BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38240.1
Length=1813
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490588 jgi|Araly1|490588|fgenesh2_kg.7__21__AT4G38240.1 1352 0.0
Ahg944078 jgi|Araly1|944078|scaffold_700307.1 387 2e-106
Ahg892421 jgi|Araly1|892421|Al_scaffold_0006_417 206 6e-52
> Ahg490588 jgi|Araly1|490588|fgenesh2_kg.7__21__AT4G38240.1
Length=1672
Score = 1352 bits (732), Expect = 0.0
Identities = 813/853 (95%), Gaps = 1/853 (0%)
Strand=Plus/Plus
Query 104 GTTTGTCGTCGATATGGCGAGGATCTCGTGTGACTTGAGATTTCTTCTCATCCCGGCAGC 163
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||
Sbjct 1 GTTTGTCGTCGATATGGCGAGGATGTCTTGTGACTTGAGATTCCTTCTCATCCCGGCCGC 60
Query 164 TTTCATGTTCATCTACATCCAGATGAGGCTTTTCCAGACGCAATCACAGTATGCAGATCG 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTCATGTTCATCTACATCCAGATGAGGCTTTTCCAGACGCAATCACAGTATGCAGATCG 120
Query 224 CCTCAGTTCCGCTATCGAATCTGAGAACCATTGCACTAGTCAAATGCGAGGCCTCATAGA 283
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 121 CCTCGGTTCCGCTATCGAATCTGAGAACCATTGCACTAGTCAAATGCGTGGCCTCATTGA 180
Query 284 TGAAGTTAGCATCAAACAGTCGCGGATTGTTGCCCTCGAAGATATGAAGAACCGCCAGGA 343
||||||||||||||||||||| | ||||||||| ||| ||||| ||||||||||||||||
Sbjct 181 TGAAGTTAGCATCAAACAGTCACAGATTGTTGCTCTCCAAGATGTGAAGAACCGCCAGGA 240
Query 344 CGAAGAACTTGTGCAGCTTAAGGATCTAATCCAGACGTTTGaaaaaaaaGGAATAGCAAA 403
| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 241 CCAAGAACTTGTGCAGCTTAAGGATCTTATCCACACGTTTGAAAAAAAAGGAATTGCAAA 300
Query 404 ACTCACTCAAGGTGGACAGATGCCTGTGGCTGCTGTAGTGGTTATGGCCTGCAGTCGTGC 463
||||| | ||| |||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 301 ACTCATTGAAGCTGGACAGATGCCTGTGGCTGCTGTTGTGATTATGGCCTGCAGTCGTGC 360
Query 464 AGACTATCTTGAAAGGACTGTTAAATCAGTTTTAACATATCAAACTCCCGTTGCTTCAAA 523
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 AGACTATCTTGCAAGGACTGTTAAATCAGTTTTAACATATCAAAGTCCCGTTGCTTCAAA 420
Query 524 ATATCCTCTATTTATATCTCAGGATGGATCTGATCAAGCTGTCAAGAGCAAGTCATTGAG 583
||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |||
Sbjct 421 ATATCCTCTATTTATATCTCAGGATGGATCTAATCAAGCCGTCAAGAGCAAGGCATCGAG 480
Query 584 CTATAATCAATTAACATATATGCAGCACTTGGATTTTGAACCAGTGGTCACTGAAAGGCC 643
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 CTATAATCAACTAACATATATGCAGCACTTGGATTTTGAACCAGTGATCACTGAAAGGCC 540
Query 644 TGGCGAACTGACTGCGTACTACAAGATTGCACGTCACTACAAGTGGGCACTGGACCAGTT 703
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGGCGAACTGATTGCGTACTACAAGATTGCACGTCACTACAAGTGGGCACTGGACCAGTT 600
Query 704 GTTTTACAAACACAAATTTAGTCGAGTGATTATACTAGAAGATGATATGGAAATTGCTCC 763
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTTCTACAAACACAAATTTAGCCGAGTGATTATACTAGAAGATGATATGGAAATTGCTCC 660
Query 764 AGACTTCTTTGATTACTTTGAGGCTGCAGCTAGTCTCATGGATAGGGATAAAACCATTAT 823
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 AGACTTCTTTGATTACTTTGAGGCTGCAGCTAATCTCATGGATAGGGATAAAACCATTAT 720
