BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38225.3
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327784 jgi|Araly1|327784|fgenesh1_pm.C_scaffold_7000011 1495 0.0
Ahg355774 jgi|Araly1|355774|fgenesh1_pg.C_scaffold_7002947 327 9e-89
> Ahg327784 jgi|Araly1|327784|fgenesh1_pm.C_scaffold_7000011
Length=2217
Score = 1495 bits (809), Expect = 0.0
Identities = 927/979 (95%), Gaps = 27/979 (3%)
Strand=Plus/Plus
Query 164 AACCACAATTTCTCCTCTTTCGTGTTCAGCTGAAAGTTCCTCGGAGATTGCCCTGGCGCA 223
||||||||| || |||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1236 AACCACAATATCCCCTCTTTCTTGTTCAGCTGAAATTTCCTCGGAGATTGCCCTGGCGCA 1295
Query 224 GAGCCAGCCTGCCCCTGATTTCAATCCCTGGTCGGAGTTCGCTCAAAATGTGTCTGGCGA 283
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1296 GAGCCAGCCTGCCCCTGATTTCAATCCCTGGTCGGAGTTCGCTCATAATGTGTCTGGCGA 1355
Query 284 ATGGGACGGTTTCGGAGCAGATTTTACATGCGAAGGGCAACCGCTAGAACTACCTGAATC 343
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1356 ATGGGACGGTTTCGGAGCAGATTTTACATGCGAAGGGCAACCGCTTGAACTACCTGAATC 1415
Query 344 AGTGGTTCCAGAAGCCTTTAGAGAATGGGAAGTGAAGGTGTTCGATTGGCAGACGCAGTG 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 AGTGGTTCCAGAAGCCTTTAGAGAATGGGAAGTGAAGGTGTTCGATTGGCAGACGCAGTG 1475
Query 404 TCCCACTCTTGCCCAGCCCAACTCACTATCCTTTCTTTACAAGTCCATCAAACTCCTCCC 463
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1476 TCCCACTCTTGCCCAGCCCCACTCACTCTCCTTTCTTTACAAGTCCATCAAACTCCTCCC 1535
Query 464 CACCGTTGGATGTGAAGCTGATGCAGCCACCCGTTACAGCATCGACCAGAGGATCATCGG 523
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1536 CACCGTTGGATGTGAAGCTGATGCAGCCACCCGTTACAGCATCGACCATAGGATCATCGG 1595
Query 524 GGGAGGCAAATCCTCTGCATTAGCCTTTTCGTATTCTGTCACTGGCTCCTATGTCGCTGT 583
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 GGGAAGCAAATCCTCTGCATTAGCCTTTTCGTATTCTGTCACTGGCTCCTATGTCGCTGT 1655
Query 584 GTGGCCTTTGCGGAACAACCAGCTTGAGGTGGAGCATTGTCTGATCAATCCAAAGGACAA 643
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1656 GTGGCCTTTGCGGAACAACCAGCTTGAGGTGGAGCATTGCCTGATCAATCCAAATGACAA 1715
Query 644 GGAGTCTCGTGTGAGGATTTTCCAGGTTGTCAGCTTAGCAGAGACCACCAACATGTCCTT 703
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1716 GGAGTCTCGTGTGAGGATTTTCCAGGTTGTCAGCTTAGCAGAGACCA--A-CATGTCCTT 1772
Query 704 GCAGAGTGTCAAAGTTTTCTGTGAGCAGTGGTACGGTCCGTTCAGAGATGGCGATCAGCT 763
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1773 GCAGAGTGTCAAAGTTTTCTGTGAGCAGTGGTACGGTCCTTTCAGAGACGGCGATCAGCT 1832
Query 764 TGGAGGCTGTGCCATCCGTAGCTCCGGCTTTGCTGCTACACCTACCACTGCAGCTTCAGT 823
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1833 CGGAGGTTGTGCCATCCGTAGCTCCGGCTTTGCTTCTACACCTACCACTGCAGCTTCAGT 1892
Query 824 GGTTACCGGTTCTTGGAGAGTTCTACTTGCTACCACTAGCTTTCACGCCTCTGATTTCG- 882
