BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38160.3
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490575 jgi|Araly1|490575|fgenesh2_kg.7__8__AT4G38160.2 1596 0.0
> Ahg490575 jgi|Araly1|490575|fgenesh2_kg.7__8__AT4G38160.2
Length=1430
Score = 1596 bits (864), Expect = 0.0
Identities = 944/983 (96%), Gaps = 4/983 (0%)
Strand=Plus/Plus
Query 76 TATGGAGGTGACAAATACGAGCAGCATCATGTGGTTCTTCAGGGACAAAGGTTTCGATGA 135
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 11 TATGGAGGTCACAAATACCAGCAGCATCATGTGGTTCTTCAGGGACAAAGGTTTCGATGA 70
Query 136 TCCGAGTATCGACAAGATGTTGAGAAAATGCAAACAGTTGGAAAAGGCTCAAAGCGATGT 195
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 71 TCCGAGTATCGACAAGATGTTGAGAAAATGCAAGCAGTTGGACAAGGCCCAAAGCGATGT 130
Query 196 GGCATCAGAAAACTGGGACTACCTGAGTAACATTGTTGGTATCCAAGAGAGAAAACTCCC 255
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 131 GGCATCTGAAAACTGGGACTACCTGAGGAACATTGTCGGTATCCAAGAGAGAAAACTCCC 190
Query 256 TTACATCGTCTCTCGATGCCCCAAAATCCTGACTTTACGCCTCGATGAGAGACTCATCCC 315
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 TTACATCGTCTATCGATGCCCCAAAATCCTGACTTTACGCCTCGATGAGAGACTCATCCC 250
Query 316 GATGGTCGAGTGCCTCTCCAGTCTTGGAAGGAATCCTCGGGAAGTTG-CTTCCGCCATTA 374
||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||
Sbjct 251 CATGGTCGAGTGCCTCTCCAGTCTAGGAAGGAATCCTCGGGAAG-TGTCTTCCGCCATTA 309
Query 375 CCAAATTTCCTCCAATACTCTCTCATAGCGTGGAGGAGAAACTCTGTCCCCTTCTTGCTT 434
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 310 CCAAGTTTCCTCCAATACTCTCTCATAGCGTGGAGGAGAAACTCTGCCCCCTTCTTGCTT 369
Query 435 TCTTTCAAGCGTTAGGTGTGCCTGAGACTCAACTTGGCAAAATGATACTTTTTAACCCAA 494
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 TCTTTCAAGCGTTGGGTGTGCCTGAGACTCAACTTGGCAAAATGATACTTTTTAACCCAA 429
Query 495 GGCTTATCAGCTACAGCATCGACACCAAGCTGACAGTGATCGTCAGCTTTCTTGCTAGC- 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 430 GGCTTATCAGCTACAGCATCGACACCAAGCTGACAGTGATCGTCAGCTTTCTTGCTA-CT 488
Query 554 CTTGGCCTTGATCAAGATGGGATGATTGGCAAAGTTCTGGTGAAGAACCCATTTCTTATG 613
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 489 CTTGGCCTTGACCAAGATGGGATGATCGGCAAAGTTCTGGTCAAGAACCCATTTCTTATG 548
Query 614 GGGTACAGTGTTGATAAAAGGTTACGGCCTACCACTGAATTCTTGAAATCATCCGTTGGC 673
||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 549 GGGTATAGTGTTGATAAAAGGTTAAGGCCTACCACTGAGTTCTTGAAATCATCCGTTGGT 608
Query 674 CTGAGTGAGGATGGCATTAAGTCGGTGGTCATGAATTTCCCACAACTTTTGTGCAGAGAC 733
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CTGAGTGAGGATGGCATTCAGTCGGTGGTCATGAATTTCCCACAACTTTTGTGCAGAGAC 668
Query 734 GTTAACAAGATTCTCAAACCAAATTATGATTATTTGAAGGAGTGTGGGTTTGGAGATTCC 793