Query 824 GGCTGCTTCATCATGGAATGATAATGGACAGAAGCAGTTTGTGCATGATCCCTATGCGCT 883
||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 721 GGCAGCTTCATCATGGAATGATAATGGGCAGAAGCAGTTTGTACATGATCCCTATGCACT 780
Query 884 ATACCGATCAGAtttttttCCTGGCCTTGGGTGGATGCTCAAGAGATCGACTTGGGATGA 943
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 781 TTACCGATCAGATTTTTTTCCTGGCCTTGGGTGGATGCTGAAGAGATCGACTTGGGATGA 840
Query 944 GTTATCACC-AAA 955
||||||||| |||
Sbjct 841 GTTATCACCTAAA 853
Score = 1168 bits (632), Expect = 0.0
Identities = 771/834 (92%), Gaps = 25/834 (3%)
Strand=Plus/Plus
Query 989 ACTAAAGGAAAACCATAAAGGCCGCCAATTCATTCGACCGGAAGTCTGTAGAACATACAA 1048
|||||||||||||||||||| ||||||||| |||||||| |||||||| |||||||||||
Sbjct 853 ACTAAAGGAAAACCATAAAGACCGCCAATTTATTCGACCTGAAGTCTGCAGAACATACAA 912
Query 1049 TTTTGGTGAACATGGGTCTAGTTTGGGACAGTTTTTCAGTCAGTATCTGGAACCTATAAA 1108
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 913 TTTTGGTGAACATGGGTCTAGTTTGGGGCAATTTTTCAGTCAGTATCTGGAACCTATAAA 972
Query 1109 GCTAAACGATGTGACGGTTGACTGGAAAGCAAAGGACCTGGGATACCTGACAGAGGGAAA 1168
|||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 973 GCTAAACGATGTGAAGGTTGACTGGAAAGCAAAGGACCTGGGGTACCTAACAGAGGGAAA 1032
Query 1169 CTATACCAAGTACTTTTCTGGCTTAGTGAGACAAGCACGACCAATTCAAGGTTCTGACCT 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 CTATACCAAGTACTTTTCTGGCTTAGTGAGACAAGCACGACCAATTCAAGGTTCTGACCT 1092
Query 1229 TGTCTTAAAGGCTCAAAACATAAAGGATGATGTTCGTATCCGGTATAAAGACCAAGTAGA 1288
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 1093 CGTCTTAAAGGCTCAAAACATAAAGGGTGATGTTCGTATCCAGTATAAAGACCAAGCAGA 1152
Query 1289 GTTTGAACGCATTGCAGGGGAATTTGGTATATTTGAAGAATGGAAGGATGGTGTGCCTCG 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 GTTTGAACGCATTGCAGGGGAATTTGGTATATTTGAAGAATGGAAGGATGGTGTGCCTCG 1212
Query 1349 AACAGCATATAAAGGAGTAGTGGTGTTTCGAATCCAGACAACAAGACGTGTATTCCTGGT 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 AACAGCATATAAAGGAGTAGTGGTGTTTCGAATCCAGACAACAAGACGTGTATTCCTGGT 1272
Query 1409 TGGGCCAGATTCTGTAATGCAGCTTGGAATTCGAAATTCCTGATGCAAAACATATGAAAG 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 TGGGCCAGATTCTGTAATGCAGCTTGGAATTCGAAATTCCTGATGCAAAACATATGAAAG 1332
Query 1469 GAAAAGAAGATTTTGGACCGCATGCAGCCTCCTTCTAGCAGCTGTTAGGTTGTATTGTTA 1528
||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1333 CAAAAGAATATTTTCGAGCGCATGCAGCCTCCTTCTAGCAGCTGTTAGGTTGTATTATTA 1392
Query 1529 TTTATGGATGAGTTTGTCGAGCGGTGGGGTTAACTTTAACAGCAAGGAAGCTCTGGTGAC 1588
|||| |||||||||||| ||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1393 TTTACGGATGAGTTTGTAGAGGGGTGGGGTTAACTTTAACAGAAAGGAAGCTCTGGTGAC 1452
Query 1589 CTGGCTGATTGGCTTAGAAGTTATGGGAACCCCTTGAAAGGGTCAGGGTTAAATATATTT 1648
||| || ||||||||||| ||||||||||||||| | | | || |||||||
Sbjct 1453 CTGTCTCATTGGCTTAGATGTTATGGGAACCCCT-G---G----A-----AA-TATATTT 1498
