BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38050.1
Length=2301
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944034 jgi|Araly1|944034|scaffold_700263.1 3415 0.0
> Ahg944034 jgi|Araly1|944034|scaffold_700263.1
Length=2166
Score = 3415 bits (1849), Expect = 0.0
Identities = 2060/2164 (95%), Gaps = 6/2164 (0%)
Strand=Plus/Plus
Query 1 TTTGAGTCTTTGTTGGAAACAATGGATTCCGGGTCGGGTTTCGATCCGGATACTGGTAAT 60
||||||||||| |||||| |||||||||||||||||||||| |||||||||||||| |
Sbjct 2 TTTGAGTCTTTTTTGGAAGCAATGGATTCCGGGTCGGGTTTGGATCCGGATACTGG---T 58
Query 61 AATAAGGGTAATGGAAGTGGTGGTGGTAATGGTTATGGCGAGAGAAAGTTTGGTGCTTTC 120
|||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 59 AATAAGGGCAAAGGAAGTGGTGGTGGTAATGGTAATGGCGAGAGAAAGTTCGGTGCTTTT 118
Query 121 TTCAAGAGAGTGGAACCCTTTTTACCTAAAAAGGATTTGAATCCGAGAGACTTAAGATCT 180
||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 119 TTCAAGAGAGTAGAACCCTTTTTACCTAGAAAGGATTTGAATCCAAGAGACTTAAGATCT 178
Query 181 TGGGCGAAGAAAACTGGTTTTGTATCCGATTACTCTGGTGAAACCAGCACGAGTACTCGA 240
|||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||
Sbjct 179 TGGGCGAAGAAAACTGGTTTCGTCTCCGATTACTCCGGTGAAACCAGCACCAGTACTCGT 238
Query 241 ACCAAGTTTGGTGAAAGCTCTGATTTTGATTTGCCAAAAGGTAGAGATCAAGTAGTCACC 300
|| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 239 ACTAAGTTTGGTGAAAGCTCTGATTTTGATTTGCGTAAAGGTAGAGATCAAATAGTCACC 298
Query 301 GGGTCGTCTCACAAAACCGAGATCGACCCGATTTTGGGACGAAATAGACCCGAAATCGAA 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GGGTCATCTCACAAAACCGAGATCGACCCGATTTTGGGACGAAATAGACCCGAAATCGAA 358
Query 361 CACGTAACGGGATCTGAGCCTGTGTCTAGAGAAGAAGAAGAGAGGAGACTAAACCGGAAT 420
|||||||| |||||||| || | ||||||||| |||||||||||||||||||||||||||
Sbjct 359 CACGTAACCGGATCTGAACCCGGGTCTAGAGAGGAAGAAGAGAGGAGACTAAACCGGAAT 418
Query 421 GAGGCAACGCCGGAGACTGAGAATGAAGGCGGGAAAATCAATAAGGATTTGGAAAATGGG 480
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 GAGGCAACATCGGAGACTGAGAATGAAGGCGCGAAAATCAATAAGGATTTGGAAAATGGG 478
Query 481 TTTTATTATCCAGGAGGTGGTGGAGAATCATCAGAAGATGGACAATGGCCTAAACCAATT 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTTTATTATCCAGGAGGTGGAGGAGAATCATCAGAAGATGGACAATGGCCTAAACCAATT 538
Query 541 TTGATGAAGTTTGGTCTTAGAGATAATCCTGGCTTTGTTCCACTTATCTATTACGGTCTG 600
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 539 GTGTTGAAGTTTGGTCTTAGAGATAATCCTGGCTTTGTTCCACTTATCTATTATGGTCTG 598
Query 601 CAACACTATCTGTCACTTGTTGGTTCACTTGTGTTTATTCCTCTGGTCATTGTACCAGCC 660
||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 599 CAACATTATCTGTCACTTGTTGGTTCACTTGTGTTTATTCCTCTGGTTATCGTACCAGCC 658
Query 661 ATGGATGGTTCCGATAAAGATACAGCCTCAGTGATTTCAACAATGCTGCTTCTTACTGGA 720
