BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G38140.1

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg327776 jgi|Araly1|327776|fgenesh1_pm.C_scaffold_7000003           667    0.0  


> Ahg327776 jgi|Araly1|327776|fgenesh1_pm.C_scaffold_7000003
Length=435

 Score =  667 bits (361),  Expect = 0.0
 Identities = 406/428 (95%), Gaps = 2/428 (0%)
 Strand=Plus/Plus

Query  1    ATGATTTCAATGTTGTTTCCGCGGTCGCCTTTGTGCACAGCAGCCATAGTATTCTACACA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGATTTCAATGTTGTTTCCGCGGTCGCCTTTGTGCACAGCAGCCATAGTATTCTACACA  60

Query  61   TGTGTGTGCATTCCCTTGGGGAGGTTGAAGAAGAATGGTGGAGATGCGGATGCGCATGAT  120
            ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct  61   TGTGTGTGCATTCCCTTAGGGAGGTTGAAGAAGAATGGTGGAGATGCAGAAGCGCATGAT  120

Query  121  GATGACGGTTACAACCTAGTGGGAGTGATGTTTGGGGACAAGGAAAAGGAGGAGGAAATT  180
            |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GATGACGGTTACCATCTAGTGGGAGTGATGTTTGGGGACAAGGAAAAGGAGGAGGAAATT  180

Query  181  TGCTGCCCCATATGCCTGGTGGAGTTTGAGGCTGAGGATGCGGTGACCCATCTTCCCAGA  240
            ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct  181  TGCTGCCCCATATGCCTGGCGGAGTTTGAGGCTGAGGATGCGGTGACCCGTCTTCCCAGA  240

Query  241  TGCGCTCATCTCTTCCATATCAATTGCATAGAACCTTGGCTTCTCCGTGGCCACCTCACT  300
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  241  TGCGCTCATCTCTTCCACATCAATTGCATAGAACCTTGGCTTCTCCGTGGCCATCTCACG  300

Query  301  TGCCCTCTCTGCAGATCATTTGTATTGGCTCCAACTCCTCCTACACAAAATGTCAATAAT  360
            |||||||||||||||||||||||||||||||||||||||  ||| |  ||||||||||||
Sbjct  301  TGCCCTCTCTGCAGATCATTTGTATTGGCTCCAACTCCTTATACGCGCAATGTCAATAAT  360

Query  361  G-CACActcctcttccaccttgtatctctctatcttcttctttttctgtatctttctcca  419
            | | |||||||||||||||||||||||| |||||||||| ||||||||  ||||||||||
Sbjct  361  GTC-CACTCCTCTTCCACCTTGTATCTCCCTATCTTCTTTTTTTTCTGCCTCTTTCTCCA  419

Query  420  tctACTTG  427
            ||| ||||
Sbjct  420  TCTTCTTG  427



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15796413846


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5