BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38150.1
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490572 jgi|Araly1|490572|fgenesh2_kg.7__5__AT4G38150.1 1862 0.0
> Ahg490572 jgi|Araly1|490572|fgenesh2_kg.7__5__AT4G38150.1
Length=1463
Score = 1862 bits (1008), Expect = 0.0
Identities = 1281/1402 (91%), Gaps = 62/1402 (4%)
Strand=Plus/Plus
Query 18 TTTTCGAATCAGCGGCAGATAACGATGGTG-CCTTCCTCCAAAGCCGTCGTTTTTGCAAG 76
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||
Sbjct 1 TTTTCGAATCAGCGGCAGATAACGATGGTGTCC-TCCTCGAAAGCCGTCGTTTTTGCGAG 59
Query 77 GCAGATGGCGAAGCAGATTCGTGTTACGACGCCGTCGATGTCCGCAACACGCTTTCTCTC 136
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 GCAGATGGCGAAGCAGATTCGTGTTACGACGCCGTCGATTTCCGCAACACGCTTTCTCTC 119
Query 137 AACGGGCGACAATGGTCAAGTAGACGAGCAGCAGAACCCTCCAGAGCCCTTACCCAACAG 196
||||||||||| ||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 120 GACGGGCGACAAAGGTCAAG-A-A-AAGCAGCAGAACCCTCCAGAGCCCTTACCCAACAG 176
Query 197 ACCCTTGCGAGGGGAGAGATCTTCCAACTCTCACAGAGAACCACCCGCTAGACAAGCCCA 256
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 177 ACCCTTGCGAGGTGAGAGATCTTCCAACTCTCACAGAGAACCACCTGCTAGACAAGCCCA 236
Query 257 CAACCTTGGAAAGAGTGATACTACTCTGTCTGACGATGGCTTCCTCGAACAGTTCAAGCT 316
| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 237 CGACCTTGGAAAGATTGATAATACTCTGTCTGACGATGGCTTCCTCGAACAGTTCAAGCT 296
Query 317 TGGAGTCAATCAGGATTCACGGGAAACCCCCAAACCGGAACAATACCCGCAGGAGCCCTT 376
||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |||||
Sbjct 297 TGGAGTCAATCAGGATTTACAGGAAACCCCCAAACCGGAACAATACCCACAGGACCCCTT 356
Query 377 ACCGCCGCCTGAGGATTCCGATGAGATCTTCAAGAAGATGAAGGAAGGAGGTCTCATCCC 436
|| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 357 ACTGCCGCCTGAAGATTCCGATGAGATCTTCAAGAAAATGAAGGAAGGAGGTCTCATCCC 416
Query 437 TAACGCCGTCGCCATGCTTGACGGCCTCTGCAAAGATGGGCTTGTACAAGAGGCCATGAA 496
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 TAACGCGGTCGCCATGCTTGACGGCCTCTGCAAAGATGGGCTTGTACAGGAGGCCATGAA 476
Query 497 GCTTTTCGGATTGATGCGTGACAAGGGTACAATCCCTGAGGTCGTTATCTACACTGCTGT 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GCTTTTCGGATTGATGCGTGACAAGGGTACAATCCCTGAGGTCGTTATCTACACTGCTGT 536
Query 557 CGTTGAGGCCTTTTGCAAGGCTCATAAAATTGAAGACGCTAAGAGGATTTTCAGGAAAAT 616
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CGTTGAGGGCTTTTGCAAGGCTCATAAAATTGAAGACGCTAAGAGGATTTTCAGGAAAAT 596
Query 617 GCAGAACAATGGGATTGCCCCTAATGCCTTCAGCTACGGTGTGTTGGTTCAGGGATTGTA 676
||||| |||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 597 GCAGACCAATGGGATTGCTCCAAATGCCTTCAGCTATGGTGTGTTGGTTCAGGGATTGTA 656
Query 677 TAATTGCAACATGCTTGACGATGCTGTTGCTTTCTGTAGTGAGATGCTTGAGTCTGGTCA 736
|||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||
Sbjct 657 TAATTGCAACATGCTTGACGATGCTGTTACTTTCTGTTGTGAGATGCTCGAGTCTGGTCA 716
Query 737 CTCTCCTAACGTCCCCACTTTCGTTGAATTGGTTGATGCCTTGTGCAGAGTAAAGGGGGT 796
