BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38080.1
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490805 jgi|Araly1|490805|fgenesh2_kg.7__238__AT4G38080.1 941 0.0
> Ahg490805 jgi|Araly1|490805|fgenesh2_kg.7__238__AT4G38080.1
Length=649
Score = 941 bits (509), Expect = 0.0
Identities = 589/626 (94%), Gaps = 11/626 (2%)
Strand=Plus/Plus
Query 1 AACCAACAAGAAGTAGTCAAAGCACAATACAGCAGTAGTAGTAGCACCATGGCTCCTCTC 60
|||||||||||| |||||||||| ||||||||||| | |||||||||||| ||||||||
Sbjct 1 AACCAACAAGAACTAGTCAAAGCGCAATACAGCAG-A--AGTAGCACCATGACTCCTCTC 57
Query 61 AAGAACTCCTTTGTAACATCTCTGGTCATTGCACTAACATTCACAAGCTTCTTCACCAGC 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 58 AAGAACTCCTTTGTAACATCTCTTGTCATTGCACTAACATTCACAAGCTTCTTCACGAGC 117
Query 121 CTATCCGCTCATCGTCACCTTCTCCAATCAACACCAGTGACTCAGCCTCCAGCTTTAACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTATCCGCTCATCGTCACCTTCTCCAATCAACACCAGTGACTCAGCCTCCAGCTTTAACA 177
Query 181 TTCCCACCTCTGCCCAAAACCACTATGCCACCGGTTCCTTCTCTACCAACTCCAGGACAA 240
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 178 TTCCCACCTCTGCCCATAACCACTATGCCACCGCTTCCTTCTCTACCAACTCCAGCACAA 237
Query 241 CAAACGTTGCCACAGCCACAACCAACTCTGCCACAGCCCACTGGG-T-----TGCCACCG 294
||||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 238 CAAACGTTGCCACAGCCACAACCAACTCTGCCACAGCCCACCGGGTTGCCAATGCCACCA 297
Query 295 ATGCCGAGCACACAGATACCATCATTGCCCAACCAGGTGCAGCCCACAATCCCTAACATT 354
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 298 ATGCCGAGCACACAGATACCTTCATTGCCCAACCCGGTGCAGCCCACAATCCCTAACATT 357
Query 355 CCACAGATCAACTTCCCTAGCAACTTTCCCTTCAACTTTCCTTTCAACATTCCTTTCCTT 414
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 358 CCACAGGTCAACTTCCCTAGCAACTTCCCCTTTAACTTTCCTTTCAACATTCCTTTCCTT 417
Query 415 ACTCCACCACCTTCAAAGTAAGAGAAGTGA-AAGCTAGCTCATTAGCTGTCACAGATCAT 473
|||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||
Sbjct 418 ACTCCACCACCTTCTAAGTAAGAGAAGTGACAAGCTAGCTCTTTAGCTGTCACAGATTAT 477
Query 474 TATCCTTCTTTCCTGAGACAGCTTTGGATCACACACTCTGCTTTGTGTCAGTTTGTATAC 533
||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 478 TATCCTTCTCTCCTGAGACAGCTTTGTATCACACACTCTACTTTGTGTCAGTTTGTATAC 537
Query 534 ACATATATGTATTCTTTTGCTGTTGTTTGGTGTCATCGTCCTCTTTGTTGTTGCTTCCAT 593
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 538 ACATATATGCATTCTTTTGCTGTTGTTTGGTGTCGCCGTCCTCTTTGTTGTTGCTTCCAT 597
Query 594 AAGTCAAGTTCCTTTTGTAATATACA 619
||||| ||||| |||||||||||||
Sbjct 598 GAGTCA-GTTCCCTTTGTAATATACA 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23788700208
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5