGATAAGTACCAGTACACATGTGAGATCAAAGACAACAAAGTGCACGGTTGGAT 764
|| |||||||| ||||| ||| |||||||||||||||||| ||| ||||| ||||||||
Sbjct 711 AGTTGATGATAAATACCAATACTCATGTGAGATCAAAGACATCAAGGTGCATGGTTGGAT 770
Query 765 CTCAACCAAGTCCCGTGTCGGCTTTTGGATCATCTCACCAAGCGGTGAATATCGCTCCGG 824
|||||| || |||| || ||||||||||| |||||| | || || |||||||||| ||
Sbjct 771 CTCAACTAAATCCCACGTTGGCTTTTGGATTATCTCATCGAGTGGCGAATATCGCTTTGG 830
Query 825 TGGACCGATCAAACAAGAGCTCACGTCTCACGTCGGACCCA-CGGCCAT--CACGACTTT 881
||||||||| |||||||||||||| ||||| ||||| |||| | ||||| || | ||||
Sbjct 831 TGGACCGATGAAACAAGAGCTCACATCTCATGTCGG-CCCAACAGCCATTGCAAG-CTTT 888
Query 882 TATAAGCGGACATTATGTTGGTGCGGACATGGAGGCACATTACAGACCTGGTGAAGCGTG 941
|||||||| |||||||||||| |||||||||| ||| ||||| | ||||||||||||
Sbjct 889 -ATAAGCGGGCATTATGTTGGTACGGACATGGACACACGTTACAAAAGTGGTGAAGCGTG 947
Query 942 GAAAAAGGTCTTGGGACCTGTTTTTATTTACTTAAACTCTGATTCTACCAGCAACAATAA 1001
|||||| ||||| |||||| ||||||||||||||||||| | | | | |
Sbjct 948 GAAAAAAGTCTTAGGACCTATTTTTATTTACTTAAACTCCGG--C-----G-A----T-- 993
Query 1002 GCCTCAAGATTTGTTATGGGAAGATGCTAAACAACAGTCCGAAA-AAGAAGTCAAAGCCT 1060
| || || ||||||||||||||||||| |||||| ||| ||||||| |||||||
Sbjct 994 G----AA--TTA-TTATGGGAAGATGCTAAACGACAGTCT-AAAGAAGAAGTTAAAGCCT 1045
Query 1061 GGCCGTACGATTTTGTAGCATCCTCTGACTATCTTTCTCGTCGAGAAAGAGGAAGCGTCA 1120
||||||||||||||||||||| |||||||| || |||||||||||||||||||| ||| |
Sbjct 1046 GGCCGTACGATTTTGTAGCATTCTCTGACTTTCCTTCTCGTCGAGAAAGAGGAACCGTTA 1105
Query 1121 CTGGTCGTCTACTAGTCAACGACAGATTCTTGACGCCGGGAAAATCTGCATATGTCGGTT 1180
| |||||||| |||||||||||| ||||||| |||||||| | || ||||||||||||||
Sbjct 1106 CCGGTCGTCTTCTAGTCAACGACGGATTCTTAACGCCGGGGAGATTTGCATATGTCGGTT 1165
Query 1181 TAGCACCGCCGGGAGAAGCTGGTTCGTGGCAGACAAATACTAAGGGATATCAGTTTTGGA 1240
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1166 TAGCACCACCGGGAGAAGCTGGTTCGTGGCAGACAAATACTAAGGGTTATCAGTTTTGGA 1225
Query 1241 CCAAGACGAACGAAACCGGTTACTTCACGATAGAAAACGTTAGACCGGGAACTTACAATC 1300
| |||||||||||||||||||| |||| ||| || ||||||||||| |||||||||||||
Sbjct 1226 CAAAGACGAACGAAACCGGTTATTTCAAGATTGATAACGTTAGACCAGGAACTTACAATC 1285
Query 1301 TGTATGGATGGGTTC-CTGGTTTTATCGGGGACTTTCGATACCAAAACCTT 1350
| ||||||||||||| | ||||| ||||| ||||||| |||||||||||||
Sbjct 1286 TCTATGGATGGGTTCAC-GGTTTAATCGGAGACTTTCTATACCAAAACCTT 1335
Score = 732 bits (396), Expect = 0.0
Identities = 536/604 (89%), Gaps = 8/604 (1%)
