BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38250.1
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490589 jgi|Araly1|490589|fgenesh2_kg.7__22__AT4G38250.1 2446 0.0
Ahg483287 jgi|Araly1|483287|fgenesh2_kg.4__2347__AT2G42005.1 828 0.0
> Ahg490589 jgi|Araly1|490589|fgenesh2_kg.7__22__AT4G38250.1
Length=1597
Score = 2446 bits (1324), Expect = 0.0
Identities = 1458/1523 (96%), Gaps = 7/1523 (0%)
Strand=Plus/Plus
Query 117 GTCGAAAATCATCAGATGGGTTTTCAGAACGAAGCTAG------CTCCTCCTCTTATACC 170
||||||| |||||||||||||||| |||||||| |||| ||||||||||||||||
Sbjct 76 GTCGAAATTCATCAGATGGGTTTTGAGAACGAACCTAGCTCCTCCTCCTCCTCTTATACC 135
Query 171 CTTAAAATACCTCCACCGGCCAGAGAGGACTCGCCTCTTCTCGGCAAGGGACCTCCCCTC 230
||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 136 CTTAAAATACCCCCACCGGCCAGAGAGGACACGCCTCTCCTCGGCAAGGGACCTCCCCTC 195
Query 231 TCCAGCCAGTTTAAGACCTTCGCCAACGTCTTCATCGCTGTCGTCGGCGCTGGTGTTCTT 290
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 TCCAGCCAGTTCAAGACCTTCGCCAACGTCTTCATCGCTGTCGTCGGCGCTGGTGTTCTT 255
Query 291 GGTCTTCCTTACGCCTTCAAGCGAACCGGATGGCTCATGGGTGTCCTCCTCCTCGTCTCC 350
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 256 GGTCTTCCTTACGCCTTCAAGCGTACCGGATGGCTCATGGGTGTCCTCCTCCTCGTCTCC 315
Query 351 GTCTCTGTTTTGACCCATCACTGTATGATGCTTCTTGTCTATACCCGCCGCAAGCTCGAC 410
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 316 GTCTCTGTTTTGACCCATCACTGCATGATGCTTCTTGTCCATACCCGCCGCAAGCTCGAC 375
Query 411 TCTTTCAATGCTGGCATCTCCAAGATCGGCTCTTTTGGTGACCTTGGATTCGCCGTCTGC 470
||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct 376 TCTTTCAATGCTGGCCTCTCCAAGATCGGCTCTTTCGGGGACCTTGGATTCGCCGTCTGC 435
Query 471 GGCTCCTTGGGGAGGATCGTCGTTGACTTATTTATCATTCTGTCTCAAGCTGGTTTTTGT 530
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 436 GGCTCCTTCGGGAGGATCGTCGTTGACTTATTTATTATTCTCTCTCAAGCTGGTTTTTGT 495
Query 531 GTCGGATATCTTATCTTCATCGGCACTACTTTAGCTAATCTATCCGATCCTGAATCGCCC 590
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 496 GTCGGATATCTTATCTTCATCGGCACTACTTTAGCTAATCTATTCGATCCTGATTCGCCC 555
Query 591 ACCAGTCTGAGGCATCAGTTTACAAGGCTGGGTTCTGAATTCCTGGGCGTGTCTTCTAAG 650
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 ACCAGTCTCAGGCATCAGTTTACAAGGCTGGGTTCTGAATTCCTGGGCGTGTCTTCTAAG 615
Query 651 AGTCTCTACATATGGGGATGCTTTCCCTTTCAGCTCGGTTTGAATTCGATCAAGACGCTC 710
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 616 AGTCTCTACATTTGGGGATGCTTTCCCTTTCAGCTCGGTTTGAATTCGATTAAGACCCTC 675
Query 711 ACTCACTTGGCTCCTCTCAGCATCTTCGCCGATATTGTTGATCTTGGCGCTATGGCTGTG 770
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 676 ACTCACTTGGCTCCTCTCAGCATCTTCGCCGACGTTGTTGATCTTGCCGCTATGGCTGTC 735
