BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38060.2
Length=893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490808 jgi|Araly1|490808|fgenesh2_kg.7__241__AT4G38060.1 584 3e-166
> Ahg490808 jgi|Araly1|490808|fgenesh2_kg.7__241__AT4G38060.1
Length=778
Score = 584 bits (316), Expect = 3e-166
Identities = 358/378 (95%), Gaps = 3/378 (1%)
Strand=Plus/Plus
Query 242 TCAATCCGGTTCTTGAAATGATGAAGAGACCGATCCCAAGTTGGCCATGGTGGTTATTAG 301
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TCAATCCAATTCTTGAAATGATGAAGAGACCGATCCCAAGTTGGCCATGGTGGTTATTAG 400
Query 302 GAAGTAGAAAAGAGAAAGAAACTGAAGCTCTTAAGTTTCCTACAAAGATAGCTCGAGTAA 361
|| ||||||||||||||||||||||||||||||||||||||| ||| ||| || |||| |
Sbjct 401 GAGGTAGAAAAGAGAAAGAAACTGAAGCTCTTAAGTTTCCTAAAAATATAACTAGAGTTA 460
Query 362 ATAAGAGGAAAGAGCTTGAACTTGAGAGCTTTGGTTCGTCTGGCTCTGAATCTGTAGATG 421
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||
Sbjct 461 ATAAGAGGAAAGAGCTTGAGCTTGAGAGCTTTGGTTCGTCTGGCTCAGAATCTGTAGCTG 520
Query 422 TTGTTGCTGGTGATGGACCTGAATGGTCTGTTGGATGGACTGAGCCACATGGACCTGATT 481
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 TTGTTGCTTGTGATGGACCTGAATGGTCTGTTGGATGGACTGAGCCACATGGACCTGATT 580
Query 482 TCCAAAGTGATGATGAAGGAAATGATGGTGGCTTCTTAGTGTTGGTTCCTTGTTATAGAG 541
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 581 TCCAAAGTGATGATGAAGGAGATGATGGTGGCTTCTTAGTGTTGGTTCCTTGTTATAGAG 640
Query 542 CTGTTGTTGAAGGCTCTAGTAATAATAATAACCAGCTCTTGAGTGCTGTCAAGAATCTCC 601
|||| |||||||| ||| ||||||| || |||||||||||||||||||||||||||||
Sbjct 641 CTGTCGTTGAAGGTTCTGGTAATAACAA---CCAGCTCTTGAGTGCTGTCAAGAATCTCC 697
Query 602 CCAATGGTTTGCCTCCTG 619
||||||||||||||||||
Sbjct 698 CCAATGGTTTGCCTCCTG 715
Score = 207 bits (112), Expect = 8e-53
Identities = 185/216 (86%), Gaps = 22/216 (10%)
Strand=Plus/Plus
Query 9 GACGAATTTGGTCGGAGGGATAATAATGGAAGGAGATGATCGATAATTTGGGTTTTTAGG 68
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2 GACGAATTTGGTCGGAAGG---ATAATGGAAGGAGATGATCGATAATTTGGGTTTTTAGG 58
Query 69 GTTCCTCTTCTCTGATCCTTTTGATAATTTTCACCGtttttttGGGGGTTTTAAAATTTC 128
||| ||||| || ||||||||||| ||||||||| | ||||||||| ||||||||||||
Sbjct 59 GTTTCTCTTGTCAGATCCTTTTGAAAATTTTCACTGAGTTTTTGGGG-TTTTAAAATTTC 117
Query 129 TTCAAATTCTAGTTGATTTCATTTTCAAATTCTGGTGAAACATTATTTGT---G-----T 180
| | ||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 118 T--A-------GTTGATTTCATTTTCAAATTCTGGTGAAACATTCTTTGTTTCGCCGGGT 168
Query 181 TTCAATGGTGAAGCTTAGATCTTGAGCTAAGAATTT 216
|||||||||||||||||||||||||||||||| |||
Sbjct 169 TTCAATGGTGAAGCTTAGATCTTGAGCTAAGA-TTT 203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33090691956
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5