BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38220.2
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327784 jgi|Araly1|327784|fgenesh1_pm.C_scaffold_7000011 1908 0.0
Ahg355773 jgi|Araly1|355773|fgenesh1_pg.C_scaffold_7002946 134 3e-30
> Ahg327784 jgi|Araly1|327784|fgenesh1_pm.C_scaffold_7000011
Length=2217
Score = 1908 bits (1033), Expect = 0.0
Identities = 1170/1234 (95%), Gaps = 18/1234 (1%)
Strand=Plus/Plus
Query 76 GTCTTCTTCGTCTTCTCCTCGTTGTTGTT--GTTCTTCAT-CTTTCTGCGGTGGCCGGCG 132
||||||||| ||||||| |||||||| || | | | | | |||||||||||||||||||
Sbjct 11 GTCTTCTTCTTCTTCTCGTCGTTGTTCTTCAGCTATGCCTCCTTTCTGCGGTGGCCGGCG 70
Query 133 ACGACGCCATCGTCTCCAGATTCCAGGAGTACCTCCGAATCAACACGGTTCAGCCCAACC 192
||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 71 ACGACGCAATCATCTCCAGATTCCAGGAGTATCTCCGAATCAACACGGTCCAGCCCAACC 130
Query 193 CGGAATACTACAAAGCCGTTGACTTTATAATA-TCTCAGGCGAAACCACTGTCCCTCGAA 251
|||| ||||||||||||||||||||||||| | |||||||| |||||||| |||||||||
Sbjct 131 CGGATTACTACAAAGCCGTTGACTTTATAA-ACTCTCAGGCAAAACCACTCTCCCTCGAA 189
Query 252 TCTCAGACGATCGAATTTGTAAAAGGAAAGCCGCTTCTCCTCCTCAAATGGGTTGGCTCC 311
|||||||||||||| | || || |||||||| |||||||||||||||||||||||||||
Sbjct 190 TCTCAGACGATCGAGCTCGTCAAGGGAAAGCCCCTTCTCCTCCTCAAATGGGTTGGCTCC 249
Query 312 GACCCAACCCTACCTGCCTTTCTCCTCAACTCCCACACCGATGTCGTTCCCTTCGAGGAC 371
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 250 GACCCAACCCTACCTGCCTTTCTCCTCAACTCCCACACCGATGTCGTTCCGTTTGAGGAC 309
Query 372 TCCAAGTGGACTCACCATCCGCTCCAAGCTCACATGGACCACCATGGCGACATCTATGCC 431
|||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||
Sbjct 310 TCCAAGTGGACTCACCATCCTCTCCAAGCTCACATCGACCACCACGGCCTCATCTATGCC 369
Query 432 AGGGGTTCCCAGGACATGAAGTGCGTCGGGATGCAGTACCTCGAGGCCATACGCAAGCTC 491
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 370 AGGGGTTCCCAGGACATGAAGTGCGTCGGGTTGCAGTACCTCGAGGCCATACGCAAGCTC 429
Query 492 CAGGCTT-CTGGCTTCAAGCCACTCCGATCCGTCTATCTCTCCTTCGTCCCCGATGAAGA 550
||||||| | || ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 430 CAGGCTTCCGGGTTTC-AGCCTCTCCGATCCGTCTATCTCTCCTTCGTCCCCGATGAAGA 488
Query 551 GATTGGCGGCCACGATGGCGCAGAGAAGTTTGCT-GAATCCCAATTATTCAAGAGCTTGA 609
||| ||||||||||||||||| |||||||| | | ||||||||||| |||||||||||||
Sbjct 489 GATCGGCGGCCACGATGGCGCCGAGAAGTTCG-TCGAATCCCAATTCTTCAAGAGCTTGA 547
Query 610 ACATCGCAATCGTGCTCGACGAAGGCCTGCCATCGCCTACTGAGAGTTACAGAGTATTCT 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 ACATCGCAATCGTGCTCGACGAAGGCCTGCCATCGCCTACTGAGAGTTACAGAGTATTCT 607
Query 670 ATGGAGAGAGGAGTCCCTGGTGGCTGGTGATTAAGGCTAAAGGTCCACCTGGCCACGGTG 729
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 ACGGAGAGAGGAGTCCCTGGTGGCTGGTGATTAAGGCTAAAGGTCCACCTGGCCACGGTG 667
