BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38040.1
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490811 jgi|Araly1|490811|fgenesh2_kg.7__244__AT4G38040.1 2126 0.0
> Ahg490811 jgi|Araly1|490811|fgenesh2_kg.7__244__AT4G38040.1
Length=1490
Score = 2126 bits (1151), Expect = 0.0
Identities = 1287/1352 (95%), Gaps = 11/1352 (1%)
Strand=Plus/Plus
Query 1 GTGAGCTCACACATAAGACAGCAAAAAGAGCTAAATGCAGAGAGCTTCAGATCCGACCAA 60
||||||||||||| |||||||| | ||||||||||||||||||| ||||||||||||| |
Sbjct 1 GTGAGCTCACACAAAAGACAGCTACAAGAGCTAAATGCAGAGAGATTCAGATCCGACCGA 60
Query 61 ACAATGACGATCGTTAAACCGTCGCAGTTCTCATTCTCCGGCGGCGGATCTTCGCCGTTA 120
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 ACCATGACGATCGTTAAACCGTCGCAGTTCTCCTTCTCCGGCGGCGGATCTTCGCCGTTA 120
Query 121 TGTTCACTCAAAAGCTCACTCCTCACCGTCGCTATTCTCACTTTCATTTCCCTCTTCTAC 180
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TGTTCACTCAAAGGCTCACTCCTCACCGTCGCTATTCTCACTTTCGGTTCCCTCTTCTAC 180
Query 181 CTCTCTCTCAATTCCTTACGCACTTCGCCGCCGTCTCCTGTCATCGTGGTAACACCGATT 240
||||||||||||||| | |||||||||||||| ||||| || ||||||||||| ||||||
Sbjct 181 CTCTCTCTCAATTCCATGCGCACTTCGCCGCCTTCTCCGGTTATCGTGGTAACGCCGATT 240
Query 241 CATGTTCCTCATACCTTCGTGAATG-AGTATAAGACTGATAACGA--A------A-CACC 290
||||||||||| ||||| ||||||| || |||||||||||||||| | | ||||
Sbjct 241 CATGTTCCTCAGACCTTTGTGAATGAAG-ATAAGACTGATAACGACGACGGCGCAGCACC 299
Query 291 GACGATGGAAGAAGAAACCTACTCCGATGTTTATCACTCACCGGAGGCTTTCCGATTGAA 350
||||| ||||| |||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 GACGACGGAAGCAGAAACTTACTCCGATGTTTATCACTCGCCGGAGGCTTTCCGATTGAA 359
Query 351 TTACGCCGAGATGGAGAAGAGATTCAAGGTTTATATTTATCCCGACGGCGATCCAAATAC 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTACGCCGAGATGGAGAAGAGATTCAAGGTTTATATTTATCCCGACGGCGATCCAAATAC 419
Query 411 GTTTTATCAAACGCCGAGGAAAGTCACCGGTAAATACGCTAGTGAGGGGTACTTCTTCCA 470
||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct 420 GTTTTATCAGACGCCGAGGAAAGTTACCGGTAAATATGCTAGTGAGGGTTACTTCTTTCA 479
Query 471 GAACATTAGAGAGAGTCGATTTCGAACCCTAGATCCAGATGAAGCAGATCTCTTCTTCAT 530
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 GAACATTAGAGAGAGTCGATTTCGAACCCTAGATCCAGAGGAAGCAGATCTCTTCTTCAT 539
Query 531 TCCAATCTCTTGTCACAAGATGCGAGGCAAAGGAACATCATATGAAAATATGACTGTGAT 590
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCCAATTTCTTGTCACAAGATGCGAGGCAAAGGAACATCATATGAAAATATGACTGTGAT 599
Query 591 TGTTCAAAACTATGTTGATGGATTGATAGCTAAGTATCCTTATTGGAATAGAACTTTAGG 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGTTCAAAACTATGTTGATGGATTGATAGCTAAGTATCCTTATTGGAATAGAACTTTAGG 659
Query 651 AGCAGATCACTTCTTTGTTACATGTCATGATGTTGGTGTTAGAGCATTTGAGGGATCTCC 710
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 660 AGCAGATCACTTCTTTGTTACCTGTCACGATGTTGGTGTTAGAGCATTTGAGGGATCTCC 719
Query 711 GCTTCTGATTAAGAATACTATTAGGGTTGTGTGCTCACCTAGCTACAATGTTGGTTTCAT 770