Query 1649 CAGTTGTTTTATTAGTGATTATCTTGTGGGTA--A-CTTATACGAATGCAAATCATTCTA 1705
|||| |||||| | ||||| ||||||||||| | |||||||||| |||||||||||||
Sbjct 1499 CAGTCGTTTTAAAACTGATTGTCTTGTGGGTATCATCTTATACGAAAGCAAATCATTCTA 1558
Query 1706 TGCAGTTTTTCTTCGTCCCACTTGTTTTGGCTTCTCTATTGCTAGTGTACATATCTCTTC 1765
||||||||||| || |||||||| || |||||||| ||||||||||||| ||||||||||
Sbjct 1559 TGCAGTTTTTCATCTTCCCACTTCTTATGGCTTCTTTATTGCTAGTGTATATATCTCTTC 1618
Query 1766 AAACATGT--A------CTAAATAATGCGTGTTGCTTCAAAGAAGTAACTTTTA 1811
|||||||| | ||||||||||||||||||||||||||||||| |||||
Sbjct 1619 AAACATGTGCATATGTACTAAATAATGCGTGTTGCTTCAAAGAAGTAATTTTTA 1672
> Ahg944078 jgi|Araly1|944078|scaffold_700307.1
Length=1120
Score = 387 bits (209), Expect = 2e-106
Identities = 242/258 (94%), Gaps = 2/258 (1%)
Strand=Plus/Plus
Query 419 ACAGATG-CCTGTGGCTGCTGTAGTGGTTATGGCCTGCAGTCGTGCAGACTATCTTGAAA 477
||||||| ||| |||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 689 ACAGATGCCCT-TGGCTGCTGTAGTGATTATGGCCCGCAGTCGTACAGACTATCTTGAAA 747
Query 478 GGACTGTTAAATCAGTTTTAACATATCAAACTCCCGTTGCTTCAAAATATCCTCTATTTA 537
|||| ||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||
Sbjct 748 GGACAGTTAAATCAGTTTTAACATATCAAAGTCCCGTTGCCTCAAAACATCCTCTGTTTA 807
Query 538 TATCTCAGGATGGATCTGATCAAGCTGTCAAGAGCAAGTCATTGAGCTATAATCAATTAA 597
||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| |||
Sbjct 808 TATCTCAGGATGGATCTGATCAAGCCGTCAAGAGCAAGGCATTGAGTTATAATCAACTAA 867
Query 598 CATATATGCAGCACTTGGATTTTGAACCAGTGGTCACTGAAAGGCCTGGCGAACTGACTG 657
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 868 CATATATGCAGCACTTGGATTTTGAACCAGTGATCACTGAAAGGCCTGGCGAACTGATTG 927
Query 658 CGTACTACAAGATTGCAC 675
||||||||||||||||||
Sbjct 928 CGTACTACAAGATTGCAC 945
> Ahg892421 jgi|Araly1|892421|Al_scaffold_0006_417
Length=594
Score = 206 bits (111), Expect = 6e-52
Identities = 125/132 (95%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 546 GATGGATCTGATCAAGCTGTCAAGAGCAAGTCATTGAGCTATAATCAATTAACATATATG 605
||||||||||||||||| ||||||| |||| | ||||||||||||||| |||||||||||
Sbjct 334 GATGGATCTGATCAAGCCGTCAAGATCAAGGCCTTGAGCTATAATCAACTAACATATATG 393
Query 606 CAGCACTTGGATTTTGAACCAGTGGTCACTGAAAGGCCTGGCGAACTGACTGCGTACTAC 665
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 394 CAGCACTTGGATTTTGAACCAGTGATCACTGAAAGGCCTGGCGAACTGATTGCGTACTAC 453
Query 666 AAGATTGCACGT 677
||||||||||||
Sbjct 454 AAGATTGCACGT 465
Score = 93.5 bits (50), Expect = 5e-18
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 676 GTCACTACAAGTGGGCACTGGACCAGTTGTTTTACAAACACAAATTTAGTCGAGTGATTA 735
||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| ||
Sbjct 530 GTCACTACAAGTGGGCACTGGACCAGTTGTTCTACAAACACAAATTTGGCCGAGTGACTA 589
Query 736 TA 737
||
Sbjct 590 TA 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68067267815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5