BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38070.1
Length=4542
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888247 jgi|Araly1|888247|Al_scaffold_0007_233 1081 0.0
Ahg353031 jgi|Araly1|353031|fgenesh1_pg.C_scaffold_7000204 593 3e-168
> Ahg888247 jgi|Araly1|888247|Al_scaffold_0007_233
Length=678
Score = 1081 bits (585), Expect = 0.0
Identities = 635/660 (96%), Gaps = 0/660 (0%)
Strand=Plus/Plus
Query 3883 TTAGAGCAAGGGATGCGTCCGATTTCACGATGTTACAATCCAACCGCGTATTCGACAACA 3942
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 19 TTAGAGCAAGGGATGCGTCCGATTTCACGATGCTACAATCCAACCGTGTATTCGACAACA 78
Query 3943 ATGGGAAGAAGTTTCTTCGCAGGTGCAGCCACAAGCAGCAAGCTATTCTCCAGAGGTTTC 4002
|||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 ATGGGAGGAAACTTCCTCGCAGGTGCAGCCACAAGCAGCAAGCTATTCTCCAGAGGTTTC 138
Query 4003 TCAGTCACAAAGCCAAAATCTAAAACCGAATCTAAAGAAGTTGCTGCAAAGAAACATAGT 4062
|||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||
Sbjct 139 TCAGTCACAAAGCCAAAATCGAAAAGCGAATCTAAAGAAGTCGCTGCAAAGAAACATAGT 198
Query 4063 GACGCAGAGAGAAGGAGACGGCTTCGGATTAATTCCCAGTTTGCAACTCTCCGCACCATT 4122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 GACGCAGAGAGAAGGAGACGGCTTCGGATTAATTCCCAGTTTGCAACTCTCCGCACCATT 258
Query 4123 CTTCCAAACTTAGTCAAACAAGATAAAGCATCTGTGCTTGGAGAGACTGTCAGGTACTTC 4182
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 259 CTTCCAAACTTGGTCAAACAGGATAAAGCATCTGTGCTTGGAGAGACTGTCAGGTACTTC 318
Query 4183 AATGAATTGAAAAAGATGGTTCAAGACATACCAACCACACCATCTTTAGAAGACAACTTG 4242
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 319 AACGAATTGAAAAAGATGGTTCAGGACATACCAACCACACCATCTTTAGAAGACAGCATG 378
Query 4243 AGATTGGACCACTGTAATAACAACAGAGACTTGGCAAGAGTCGTGTTCAGTTGTAGCGAC 4302
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 379 AGATTGGGCCACTGTAATAACAACAGAGACTTGGCAAGAGTTGTGTTCAGTTGTAGCGAC 438
Query 4303 AGAGAAGGGCTAATGTCGGAGGTTGCAGAGTCAATGAAAGCAGTGAAAGCAAAGGCGGTG 4362
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 439 AGAGATGGGCTAATGTCGGAGGTTGCAGAGTCGATGAAAGCAGTGAAAGCAAAGGCGGTG 498
Query 4363 AGAGCTGAGATCATGACAGTAGGTGGAAGAACCAAGTGTGCCTTGTTTGTTCAAGGTGTC 4422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 AGAGCTGAGATCATGACAGTAGGTGGAAGAACCAAGTGTGCCTTGTTTGTTCAAGGTGTA 558
Query 4423 AATGGGAATGAAGGATTGGTGAAGCTCAAGAAATCGTTGAAACTTGTAGTGAATGGTAAA 4482
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 559 AATGGGAATGAAGGATTGGTCAAGCTCAAGAAATCGTTGAAACCTGTAGTGAATGGTAAA 618
Query 4483 TCATCATCAGAGGCGAAAAACAACAACAATGGAGGATCGTTGTTAATTCAGCAGCAATGA 4542
|||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct 619 TCATCATCAGAGGCGAAAAACAACAACATTGGAGGATCGTTGTTGACTCAGCAGCAATGA 678
> Ahg353031 jgi|Araly1|353031|fgenesh1_pg.C_scaffold_7000204
Length=639
Score = 593 bits (321), Expect = 3e-168
Identities = 463/526 (88%), Gaps = 32/526 (6%)
Strand=Plus/Plus
Query 3125 GAGAAGGTGCTTCGCAGAACCGCACAGCACC-CGACTTAA-A-ACCGATCGAAACGTGCC 3181
|||||||| ||||||| ||||||||| | || |||| || | |||||||||||||||||
Sbjct 97 GAGAAGGTACTTCGCACAACCGCACATC-CCTCGAC--AAGAGACCGATCGAAACGTGCC 153
Query 3182 GTAAACTCCTCAAATCA-CG-T-GAGTTTCTCAGCGTTCGGTATATCATTCAAGTGAATC 3238
|||| | |||| || | | || | ||||||||||||||||||||||| ||||||
Sbjct 154 ATAAA--GAT--TATCAGCGTTCG-GTATATCAGCGTTCGGTATATCATTCAAATGAATC 208
Query 3239 AGCTGCTAAAAAGTAAACGGCATGATGATGATGATCAGTTTGAGCAAGTGGAAGCCATCT 3298
|| || ||| |||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 209 AGTTGGTAAGAAGTAAACGG--T-ATGATGATGATCAGTTTGAGCAAGTGGAAGCCATCT 265
Query 3299 GCGACCTTCTCATCGCCGCAGAAAACCGGCTTCCAAACGGTTTAAAGGATTATTACGGCA 3358
||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 266 GCGACGTTCTCATCGCCGCAGAGAACCGGCTTCCAAACGGGTTAAAGGATTATTACGGCA 325
Query 3359 TGATTCGGGCGAACCGATTCGGACCAGTTTTATTGGAGGACTTCGAGAAATTGACGAAAC 3418
||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
Sbjct 326 TGATTAGGGCGAACCGATTCGGACCGGTTTTATTGGAGGACTTCGAGAAATTGATGAAGC 385
Query 3419 TTCTTGATAAGAAGCATAACTATTTCCCATTTAGCCAAGAAGCTGCTGATAAAGCCTCGC 3478
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 386 TTCTTGATAAGACGCATAACCATTTCCCATTTAGCCAAGAAGCTGCTGATAAAGCCTCGC 445
Query 3479 TAGCTTGGTCTCTGCTGTCTAAGCCACCCATCAAAGCCCATTACGATCTTGCTATCTCCG 3538
||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 446 TAGCTTGGTCTTTGCTGTCTAAGCCACCCATCAAGGCCCATTACGATCTCGCTATCTTCG 505
Query 3539 CATTTTTCGGAGAGTGTAGCAAAGTAAAACGAAAGAT-------C-T---T--T--ATCC 3583
|||||| ||||||||||||||||| |||||||||||| | | | | ||||
Sbjct 506 CATTTTGCGGAGAGTGTAGCAAAGGAAAACGAAAGATGGGTTTTCATGAATCCTTTATCC 565
Query 3584 CCAAGAAACAAATTGAGGTAGTGGTTATTTCCGATGACGACGACGA 3629
||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 566 CCAAGAAACAAATTGAGGTGGTGGTTATTTCTGATGACGATGACGA 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 171829942095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5