|||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 669 GTTAACAAGATTCTGAAACCAAATTATGATTATTTGAGGGAGTGTGGCTTTGGAGATTCC 728
Query 794 CAGATAGCAACCATGGTCACTGGTTATCCCCAAATCTTGATTAAGAGTGTTAAGAATTCA 853
||||||||||||||||| ||||||||||||| ||| |||||||||||| |||||||||||
Sbjct 729 CAGATAGCAACCATGGTGACTGGTTATCCCCCAATTTTGATTAAGAGTATTAAGAATTCA 788
Query 854 CTACAGCCTAGGATCAGATTCCTCGTCCAGGTGATGGGAAGAGGCATGGATGAAGTGGCT 913
||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 789 CTACAACCTAGGATCAGATTCCTAGTCCAGGTGATGGGAAGAGGCTTGGATGAAGTGGCT 848
Query 914 TCTTATCCTGAATTCTTTCACCATGGATTGAAGAAGAAGGTCGAATCGAGGTTTAAACTT 973
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 849 TCTTATCCTGAATTCTTTCACCATGGATTGAAGAAGAAGGTAGAATCAAGGTTTAAACTT 908
Query 974 GTCAAAAAGAACAACATTGACTGCAGCCTTAGAGAAATGCTGGACTGTAACACAAAGAAA 1033
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 GTTAAAAAGAACAACATTGACTGCAGCCTTAGAGAAATGCTGGACTGTAACACAAAGAAA 968
Query 1034 TTCCATGAGAAGTTTGGCTTTTC 1056
|||||||||||||||||||||||
Sbjct 969 TTCCATGAGAAGTTTGGCTTTTC 991
Score = 424 bits (229), Expect = 1e-117
Identities = 336/381 (88%), Gaps = 33/381 (9%)
Strand=Plus/Plus
Query 1105 AACAGAATATGCAGCAATGCAGTCTAGCTGCTTGTCGGAAGTATGGGTGGGTAAAAAGCC 1164
|||||||||||||||||||||||||||| |||||| |||||| || |||||||||||
Sbjct 1070 AACAGAATATGCAGCAATGCAGTCTAGCAGCTTGT--TAAGTATAGGAGGGTAAAAAGCA 1127
Query 1165 CCTAGTCATTCCACAAATATGGAGGCCCCTAGTCAAAGGTCACATTTGATGACAAAGAGA 1224
|||||||||||||||||||| | | | ||| ||||||||||||||| ||||||
Sbjct 1128 CCTAGTCATTCCACAAATAT----G--TC-A---AAAAGTCACATTTGATGAC-AAGAGA 1176
Query 1225 TGGTTGATCGTTCTCTGCCTAT-A-TAGTATGTACCTGTCATATAAAAATGAAACCCCCT 1282
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 1177 TGGTTGATCGTTCTCTGCCTCTAAGTAGTATGTACCTGTCATATAAAAATGAAACCCCCT 1236
Query 1283 CTGCTCTCTCTTTTGGATGAGATCAACCGTATTTTAAACCGGCCAAACTTGAAAGttttt 1342
||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1237 CTGCTCTCT-TT--GGATGAGATCAACCGTATTTTAAACCGGCCAAACTTGAAA-TTTTG 1292
Query 1343 ttttGCTTCAAATGCTCTTTCAAGTAGAGTCCCTTTTGTTATTCACGTTTTGTAGCTATT 1402
||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct 1293 TTT-GCTTCAAATGCTCTTTCAAGTAGAGTCCCTTT-GTTATTCACGTTT-GTAACTATT 1349
Query 1403 CTATTCT--CTCTCCTTGGAC---TG-GTGT----TTTT-GTTCTTCGGTTTTTCCGATC 1451
||||||| |||||||||||| || |||| |||| ||| |||||||||||||||
Sbjct 1350 CTATTCTTTCTCTCCTTGGACGGGTGTGTGTAAGGTTTTTGTTATTCGGTTTTTCCGATG 1409
Query 1452 AAAGTTGAATCAAGAAGAAGT 1472
|||||||||||||||||||||
Sbjct 1410 AAAGTTGAATCAAGAAGAAGT 1430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55307035740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5