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 659 ATGGATGGTTCCGATAAAGATACTGCCTCAGTGATTTCGACAATGCTGCTTCTTACTGGA 718
Query 721 GTTACAACTATACTTCACTGTTACTTCGGTACTCGGCTTCCGTTGGTTCAAGGAAGCTCT 780
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 719 GTTACAACTATACTTCACTCTTATTTCGGTACTCGGCTTCCGTTGGTTCAAGGAAGCTCC 778
Query 781 TTTGTTTACTTGGCCCCGGTTTTGGTTGTCATCAACTCTGAGGAGTTCAGAAACCTCACT 840
||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 779 TTTGTTTACTTGGCCCCGGTTTTGGTTATCATCAACTCTGAGGAGTTTAGGAACCTCACT 838
Query 841 GAGCATAAATTTCGGGACACAATGAGAGAACTACAGGGGGCTATAATTGTTGGTTCATTA 900
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 839 GAGCATAAATTTCAGGACACAATGAGAGAACTACAGGGGGCTATAATTGTCGGTTCATTA 898
Query 901 TTCCAGTGCATATTAGGATTCAGTGGTCTCATGTCTCTCCTTCTTAGATTTATTAATCCT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTCCAGTGCATATTAGGATTCAGTGGTCTCATGTCTCTCCTTCTTAGATTTATTAATCCT 958
Query 961 GTGGTAGTAGCCCCAACCGTAGCTGCAGTAGGATTAGCATTCTTTAGCTATGGATTTCCA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GTGGTAGTAGCCCCAACCGTAGCTGCAGTAGGATTAGCATTCTTTAGCTATGGATTTCCG 1018
Query 1021 CAAGCCGGCACTTGTGTTGAGATCAGCGTTCCCTTAATACTTTTGCTTCTCATTTTCACA 1080
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1019 CAAGCCGGCACTTGTGTTGAGATCAGTGTTCCCTTAATACTTTTGCTTCTCATTTTCACA 1078
Query 1081 TTGTATCTCCGCGGAGTTTCACTCTTTGGGCATCGCTTATTCCGTATTTACGCGGTGCCA 1140
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1079 TTGTATCTCCGCGGAGTTTCAGTCTTTGGGCATCGCTTATTCCGAATTTACGCGGTGCCA 1138
Query 1141 CTGAGTGCTCTGCTCATATGGACATATGCATTCTTTTTAACTGTTGGTGGAGCATATGAC 1200
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1139 CTGAGTGCTCTGATCATATGGACATATGCATTCTTTTTAACTGTTGGTGGGGCATATGAC 1198
Query 1201 TACAGAGGCTGCAACGCTGACATACCGAGCTCTAACATATTGATAGATGAATGTAAGAAG 1260
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1199 TACAGAGGCTGCAATGCCGACATCCCGAGCTCTAACATATTGATAGATGAATGTAAGAAG 1258
Query 1261 CATGTGTATACTATGAAGCATTGCAGAACAGATGCTTCAAATGCTTGGAGAACTGCTTCT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CATGTGTATACTATGAAGCATTGCAGAACAGATGCTTCAAATGCTTGGAGAACTGCTTCT 1318
Query 1321 TGGGTCAGAATCCCTTATCCATTTCAATGGGGGTTTCCAAATTTTCACATGAGAACTTCT 1380
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1319 TGGATCAGAATCCCTTATCCATTTCAATGGGGGTTTCCAAATTTTCACATGAAAACTTCT 1378
Query 1381 ATCATTATGATCTTTGTGTCTTTGGTTGCATCAGTGGACTCGGTTGGAACATATCATTCT 1440
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1379 ATCATTATGATCTTTGTGTCGTTGGTTGCATCAGTGGATTCGGTTGGAACATATCATTCT 1438
Query 1441 GCATCTATGATAGTGAATGCTAAGCGCCCGACACGGGGAATTGTCAGTAGAGGTATTGCA 1500
