BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38090.1
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490803 jgi|Araly1|490803|fgenesh2_kg.7__236__AT4G38090.1 1170 0.0
> Ahg490803 jgi|Araly1|490803|fgenesh2_kg.7__236__AT4G38090.1
Length=789
Score = 1170 bits (633), Expect = 0.0
Identities = 743/792 (94%), Gaps = 23/792 (3%)
Strand=Plus/Plus
Query 6 GCAAAAAGGCAACAATCAGATGTGGGTGGGCGTACCGGTAGCAGCAGCAGTAACCACCGT 65
|||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||
Sbjct 2 GCAAAAAGACAACAATCAGATGCGGGTGGGCGTACCGGTAGCAGCAG--G-AACCACCGT 58
Query 66 CG--G-CG------GCCGCAGAATACCGGTGTTAGTGGCTGCATCAGGCAAGAGGTCGAT 116
|| | || |||||||||| |||||| ||||||||||||| |||||||| |||||
Sbjct 59 CGCCGTCGTTCTCCGCCGCAGAATCCCGGTGATAGTGGCTGCATCCGGCAAGAGCTCGAT 118
Query 117 GGCTTCGAATTC-GG----G--T--TCATTCACGACACTAAAAGAAACCGTATCCGTGGA 167
|||||||||||| || | | |||||||||||| | ||||||| ||||||||||||
Sbjct 119 GGCTTCGAATTCGGGTTCAGATTCATCATTCACGACAATCAAAGAAATCGTATCCGTGGA 178
Query 168 GAAAGAGATAAAGAAGAGCAAGTTCATCGCAATCGCTGGACCAATCTCCTCCGAGCAATC 227
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 179 GAAAGAGATAAAGAAGAGCAAGTTCATCGCAATCGCTGGTCCAATCTCCACCGAGCAATC 238
Query 228 AGCTCAAATGTTCCTCTCTCAGGTCCGTGATCCTCGCGCTTCTCACAATTGCTGGGCTTA 287
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CGCTCAAATGTTCCTCTCTCAGGTCCGTGATCCTCGCGCTTCTCACAATTGCTGGGCTTA 298
Query 288 TAAGATCGGTGATCATCACCATCGATGTAGCGATGATGGTGAGCCATCTGGCACAGCAGG 347
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 299 TAAGATCGGTGATCAACACCATCGATGTAGCGATGATGGTGAGCCATCAGGCACAGCAGG 358
Query 348 GAAGCCGATTCAGTCTGCTATTCTCTCTTCTGGATTAGACAGAGTTATGGTTGTTGTCAT 407
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 359 GAAGCCGATTCAGTCTGCAATTCTGTCTTCTGGATTAGACAGAGTTATGGTTGTTGTCAT 418
Query 408 TAGGTATTTTGGGGGAATCAAACTTGGAACTGGAGGTCTTGTTAGAGCATATGGTGGTGT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TAGGTATTTTGGGGGAATCAAACTTGGAACTGGAGGTCTTGTTAGAGCATATGGTGGTGT 478
Query 468 TACATCTGATTGCTTGAAAACTGCTCCTTCTTGTCTGGTCAAGTCCAAAGTTCAAATGGG 527
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 479 TACATCTGATTGCTTGAAAACTGCTCCTACTTGTCTTGTCAAGTCCAAAGTTCAAATGGG 538
Query 528 AGTTGAGGTCACATTTGATCTTTTAGGTGTTCTTTACAATCAGCTGCAATCGTGTCACGC 587
||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 539 AGTCGAGGTGACATTTGATCTTTTAGGTGTTCTTTACAATCAGCTGCAGTCGTGTCACGC 598
Query 588 TGAAGACATCAAGGAAGACTATGATACTGGTAAAGATGGTACTGCAATGGTTTCTTTCAA 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGAAGACATCAAGGAAGACTATGATACTGGTAAAGATGGTACTGCAATGGTTTCTTTCAA 658
Query 648 GGTTGAGTTTGACCTTGTTGATAAATTAGAGGATGCTATCAAATCAAACTGTAGACGAGA 707
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GGTTGAATTTGACCTGGTTGATAAATTAGAGGATGCTATCAAATCAAACTGTAGACGAGA 718
Query 708 CCTTGTCTTTTACAAAACTTAGGGTAAAAGCATTCTCATGTAATCAGTTACAGAATAAAG 767
||||||||||||||||||||||||| || ||||| |||||||||| ||||||||||||||
Sbjct 719 CCTTGTCTTTTACAAAACTTAGGGTTAA-GCATTGTCATGTAATC-GTTACAGAATAAAG 776
Query 768 CTTCtttttttt 779
||| ||||||||
Sbjct 777 CTTATTTTTTTT 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29011539837
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5