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1893 GGTTACCGGTTCTTGGAGAGTTCTACTTGCTACCACTAGCTTTCACGCCTCTGATTTCGT 1952
Query 883 G--TTG---T--------A--T------A--CAACAAGTTACTGGCGAGAAGGTGATTGA 919
| ||| | | | | ||||||||||| |||||||||||||||||
Sbjct 1953 GAGTTGGCCTCCTTTTTTAAGTGGTTGTATTCAACAAGTTACAGGCGAGAAGGTGATTGA 2012
Query 920 GATTGTGAGAGAAGAAAATGATCTTTTATTGCTTCCGCAAGAGCTGTGGTGCTCACTCCA 979
|||| ||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||
Sbjct 2013 GATTTTGAGAGAAGAAAAGGATATTTTATTGCTTCCGCAAGAGATGTGGTGCTCACTCCA 2072
Query 980 ACAAGGCAAAGACCGCGAAAGAGTATTTTCAGTAGGATGGGTCTTTGAGCCAGGCCATGC 1039
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2073 AGAAGGCAAAGACCGCGAAAGAGTATTTTCAGTAGGATGGGTGTTTGAGCCAGGCCATGC 2132
Query 1040 TATCACATCCAGCTGCGTCTTCTCTAGCGATTCTAAGCTAAAGGAGGTAACAATGGGGAG 1099
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2133 TATCACATCCAGCTGCGTCTTCTCTAGCGATTCTAAGCTAAAGGAGGTAACAGTGGGGAG 2192
Query 1100 AGAGACTGCTCTATCAGAT 1118
|||||||||||||||||||
Sbjct 2193 AGAGACTGCTCTATCAGAT 2211
> Ahg355774 jgi|Araly1|355774|fgenesh1_pg.C_scaffold_7002947
Length=684
Score = 327 bits (177), Expect = 9e-89
Identities = 329/398 (83%), Gaps = 27/398 (7%)
Strand=Plus/Plus
Query 33 ATGTTATCGTCCTCCGGAAGCTCCCTCTTATGGCGGAGCCGTACACATGTGCCTGCACCG 92
||||||| ||| |||||| ||||||||||||| ||| |||||||| || |||
Sbjct 16 ATGTTATATTCCGCCGGAAACTCCCTCTTATGGAGGAACCGTACAC-----CC-ATACCA 69
Query 93 CCGCCTCGGTCTTCGCCACCGCTT-AAAGCTCTC-TCCTTTCCCTTCTCTTCCAGTTTAT 150
||| |||| || |||| | || ||| ||||| | || |||||||||||||| ||||
Sbjct 70 CCGTCTCGACCTCCGCCTTC-TTTCAAATCTCTCGT-CTCTCCCTTCTCTTCCATTTTA- 126
Query 151 G-GTTTAT--T-CACAGAACCACAATTTCTCCTCTTTCGTGTTCAGCTGAAAGT-TCCTC 205
| |||||| | ||||||||| |||||| ||| |||| || |||||||||| | |||||
Sbjct 127 GTGTTTATGATGAACAGAACCAGAATTTCCCCTATTTCTTGCTCAGCTGAAA-TCTCCTC 185
Query 206 GGA-GATTGCCCTGGCGCAGAGCCAGCCTGCCCCTGATTTCAATCCCTGGTCGGAGTTCG 264
| | | ||||||| ||||||||||||||| || |||||| |||||||| ||| || ||||
Sbjct 186 GAATG-TTGCCCTCGCGCAGAGCCAGCCTTCCTCTGATTACAATCCCTTGTCTGATTTCG 244
Query 265 CTCAAAATGTGTCTGGCGAATGGGACGGTTTCGGAGCAGATTTTACATGCGAAGGGCAAC 324
|||||||||| ||||||||||||||||||||||||||||||||| || | |||||| |||
Sbjct 245 CTCAAAATGTTTCTGGCGAATGGGACGGTTTCGGAGCAGATTTTTCACGGGAAGGGAAAC 304
Query 325 CGCTAGAACTACCTGAATCAGTGGTTCCAGAAGCCTT-TAGAGAATGGGAAGTGAAGGTG 383
|| | |||||| | |||||||||||||||| || ||||||||||||||||||||||
Sbjct 305 CGATTGAACTA--T----CAGTGGTTCCAGAAGC-TTATAGAGAATGGGAAGTGAAGGTG 357
Query 384 TTCGATTGGCAGACGCAGTGTCCCACTCTTGCCCAGCC 421
||||||||||| |||||||||||||||||||| |||||
Sbjct 358 TTCGATTGGCAAACGCAGTGTCCCACTCTTGCTCAGCC 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5