Query 771 GTCATTGTTGAGGATTCCATGATTATACTCAAGCAAAGGCCTGACGTGGTTGCCTTTGGT 830
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GTCATTGTAGAGGATTCCATGATTATACTCAAGCAAAGGCCTGACGTGGTTGCCTTTGGT 795
Query 831 GGTATGTCCCTCTTCTTGTATGGTATGGGCGTCGCTGTCTATTCCTTCGAAGGCGTTGGA 890
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 796 GGTATGTCCCTCTTCTTGTATGGTATGGGCGTGGCTGTCTATTCCTTCGAAGGCGTTGGA 855
Query 891 ATGGTCTTGCCTCTTGAATCGGAGATGAAGGACAAGGACAAGTTTGGCAAAGTCTTGGCT 950
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 ATGGTCTTGCCTCTTGAATCGGAGATGAAGGACAAGGACAAGTTTGGCAAAGTCTTGGCA 915
Query 951 CTCGGCATGGGATTCATCTCTCTCATATACATCGCATTTGGTATCTTAGGTTACTTGGCT 1010
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 916 CTCGGCATGGGATTCATCTCTCTCATATACATCGCATTTGGTTTCCTAGGTTACTTGGCT 975
Query 1011 TTTGGTGAGGACACCATGGACATTATCACTGCTAACTTGGGGGCAGGACTTGTCAGCACT 1070
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 976 TTTGGTGAGGACACCATGGACATAATCACTGCTAACTTGGGGGCAGGACTTGTCAGCACT 1035
Query 1071 GTTGTCCAGCTTGGACTGTGCATCAACCTCTTCTTCACCTTCCCCTTGATGATGAATCCA 1130
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 GTTGTTCAGCTTGGACTGTGCATCAACCTCTTCTTCACCTTCCCCTTGATGATGAATCCA 1095
Query 1131 GTGTTTGAGATAGTGGAGAGGCGTTTCTCACGCGGGATGTACTCTGCGTGGCTCAGATGG 1190
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1096 GTGTTTGAGATAGTGGAGAGGCGTTTCTCCCGCGGGATGTACTCTGCCTGGCTCAGATGG 1155
Query 1191 GTACTCGTCTTAGCAGTGACTCTGGTGGCTCTTTTTGTGCCAAACTTTGCAGATTTTTTG 1250
|||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1156 CTACTCGTCTTGGCAGTGACTCTGGTGGCTCTCTTTGTGCCAAACTTTACAGATTTTTTG 1215
Query 1251 TCATTGGTTGGCAGCAGCACTTGCTGTGTGTTAGGCTTTGTGTTACCTGCATTGTTTCAT 1310
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1216 TCATTGGTTGGCAGCAGCACTTGCTGTGTGTTAGGGTTTGTGTTACCTGCATTGTTTCAT 1275
Query 1311 TTATTGGTGTTCAAGGAAGAGATGGGGTGGCTGCAATGGAGTTCAGACACAGCGATTGTG 1370
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1276 TTATTGGTGTTCAAGGAAGAGATGGGGTGGATGCAATGGAGTTCAGACACAGCGATTGTG 1335
Query 1371 GTACTAGGTGTGGTTCTTGCTGTGTCGGGAACTTGGAGTTCCCTGAGTGAGATCTTCTCT 1430
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 GTATTGGGTGTGGTTCTTGCTGTGTCGGGAACTTGGAGTTCCCTGAGTGAGATCTTCTCG 1395
Query 1431 GTCAAAGTGTGAGCGTCCGTGAAGTCAGAGATTGGAGAGGTTTTTCTCTCCTTGTGTGCA 1490
||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1396 GTCAAAGTGTGAGCGTCCGGGAAGTGAGAGATTGGAGAGGTTTTTCTCTACTTGTGTGCA 1455
Query 1491 ATTATGTATATGGAATTGGTTGTGGTTTTAAGAGTAACTGTGATTGTATTTGTATTTTGA 1550
