BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38230.2
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888029 jgi|Araly1|888029|Al_scaffold_0007_15 2521 0.0
Ahg491116 jgi|Araly1|491116|fgenesh2_kg.7__549__AT4G35310.1 536 2e-151
> Ahg888029 jgi|Araly1|888029|Al_scaffold_0007_15
Length=1455
Score = 2521 bits (1365), Expect = 0.0
Identities = 1425/1455 (98%), Gaps = 0/1455 (0%)
Strand=Plus/Plus
Query 270 ATGAAGCACAGCGGTGGGAACCAAGCCTGCTATGTTCTTGGTCAAAAGACCCCAAGCATC 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGCACAGCGGTGGGAACCAAGCCTGCTATGTTCTTGGTCAAAAGACCCCAAGCATC 60
Query 330 CGAGATCTCTACTCGTTGGGACACAAACTAGGTCAAGGACAGTTTGGGACGACTTACATG 389
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CGAGATCTCTACTCGTTGGGACAAAAACTAGGTCAAGGACAGTTTGGGACGACTTACATG 120
Query 390 TGCAAAGAGATCTCAACAGGGCGTGAATACGCATGCAAGTCTATAACAAAACGAAAGTTG 449
|||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 121 TGCAGAGAGATCTCAACAGGGCGTGAATACGCGTGCAAATCTATAACAAAACGAAAGTTG 180
Query 450 ATATCAAAGGAAGATGTGGAAGACGTACGCAGGGAAATTCAAATCATGCACCATCTGGCT 509
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 ATATCAAAGGAAGATGTGGAAGACGTGCGCAGGGAAATTCAAATCATGCACCATCTGGCT 240
Query 510 GGCTACAAGAACATTGTCACCATTAAAGGTGCTTACGAGGATCCATTGTATGTTCACATC 569
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTTACAAGAACATTGTCACCATTAAAGGTGCTTACGAGGATCCATTGTATGTTCACATC 300
Query 570 GTGATGGAGCTTTGCTCAGGTGGGGAATTGTTTGACAGAATTATCCAGAGAGGACATTAC 629
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 GTGATGGAGCTTTGCTCAGGTGGGGAACTGTTTGACAGAATTATCCAGAGAGGACATTAC 360
Query 630 AGCGAGAGAAAAGCAGCTGAGCTGATAAAGATCATCGTTGGTGTTGTTGAGGCTTGCCAT 689
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 AGTGAGAGAAAAGCAGCTGAGCTGATAAAGATCATTGTTGGTGTTGTTGAGGCTTGCCAT 420
Query 690 TCGCTTGGTGTCATGCATAGAGATCTAAAGCCCGAAAATTTCTTGTTGGTTAACAAGGAC 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCGCTTGGTGTCATGCATAGAGATCTAAAGCCCGAAAATTTCTTGTTGGTTAACAAGGAC 480
Query 750 GACGACTTCTCTCTCAAAGCCATTGATTTTGGGCTTTCCGTGTTCTTCAAACCAGGTCAA 809
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATGACTTCTCTCTCAAAGCCATTGATTTTGGGCTTTCCGTGTTCTTCAAACCAGGTCAA 540
Query 810 ATATTCGAGGATGTGGTTGGAAGTCCGTATTATGTTGCTCCTGAGGTTCTGCTCAAGCAC 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATATTCGAGGATGTGGTTGGAAGTCCGTATTATGTTGCTCCTGAGGTTCTGCTCAAGCAC 600
Query 870 TACGGACCCGAGGCTGATGTGTGGACCGCAGGGGTCATACTGTACATATTGGTGAGCGGA 929
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 TACGGACCAGAGGCTGATGTGTGGACAGCAGGGGTCATACTGTACATATTGGTGAGCGGA 660
Query 930 GTCCCTCCGTTCTGGGCAGAAACACAGCAAGGGATATTTGATGCAGTGCTGAAGGGACAT 989
