BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38100.1
Length=773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944022 jgi|Araly1|944022|scaffold_700251.1 981 0.0
> Ahg944022 jgi|Araly1|944022|scaffold_700251.1
Length=625
Score = 981 bits (531), Expect = 0.0
Identities = 597/628 (95%), Gaps = 8/628 (1%)
Strand=Plus/Plus
Query 8 TTTGATGCATCCGTACGAAAATGGAGCTCTGCACCAGGTCTACCACAATCATCACTCATC 67
|||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1 TTTGATGCGTCCGTACGAAAATGGAGCTCTGCACCAGGTCAACCACCGTCATCACTCATC 60
Query 68 TCCC-TGCGAGCTTCAACGGCCATGGATATCTAGCGGGAAAATCTGTTGATAGAATCT-- 124
|||| || |||| ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 61 TCCCTTG-GAGCATCAACGGCCATGGATATCTAGCGGGGAAATCTGTTCATAGAATCTCA 119
Query 125 C-ACTTCCTCTCCAGCGAAACGTTGCGTCTCTCGTTCTTCAATCCCGCACGTTGCGTTGT 183
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTACTTCCTCTCCATCGAAACGTTGCGTCTCTCGTTCTTCAATCCCGCACGTTGCGTTGT 179
Query 184 AGTAGAAAGTTTCCAGGAGAAACAGTTACTGAAGAAACATCAACAGGAGTCAATGAGTTT 243
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 AGTAGAAAGTTTCCAGGAGAAACAGTTTCTGAAGAAACATCAACAGGAGTCAATGAGTTT 239
Query 244 GGTGTGGAGGATCGTGATGGAGTAGTTGTTGCAGCCGAAGAGAAAAAC-TCGAATAGTGA 302
||| |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 240 GGTCTGGAGGATCGTGATGGAGTAGTTGTTGCAGTCGAAGAG-AAAACTTCGAATAGTGA 298
Query 303 AGCTCCTCAAGCTGAAGATGAGGAAACTCAAGCCCTAGAGTTTTTGAACGATATTAAGCT 362
|||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 299 AGCTTCTCAAGCTGAAGATGACCAAACTCAAGCCCTAGAGTTCTTGAACGATATTAAGCT 358
Query 363 GGACTCAGACAAGACATATTCAATCCTGCTCTATGGGAGTGGTGCGATAGTTGCTCTCTA 422
|||||||| |||||| ||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 359 GGACTCAGGCAAGACGTATTCAATCTTGCTCTATGGGAGTGGTGCAATAGTTGCTCTCTA 418
Query 423 CTTAACGTCTGCAATCGTCAGTTCACTCGAAGCAATCCCTCTGTTTCCTAAGCTAATGGA 482
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTTAACTTCTGCAATCGTCAGTTCACTCGAAGCAATCCCTCTGTTTCCTAAGCTAATGGA 478
Query 483 AGTAGTTGGTCTCGGATACACACTCTGGTTCACTACCCGTTATCTGCTATTTAAGAGGAA 542
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AGTGGTTGGTCTCGGATACACACTCTGGTTCACTACCCGTTATCTGCTATTTAAGAGGAA 538
Query 543 CAGAGAAGAACTCAAGACAAAAGTTAGTGAAATCAAAAAGCAGGTTCTTGGGTCTGATAG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CAGAGAAGAACTCAAGACAAAAGTTAGTGAAATCAAAAAGCAGGTTCTTGGGTCTGATAG 598
Query 603 TGAGTGAGTAGTTTTGCTTCtttttttt 630
|||||||||||||||||| |||| |||
Sbjct 599 TGAGTGAGTAGTTTTGCTA-TTTTATTT 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28515941916
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5