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 720 GCTTCTGATTAAGAATACAATTAGGGTTGTGTGCTCACCGAGCTACAATGTCGGTTTCAT 779
Query 771 TCCTCACAAAGATGTTGCTTTGCCTCAAGTTCTTCAGCCATTTGCTCTCCCTGCTGGTGG 830
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 TCCTCACAAAGATGTTGCTTTGCCTCAAGTTCTTCAGCCATTTGCACTCCCTGCTGGTGG 839
Query 831 AAATGATGTTGAGAATCGGACGACTCTTGGTTTTTGGGCTGGTCATCGAAATTCTAAGAT 890
|||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 840 AAATGATGTTGAAAATCGGTTGACCCTTGGTTTTTGGGCTGGTCATCGAAATTCCAAGAT 899
Query 891 ACGGGTTATACTTGCTCATGTGTGGGAAAACGACACAGAGCTTGATATTTCAAACAACAG 950
|||||| |||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 ACGGGTAATACTTGCCCGTGTGTGGGAAAATGACACAGAGCTTGATATTTCAAACAACAG 959
Query 951 AATTAACAGAGCTACAGGGCATTTGGTGTATCAGAAGAGATTCTACCGGACTAAATTCTG 1010
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 960 AATTAACAGAGCTACAGGGCATTTAGTGTATCAGAAGAGATTCTACCGGACTAAATTCTG 1019
Query 1011 CATATGCCCTGGTGGTTCTCAAGTAAACAGCGCTCGCATAACGGACTCGATCCATTACGG 1070
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1020 CATATGCCCCGGTGGTTCTCAAGTCAACAGCGCTCGCATAACGGACTCGATCCATTATGG 1079
Query 1071 ATGTATTCCTGTCATATTATCAGACTACTACGACCTCCCTTTCAACGACATCCTGAATTG 1130
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1080 ATGTATTCCTGTCATATTATCAGACTACTACGACCTGCCTTTCAACGACATCCTGAATTG 1139
Query 1131 GCGAAAATTTGCGGTTGTACTCAGAGAGCAAGATGTCTATAACCTTAAGCAGATCCTCAA 1190
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1140 GCGAAAATTTGCGGTTGTACTCCGAGAGCAAGATGTTTATAACCTTAAGCAGATCCTCAA 1199
Query 1191 GAACATACCTCACTCAGAGTTTGTTTCGTTGCATAACAACTTGGTCAAGGTGCAGAAGCA 1250
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1200 GAACATACCTCACTCAGAGTTTGTTTCGTTGCATAACAACTTGGTCAAGGTGCAAAAGCA 1259
Query 1251 TTTTCAATGGAACTCACCTCCAGTCAAATTCGACGCATTTCACATGATCATGTATGAACT 1310
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TTTTCAGTGGAACTCACCTCCAGTCAAATTCGACGCATTTCACATGATCATGTATGAACT 1319
Query 1311 ATGGTTACGCCACCATGTCGTCAAGTACTGAT 1342
||||||||||||||||||| ||||||||||||
Sbjct 1320 ATGGTTACGCCACCATGTCATCAAGTACTGAT 1351
Score = 209 bits (113), Expect = 4e-53
Identities = 133/142 (94%), Gaps = 4/142 (3%)
Strand=Plus/Plus
Query 1372 TTCTTCAACCGCGTAGATACGGTCCCAAGC--CaaaaaaaGCTAGCATGTACACCTCTTG 1429
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1351 TTCTTCAACCGCGTAGATACAGTCCCAAGCGGAAAAAAAAGCTAGCATGTACACCTCTTG 1410
Query 1430 TAAGTTTTAAATATCATAGCTTATGACAGTAACACGGAACATCAACATTTCATTCTTTGA 1489
|||||||||| ||||||||||||| ||||||||||| |||| ||||||||||||||||||
Sbjct 1411 TAAGTTTTAA-TATCATAGCTTATAACAGTAACACG-AACAACAACATTTCATTCTTTGA 1468
Query 1490 GGAAAATTCATTATTTTTGTGT 1511
|||||||||||| |||||||||
Sbjct 1469 GGAAAATTCATTTTTTTTGTGT 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56602104070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5