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 661 GTCCCTCCGTTCTGGGCAGAAACACAGCAAGGGATATTTGATGCCGTGCTGAAGGGGCAT 720
Query 990 ATTGACTTTGACTCCGACCCTTGGCCCCTAATATCCGACTCTGCAAAAAACTTGATCCGT 1049
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 721 ATTGACTTTGACTCCGACCCTTGGCCCCTAATATCTGACTCTGCAAAAGACTTGATCCGT 780
Query 1050 GGCATGCTATGTTCCCGGCCCTCTGAGCGACTGACAGCTCATCAAGTATTGCGCCATCCT 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGCATGCTATGTTCCCGGCCCTCTGAGCGACTGACAGCTCATCAAGTATTGCGCCATCCT 840
Query 1110 TGGATCTGTGAAAATGGAGTTGCGCCAGACAGAGCACTAGATCCTGCTGTGCTTTCTCGT 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGGATCTGTGAAAATGGAGTTGCGCCAGACAGAGCACTAGATCCTGCTGTGCTTTCTCGT 900
Query 1170 CTTAAACAGTTCTCTGCGATGAATAAACTAAAGCAGATGGCTTTACGGGTAATAGCTGAG 1229
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 901 CTTAAGCAGTTCTCTGCGATGAATAAACTAAAGCAGATGGCTTTAAGGGTAATAGCTGAG 960
Query 1230 AGTCTCTCGGAGGAAGAAATTGCTGGACTGAAGGAAATGTTCAAAGCAATGGACACGGAT 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGTCTCTCGGAGGAAGAAATTGCTGGACTGAAGGAAATGTTCAAAGCAATGGACACGGAT 1020
Query 1290 AACAGTGGAGCGATTACGTTTGACGAGCTGAAAGCCGGGTTGCGAAGATATGGTTCAACC 1349
||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 1021 AACAGTGGAGCGATTACATTTGACGAGCTAAAAGCTGGGTTGCGAAGATATGGTTCTACC 1080
Query 1350 CTCAAGGATACTGAGATTCGTGACCTTATGGAGGCTGCAGATATTGACAAGAGTGGGACC 1409
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTGAAGGATACTGAGATTCGTGACCTTATGGAGGCTGCAGATATTGACAAGAGTGGGACC 1140
Query 1410 ATAGATTATGGTGAATTCATTGCTGCAACAATCCATCTGAACAAATTAGAGCGTGAAGAA 1469
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1141 ATAGATTATGGTGAATTCATTGCTGCAACAATCCATCTGAACAAATTAGAGCGTGAGGAA 1200
Query 1470 CATCTTCTGTCAGCCTTCAGGTACTTTGACAAAGATGGGAGCGGTTACATCACTATCGAT 1529
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1201 CATCTTCTGTCAGCCTTCAGGTACTTTGACAAAGATGGCAGCGGTTACATCACTATCGAC 1260
Query 1530 GAGCTACAGCACGCATGTGCTGAACAGGGAATGAGTGATGTCTTTCTAGAAGATGTGATC 1589
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1261 GAGCTACAGCACGCATGTGCTGAACAGGGAATAAGTGATGTCTTTCTAGAAGATGTGATC 1320
Query 1590 AAGGAAGTCGACCAAGACAATGATGGAAGGATTGACTACGGGGAGTTTGTAGCTATGATG 1649
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1321 AAGGAAGTCGACCAAGACAATGATGGAAGGATTGACTACGGAGAGTTTGTAGCTATGATG 1380
Query 1650 CAGAAAGGCATTGTTGGAAGAACAATGAGGAAAAGCATAAACATGAGCATCAGGAACAAT 1709
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1381 CAGAAAGGCATTGTTGGAAGAACAATGAGGAAAAGTATAAACATGAGCCTCAGGAACAAT 1440
Query 1710 GCCGTCTCGCAGTGA 1724
|||||||||||||||
Sbjct 1441 GCCGTCTCGCAGTGA 1455
> Ahg491116 jgi|Araly1|491116|fgenesh2_kg.7__549__AT4G35310.1
Length=2046
Score = 536 bits (290), Expect = 2e-151