|||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct 717 CTCTCCCAACATCCCCACTTTCGTTGGATTGGTTGATGCCTTGTGCAGAGAAAAGGGCGT 776
Query 797 TGAACAAGCCCAGTCCGCTATTGATACCTTAAACCAAAAAGGATTTGC-CGTTAATGTTA 855
||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||
Sbjct 777 TGAACAAGCCCAGTCCGCTATTGATGGCTTAAACCAAAAAGGATTTGCTC-TTAATGTTA 835
Query 856 AGGCTGTCAAGGAGTTCATGGATAAAAGGGCTCCATTTCCGTCTTTGGCTTGGGAAGCCA 915
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AGGCTGTCAAGGATTTCATGGATAAAAGGGCTCCATTTCCGTCTTTGGCTTGGGAAGCCA 895
Query 916 TCTTCAAGAAGAAACCAACCGAGAAACCCTTCTGATTT----A----CTTACGCAGTGCT 967
| |||||||||||||||||||| |||||||| |||||| | |||||||||||||
Sbjct 896 TTTTCAAGAAGAAACCAACCGACAAACCCTTGTGATTTTCCTATTTACTTACGCAGTGCT 955
Query 968 GTTAAGTATGCCGTCTCAGTAAGATGTTTTCTTGACTTGTAATAACAACCTTGAAAGTGA 1027
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 956 GTTAAGTATGCCGTCTCAGTAAGATGTTTTCTTGACTTGTAAAAACAACCTTGAAAGTGA 1015
Query 1028 AAATCAATATGAGTCTTCCTT-TTTCTGCTTGGAGTCAGGTATCGAGttttttttttttt 1086
|||||||| || ||||| ||| ||| ||||||||||| |||||| ||||||| |||| |
Sbjct 1016 AAATCAATCTGCGTCTTTCTTCTTTTTGCTTGGAGTCTGGTATCAAGTTTTTCTTTTGT- 1074
Query 1087 CCTATGTCCTTTAAAAATGTGTAGTTGTAGATGTAGTTCCCTGTTTTCATGCATTCTAAT 1146
||| | | |||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 1075 CCT----C-T--AAAA-TGTGTAGTTGTAGATGTAATTACCTGTTTTCATGCATTCTAAT 1126
Query 1147 ATTGATTGCAAGTTCAATGAAT--A-GCGTTGTGTTGGCGGTATAGGG-TGTCAAA---- 1198
|||||||||||||||||||||| | || |||||||||||| |||||| |||||||
Sbjct 1127 ATTGATTGCAAGTTCAATGAATGGATGCATTGTGTTGGCGGCATAGGGGTGTCAAAAGGA 1186
Query 1199 --TTATGCTTGACGCTTATCAGTCATTACCAATGATGTATGTGACTGTCTATTGCAAATG 1256
|||||||||| |||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 1187 AATTATGCTTGAAGCTTATCAGTGATTACCAATGATGTATGTGACTGT-T---GCAAATT 1242
Query 1257 TGGCCGACTTCATGAACAAATATGAACAATAGTATCATTGGTTACATACACCAGGCATAA 1316
||||||| ||||||||||| || | || | ||||||||||||||| |||||||||
Sbjct 1243 TGGCCGAGTTCATGAACAA-TA-G-----TA-T--CATTGGTTACATACATCAGGCATAA 1292
Query 1317 AACTACATCATCCTCCAAAGGCACTGCTGATCTCAGGGACGTGGAGGTCTGTTCTGTAGA 1376
||||||||||| ||||||||||||||||||||| | | ||| |||| | |||
Sbjct 1293 AACTACATCATTCTCCAAAGGCACTGCTGATCT--G--A-GTGT---TCTG----G-AGA 1339
Query 1377 AGCTGGCGCTATATTGAATACA 1398
||||||||||||||||||||||
Sbjct 1340 AGCTGGCGCTATATTGAATACA 1361
Score = 147 bits (79), Expect = 3e-34
Identities = 93/99 (94%), Gaps = 3/99 (3%)
Strand=Plus/Plus
Query 1442 GGAGATCTTTACTTGATTTGGTCGGCTGTATTATATTCGTGAACTCGGAAGTCAAGGCCT 1501
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1367 GGAGATCTTTACTTGATTTGGTCGGCTGTATTATATTCGTGAACTCA-AAGTCAAGGCCT 1425
Query 1502 GTCTT-GATGGAAGAATGACTCCTTACTTTTAATATATA 1539
|| || | ||||||||||||||||| |||||||||||||
Sbjct 1426 GTTTTAG-TGGAAGAATGACTCCTTGCTTTTAATATATA 1463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58125713870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5