Query 730 CCAAGCTCTATGACAACTCTGCCATGGAGAATCTGCTCAAAAGCATTGAGAGTATTCGCA 789
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 CCAAGCTCTATGATAACTCTGCCATGGAGAATCTGCTCAAAAGCATTGAGAGTATTCGCA 727
Query 790 GATTCAGAGCTTCTCAGTTCGATCTTCTCAAAGCTGGTGGGATAGCTGAAGGCGATGTTG 849
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 728 GATTCAGAGCTTCTCAGTTCGATCTGCTCAAAGCTGGTGGGATAGGTGAAGGCGATGTTG 787
Query 850 TCTCTGTGAACATGGCCTTCCTCAAGGCTGGCACACCTTCTCCAACTGGTTTCGTAATGA 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TCTCTGTGAACATGGCCTTCCTCAAGGCTGGCACACCTTCTCCAACTGGTTTCGTAATGA 847
Query 910 ATCTGCAACCATCTGAGGCAGAAGCTGGTTTCGACATTCGTGTTCCACCCAGCGTTGATG 969
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 848 ATCTGCAACCATCTGAGGCAGAAGCTGGTTTCGACATTCGTGTTCCACCCAACGTTGATG 907
Query 970 CTGAAGCACTCGAAAGACGTTTAGTGGAGGAATGGGCTCCAGCAGCACGAAACATGTCCT 1029
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 908 CTGAAGCACTCGAAAGACGTTTGGTGGAGGAATGGGCTCCAGCAGCACGAAACATGTCCT 967
Query 1030 TTGAGCTGGGGCAGTTCAAGCAGAAGCTTACGGGGAAGCAATTCCTTACAGCAGCAGATG 1089
||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TTGAG-T-------T-CAAGCAGAAGCTTACGGGGAAGCAATTCCTTACAGCAGCAGATG 1018
Query 1090 ATTCAAATCCTTGGTGGGGGCTCTTGGAAAATGCTGTTAAGGAAGCCGGAGGTAGGACCA 1149
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATTCAAATCCTTGGTGGGGGCTCTTGGAAAATGCTGTTAAGGAAGCCGGAGGTAGGACCG 1078
Query 1150 GTAAGCCTGAGATTTTCCCTGCATCAACGGATGCTCGCTACTTTCGCAAGGCTGGCGTGC 1209
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1079 GTAAGCCTGAGATTTTCCCTGCATCAACTGATGCTCGCTACTTCCGCAAGGCTGGCGTGC 1138
Query 1210 CTGCCTTTGGGTTCTCTCCCATATCAAACACCCCGAGTCTGCTTCATGACCACAATGAGT 1269
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1139 CTGCCTTTGGGTTCTCTCCCATATCAAACACCCCGAGTTTGCTTCATGACCACAATGAGT 1198
Query 1270 ATTTGGGTAAAGCTGAGTACTTGAAAGGCATTGA 1303
||||||||||||||||||||||||| ||||||||
Sbjct 1199 ATTTGGGTAAAGCTGAGTACTTGAAGGGCATTGA 1232
> Ahg355773 jgi|Araly1|355773|fgenesh1_pg.C_scaffold_7002946
Length=1704
Score = 134 bits (72), Expect = 3e-30
Identities = 113/133 (85%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 1072 TCCTTACAGCAGCAGATGATTCAAATCC-TTGGTGGGGGCTCTTGGAAAATGCTGTTAAG 1130
|||||||||||||||||||||||||||| || ||| || |||||||||| ||||| |||
Sbjct 32 TCCTTACAGCAGCAGATGATTCAAATCCGTTT-TGGAGGATCTTGGAAAAGGCTGTGAAG 90
Query 1131 GAAGCCGGAGGTAGGACCAGTAAGCCTGAGATTTTCCCTGCATCAACGGATGCTCGCTAC 1190
|| || ||| || ||| |||||||||||||| |||||||||||||| || ||||| |||
Sbjct 91 GACGCTAGAGATAAGACTAGTAAGCCTGAGATATTCCCTGCATCAACAGACGCTCGTTAC 150
Query 1191 TTTCGCAAGGCTG 1203
||| | || ||||
Sbjct 151 TTTTGGAAAGCTG 163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58087623625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5