Strand=Plus/Plus
Query 1405 CCTAGGAACGGTCCAACGTTATGGGAGATTGGTGTACCGGATCGAACCGCTCGAGAATAC 1464
||||| || ||||||||| ||||||||||||||||||||||| |||| || |||||||||
Sbjct 1339 CCTAGAAATGGTCCAACGCTATGGGAGATTGGTGTACCGGATAGAACAGCACGAGAATAC 1398
Query 1465 TTTATACCGGAGCCATACAAGGATACAATGAATCCGTTATACCTAAACCACACCGACAAG 1524
||| ||||||||||||||||| | |||||||| || ||||| ||||||||||| ||||||
Sbjct 1399 TTTGTACCGGAGCCATACAAGAACACAATGAACCCTTTATATCTAAACCACACGGACAAG 1458
Query 1525 TTTAGACAGTACGGACTGTGGCAACGATACACAGAGTTATATCCAACTCATGATCTCGTC 1584
||||| || |||||| | |||||||||||||||||||||||||||| |||||| ||| |
Sbjct 1459 TTTAGGCAATACGGATTATGGCAACGATACACAGAGTTATATCCAAATCATGACCTCATT 1518
Query 1585 TACACAGTTGGAGTTAGTAACTATAGCCAAGACTGGTTCTACGCCCAAGTCACAAGGAAA 1644
|||||| ||||||||||||| ||||||||||||||||||||||| |||||||||| ||||
Sbjct 1519 TACACAATTGGAGTTAGTAAGTATAGCCAAGACTGGTTCTACGCTCAAGTCACAA-GAAA 1577
Query 1645 -ACCGGTGATTTAACGTACGTACCAACAATATGGCAGATCGTGTTTCATCTTCCATACGT 1703
| |||||||| |||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 1578 CAACGGTGATTCGACGTACACACCAACTACATGGCAGATCGTGTTTCATCTTCCATACGT 1637
Query 1704 AAAC-TCGCGAGGCAGCTACACATTGCAGGTAGCTTTAGCCTCGGCTGCATGGGCTAATC 1762
||| | | |||| ||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1638 GAACAT-GAGAGGAAGCTACACATTGCAGCTAGCTTTAGCCTCGGCTGCACGGGCTAATC 1696
Query 1763 TACAAGTTCGGATCAATAACCAAAACTCGTGGCCGTTTTTCTCAACGGG-TACTATCGGA 1821
||||||| ||| |||||||| || || || |||| || ||||||||||| || ||| |||
Sbjct 1697 TACAAGTACGGTTCAATAACGAATACACGAGGCCATTCTTCTCAACGGGCTA-TATTGGA 1755
Query 1822 AAAGACAATGCTATAGCAAGACATGGAATCCATGGAATGTACCGGCTTTATACCATCGAT 1881
| ||| |||||||||||||||||||||||||||||| | ||||||||||||| |||| ||
Sbjct 1756 AGAGATAATGCTATAGCAAGACATGGAATCCATGGACTCTACCGGCTTTATAGCATCAAT 1815
Query 1882 GTGCCTGGAAGGTTGCTAAGAACCGGGACCAACACGATTTATCTTCGACAGCCTAAAGCA 1941
|| |||||||| |||||| |||| |||||||||||||||||||||||||| ||||||||
Sbjct 1816 GTACCTGGAAGATTGCTACGAACAGGGACCAACACGATTTATCTTCGACAATCTAAAGCA 1875
Query 1942 -CAAGGACCATTTGAAGGTCTTATGTATGATTACATTCGTCTAGAAGAGCCTTCTAGAGC 2000
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1876 TCA-GGACCATTTGAAGGACTTATGTATGATTACATTCGTCTCGAAGAGCCTTCTAGAGT 1934
Query 2001 TTAG 2004
||||
Sbjct 1935 TTAG 1938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80408507195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5