Identities = 566/697 (81%), Gaps = 28/697 (4%)
Strand=Plus/Plus
Query 291 CAAGCCTGCTATGTTCTTGGTCAAAAGACCCCAAGCATCCGAGA--TCTCTACTCGTTGG 348
||||| | ||||||||||||||| ||||| |||| ||| || || ||| ||| | ||
Sbjct 348 CAAGCTTACTATGTTCTTGGTCATAAGACACCAAACATTCGTGATTTCTATAC-CCTT-A 405
Query 349 GACACAAACTAGGTCAAGGACAGTTTGGGACGACTTA-CATGTGCAAAGAGATCT-CAAC 406
| | || ||||| ||||| || ||||| |||||||| | | || | |||||| | | |
Sbjct 406 GCCGTAAGCTAGGACAAGGTCAATTTGGAACGACTTATC-TATGTACAGAGAT-TGCCTC 463
Query 407 AGGGCG-TGAATACGCATGCAAGTCTATA-ACAAAACGAAAGTTGATATC-AAAGGAAGA 463
|||| ||| ||||| || ||||| ||| ||| | | |||||||| || ||| |||||
Sbjct 464 -TGGCGTTGACTACGCTTGTAAGTCAATATCCAAGA-GGAAGTTGATCTCTAAA-GAAGA 520
Query 464 TGTGGAAGACG-TACGCAGGGAAATTCAAATCATGCACCATCTGGCTGGCTACAAG-AAC 521
||| || || | || | ||||| ||||| || ||||| ||| |||||||| || | |||
Sbjct 521 TGTTGAGGATGTTA-GAAGGGAGATTCAGATAATGCATCATTTGGCTGGCCAC-GGAAAC 578
Query 522 ATTGTCACCATTAAAGGTGCTTACGAGGATC-CATTGTATGTTCACATCGTGATGGAGCT 580
|| || || |||||||| ||||| ||||| | | |||||||||||||| || ||||||||
Sbjct 579 ATCGTGACGATTAAAGGAGCTTATGAGGA-CTCTTTGTATGTTCACATTGTTATGGAGCT 637
Query 581 TTGCT-CAGGTGGGGAATTGTTTGACAGAATTATCCAGAGAGGACATTACAGCGAGAGAA 639
||| | | || || ||||||||||| || ||||| |||||||||||||| || ||||| |
Sbjct 638 TTG-TGCTGGAGGTGAATTGTTTGATAGGATTATTCAGAGAGGACATTATAGTGAGAGGA 696
Query 640 AAGCAGCTGAGCTGA-TAAAGATCATCGTTGGTGTTGTTGAGGCTTGCCATTCGCTTGGT 698
|||| |||||||||| | |||||||| || || |||||||| || || ||||||||||||
Sbjct 697 AAGCTGCTGAGCTGACT-AAGATCATTGTCGGGGTTGTTGAAGCGTGTCATTCGCTTGGT 755
Query 699 GTCATGCATAGAGATC-TAAAGCCCGAAAATTTCTTGTTGGTTAACAAGGACGACGACTT 757
|| ||||||||||| | | ||||| || ||||||||||||||||| ||||| || || ||
Sbjct 756 GTTATGCATAGAGA-CTTGAAGCCTGAGAATTTCTTGTTGGTTAATAAGGATGATGATTT 814
Query 758 CTCTCTCAAAGCCATTGATTTTGGGCTTTCCGTGTTCTTCAAACCAGGTCAAATATTCGA 817
||||||||| || ||||||||||| || || || || ||||||||||||||||||||| |
Sbjct 815 CTCTCTCAAGGCTATTGATTTTGGCCTATCTGTCTTTTTCAAACCAGGTCAAATATTC-A 873
Query 818 -GGATGTGGTTGGAAGTCCGTATTATGTTGCTCCTGAGGTTCTGCTCAAGCACTACGGAC 876
||||| ||||||||||| ||||||||||||||||||||| ||||||| | || || |
Sbjct 874 CTGATGTTGTTGGAAGTCCATATTATGTTGCTCCTGAGGTTTTGCTCAAACGTTATGGGC 933
Query 877 CCGAGGCTGATGTGTGGACCGCAGGGGTCATACTGTACATATTGGTGAGCGGAGTCCCTC 936
| || |||||||||||||| || || || |||||||| |||||| | || |||||||| |
Sbjct 934 CTGAAGCTGATGTGTGGACTGCTGGTGTTATACTGTATATATTGCTAAGTGGAGTCCCGC 993
Query 937 CGTTCTGGGCAGAAACACAGCAAGGGATATTTGATGC 973
| |||||||||||||||||||||||||||||||||||
Sbjct 994 CTTTCTGGGCAGAAACACAGCAAGGGATATTTGATGC 1030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68143448305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5