|||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1439 TCATCTATGTTAGTTAATGCTAAGCGTCCGACACGGGGAATTGTCAGTAGAGGTATTGCA 1498
Query 1501 TTAGAAGGCTTTTGCAGTTTATTAGCAGGAATCTGGGGTTCGGGTACCGGATCAACCACT 1560
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 1499 TTAGAAGGCTTTTGCAGTTTATTGGCTGGAATCTGGGGTTCGGGTACCGGATCAACTACT 1558
Query 1561 TTAACTGAAAATATTCATACGATCAACATCACTAAGGTGGCTAGCAGAAGAGCTTTGGTG 1620
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
Sbjct 1559 TTAACTGAAAATATTCATACGATCAACATCACCAAGGTGGCTAGCCGAAGAGCTTTGGCG 1618
Query 1621 ATCGGAGCTATGTTCTTAATAGTATTGTCATTTTTAGGAAAATTAGGTGCAATTCTAGCT 1680
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 1619 ATCGGAGCTATGTTCTTAATAGTATTGTCATTTTTAGGAAAGTTAGGCGCAATTCTTGCT 1678
Query 1681 TCAATACCACAGGCTTTGGCTGCTTCAGTATTATGCTTTATATGGGCACTGACAGT-GTC 1739
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 1679 TCAATACCACAGGCTTTGGCTGCTTCAGTATTATGCTTTATATGGGCACTTACAGTAG-C 1737
Query 1740 TCTAGGTCTATCGAATCTACGGTATACGCAAACAGCAAGCTTTAGGAACATAACCATAGT 1799
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1738 TCTAGGTCTATCGAATCTACGGTATACTCAAACAGCAAGCTTTAGGAACATAACCATAGT 1797
Query 1800 TGGAGTCTCATTGTTTCTTGGATTATCCATCCCTGCTTACTTCCAGCAATACCAGCCGCT 1859
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1798 TGGAGTCTCACTGTTTCTTGGATTATCCATCCCTGCTTACTTCCAGCAGTACCAGCCTCT 1857
Query 1860 ATCCAGTCTAATACTACCGAGCTATTATATTCCCTTTGGAGCCGCTTCAAGCGGACCATT 1919
|||||||||||||||||| ||||||||| | ||||||||||| || ||||| ||||||||
Sbjct 1858 ATCCAGTCTAATACTACCTAGCTATTATCTCCCCTTTGGAGCTGCGTCAAGTGGACCATT 1917
Query 1920 CCAAACGGGTATCGAGCAACTTGATTTTGCGATGAACGCAGTGCTATCTTTGAATATGGT 1979
|||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 1918 CCAAACGGGTATCGAGCAACTTGATTTTGCGATGAATGCGGTGCTATCTCTGAATATGGT 1977
Query 1980 TGTAACCTTTCTACTAGCTTTCATACTGGACAACACTGTACCTGGTAGTAAGGAAGAGAG 2039
||||||||||||||| |||||| ||||||||||||||||||| |||||| ||||||||||
Sbjct 1978 TGTAACCTTTCTACTGGCTTTCGTACTGGACAACACTGTACCGGGTAGTGAGGAAGAGAG 2037
Query 2040 AGGAGTATATGTGTGGACAAGAGCCGAGGACATGCAGATGGACCCTGAGATGCGAGCTGA 2099
|||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2038 AGGAGTGTATGCGTGGACAAGAGCCGAGGACATGCAGATGGACCCTGAGATGCAAGCTGA 2097
Query 2100 TTACTCATTGCCAAGAAAATTTGCTCAGATTTTTGGTTGCAGATGTTGTTAAGTAGATAT 2159
||||||||||||||||||| |||||| ||||||||||||| ||||||| || |||||| |
Sbjct 2098 TTACTCATTGCCAAGAAAAGTTGCTCGGATTTTTGGTTGCGGATGTTGCTA-GTAGATGT 2156
Query 2160 TTAA 2163
||||
Sbjct 2157 TTAA 2160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86655307375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5