BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38210.1
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490580 jgi|Araly1|490580|fgenesh2_kg.7__13__AT4G38210.1 1751 0.0
> Ahg490580 jgi|Araly1|490580|fgenesh2_kg.7__13__AT4G38210.1
Length=1104
Score = 1751 bits (948), Expect = 0.0
Identities = 1061/1114 (95%), Gaps = 14/1114 (1%)
Strand=Plus/Plus
Query 1 AAAACATGTCAGAGCAATCTTTTGTCGCATCCCCACAAGTCTTGAAAAGCGGAGCCTGAT 60
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AAAAAATGTCAGAGCAATCTTTTGTCGCATCCCCACCAGTCTTGAAAAGCGGAGCCTGAT 60
Query 61 GATCAAAAGGAACCCCCAAAACTCTCTCAAACGCATCACTTTTGTCTGCCACCTGTGACT 120
|||| ||||||||||||||||| ||||||||||| |||||||||||||||| | || |
Sbjct 61 GATCCAAAGGAACCCCCAAAACCCTCTCAAACGCGTCACTTTTGTCTGCCAGC--TG--T 116
Query 121 GACTGTGAGGATCCCAACAACACTTCTTGTTCATGGATTCTGGGCTTCAGCAACTCGCAT 180
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 117 GACTGTGAGGATCCCAACATCATTTCTTGTTCATGGATTCTGGGCTTCAGCAACTCGCAT 176
Query 181 TGTGCCTCTTCTTCATTCTCTGCCGCCTCTTTCAAGCCACTGCCGAAGATGACTGGAAGA 240
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 177 TGTGCCTCTTCTTCATTCTCTGCCGCCTCTTTCAAGCCACTGCAGAGGATGACTGGAAGA 236
Query 241 TAGCCACAGCCACGCTTTCTAGAGACAGAGACGGCTCCTCCTCCGTCGCTACTGGAGGCG 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 237 TAGCCACAGCCACGCTTTCTAGAGACAGGGACGGCTCCTCCTCCGTCGCTACTGGAGGCG 296
Query 301 CTTGTGGGTATGGAGATCTGAGGCAGAGCAGCTTTGCCGGCTACAGCGCAGGCCTGAGCG 360
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 297 CTTGTGGGTATGGAGATCTGAGGCAGAGCAGCTTTGGCGGGTACAGCGCAGGCCTGAGCG 356
Query 361 GGAAGCTGTTCAACAGGGGAAGCAGCTGCGGAGCTTGTCTAGAAGTGCGGTGCGTGAACC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GGAAGCTGTTCAACAGGGGAAGCAGCTGCGGAGCTTGTCTAGAAGTGCGGTGCGTGAACC 416
Query 421 ACATCCGTTGGTGTCTTCAAGGCAGCCCCTCCGTGGTGGTCACCGCCACCGATTTCTGTC 480
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ACATCCGGTGGTGCCTTCAAGGCAGCCCCTCCGTGGTGGTCACCGCCACCGATTTCTGTC 476
Query 481 CTCCCAATTCGGGACTCTCCTCCGATTACGGAGGTTGGTGCAACTTCCCAAAGGAACACT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 477 CTCCCAATTCGGGACTCTCCTCCGATTACGGAGGTTGGTGCAACTTCCCAAAGGAGCACT 536
Query 541 TGGAACTATCTCATGCCGCCTTCACAGGGATCGCAGAAACCAGAGCTGAGATGATACCTA 600
||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 537 TGGAACTATCTCATGCCGCTTTCACAGGGATCGCAGAAACAAGAGCCGAGATGATACCTG 596
Query 601 TACAGTATAGGAGGGTCAAGTGTGGGCGGAGAGGCGGGTTGAGATTCAGCTTGAGCGGGA 660
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TACAGTACAGGAGGGTCAAGTGTGGGCGGAGAGGCGGGTTGAGATTCAGCTTGAGCGGGA 656
Query 661 GCTCCCACTTTTTCCAGGTGTTGATAAGCAATGTGGGCCTCGACGGGGAAGTGGTTGGTG 720
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 657 GCTCCCACTTCTTCCAGGTGTTGATAAGCAATGTGGGCCTCGACGGGGAAGTGGTTGGAG 716
Query 721 TGAAAGTGAAGGGCCACACAACGGCTTGGATCCCAATGGCCAGAAACTGGGGACAGAACT 780
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 717 TGAAAGTGAAGGGCCATACAACGGCTTGGATCCCAATGGCCAGAAACTGGGGACAGAATT 776
Query 781 GGCACTCCTCTCTCGATCTCATCGGACAGTCTCTCTCTTTCGAGGTTACTCTCAAAGGCG 840
||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 777 GGCACTCCTCTCTTGACCTCATTGGACAGTCTCTCTCTTTCGAGGTTTCTCTCAAAGGCG 836
Query 841 GCAAAACCATTGCCTCTTATGATGTGGCTCCTCCGTATTGGCGCTTCGGAATGACATACC 900
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 837 GCAAAACCATTGCCTCTTATGATGTGGCTCCTCCATATTGGCGCTTCGGAATGACATACC 896
Query 901 AAGGAAAGCAGTTCCACTCCTGACTCCT--TT-ATCTTCTTCAAATCATGATTCACTTTC 957
|||||||||||||||||||||||||||| || ||| ||||||| |||||||||||||||
Sbjct 897 AAGGAAAGCAGTTCCACTCCTGACTCCTCCTTTATCGTCTTCAAGTCATGATTCACTTTC 956
Query 958 GGTGACTTTATTATGACTTTGGAGTCATTAGATATCATCACTTCATTTCAAGGAGGTATA 1017
|||| ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct 957 GGTGGCTTTATTATGACTTTGGAGACATTAGATATCATCACTTCGTTTCAAGG---TATA 1013
Query 1018 AATGACTTTCCACGAGTGGCTCAtctttgtcttctcttttcttttttctttttATATAAT 1077
||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||
Sbjct 1014 AATGACTTTCCACGAGTGGCTCATCTT-GTCTTCTCTTTTAGTTTT-CTTTTTATATAAT 1071
Query 1078 -ATATCCTTCACAATCCTTACTTGGACCGCATTT 1110
| ||||||||||||||| ||||||||| |||||
Sbjct 1072 CA-ATCCTTCACAATCCTCACTTGGACCTCATTT 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42583298289
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5