||||||||||||| ||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1456 ATTATGTATATGGGATTTGTTGTGGTGTTAAGAGTAATTGTGATTGTATTTGTATTTTGA 1515
Query 1551 TGGTTTGGAATAAAAGAGATCAGCTCTGTCTTCTGTTTTGTGTTTACATGTACAACATAT 1610
||||| |||||||||||||||||||||||||||||||||||| |||||| |||| ||||
Sbjct 1516 TGGTT-GGAATAAAAGAGATCAGCTCTGTCTTCTGTTTTGTGATTACATACACAATATAT 1574
Query 1611 GTGAGAGTTTTGATTTCTCAATG 1633
| |||||||||| |||||||||
Sbjct 1575 GGGAGAGTTTTGGGTTCTCAATG 1597
> Ahg483287 jgi|Araly1|483287|fgenesh2_kg.4__2347__AT2G42005.1
Length=1303
Score = 828 bits (448), Expect = 0.0
Identities = 1000/1259 (79%), Gaps = 68/1259 (5%)
Strand=Plus/Plus
Query 188 GGCCAGAGAGGACTCGCCTCTTCTCGGCAAGGGACCTCCCCTCTCCAGCCAGTTTAAGAC 247
||| ||||| ||| | || ||||| || || |||| || | || ||| |||| |||||
Sbjct 42 GGCGAGAGAAGACACACCGCTTCTTGGTAAAGGACGACCATTGTCGAGCAAGTTCAAGAC 101
Query 248 CTTCGCCAACGTCTTCATCGCTGTCGTCGGCGCTGGTGTTCTTGGTCTTCCTTACGCCTT 307
|||||||| |||||||| ||| |||| || ||||| ||||||||||| |||||||||||
Sbjct 102 TTTCGCCAATGTCTTCATTGCTATCGTTGGTGCTGGGGTTCTTGGTCTACCTTACGCCTT 161
Query 308 CAAGCGAACCGGATGGCTCATGGGTGT-CCTCCTCCTCGTCTCCGTCTCTGTTTTGACCC 366
||| ||||||||||||||||||||| | | | | ||| | |||||| | | ||||| |
Sbjct 162 CAAACGAACCGGATGGCTCATGGGTTTGCTTAC-GCTCTTTTCCGTCGCCGCTTTGATCA 220
Query 367 ATCACTGTATGATGCTTCTTG-TCTATACCCGCCGCAAGCTCGACTCTTTCAATGCTGGC 425
| || || ||||||||||||| || ||| ||| ||||| | | | || | |
Sbjct 221 ACCATTGCATGATGCTTCTTGTTC-ATATCCGTCGCAA----G---C--T---TGGT-G- 265
Query 426 ATCTCCAAGATCGGCTCTTTTGGTGACCTTGGATTCGCCGTCTGCGG-CTCCTTGGGGAG 484
|||| || || ||||||||||| || ||||| || || || ||||| | || | |||||
Sbjct 266 -TCTCTAATATTGGCTCTTTTGGGGATCTTGGGTTTGCTGTTTGCGGCCACC-TCGGGAG 323
Query 485 GATCGTCGTTGAC-TTATTTATCATTCTGTCTCAAGCTGGTTTTTGTGTCGGATATCTTA 543
| ||||||| ||| || |||| ||||||||||| ||||| |||||||| ||||| ||||
Sbjct 324 GTTCGTCGTCGACATT-CTTATTATTCTGTCTCAGGCTGGGTTTTGTGTTGGATACCTTA 382
Query 544 TCTTCATCGGCACTACTTTAGCTAATCTATCCGATCCTGAATCGCCCACCA-GTCTGAGG 602
|||||||||| |||||||||||||||| | | | | || | || |||| | || | |
Sbjct 383 TCTTCATCGGTACTACTTTAGCTAATC--T-C--T--TTAA-C-CCAACCACGACT-ACG 432
Query 603 CATCAGTTT-ACAAGGCTG-GGTTCTGAATTCCTGGGCGTGTCTTCTAAGAGTCTCTACA 660
| | ||| | || ||| || | | || |||| |||||| |||||||||||||||
Sbjct 433 -A-C--TTTGATGAGTCTGAGG--C--ATTTAATGGGTGTGTCTCCTAAGAGTCTCTACA 484
Query 661 TATGGGGATGCTTTCCCTTTCAGCTCGGTTTGAATTCGATCAAGACGCTCACTCACTTGG 720
|||||||||||||||| |||||||| ||||||||||| || ||||| || ||||||||||
Sbjct 485 TATGGGGATGCTTTCCGTTTCAGCTGGGTTTGAATTCTATTAAGACTCTAACTCACTTGG 544
Query 721 CTCCTCTCAGCATCTTCGCCGATATTGTTGATCTT-GGCGCTATGGCTGTGGTCATTGTT 779
| ||| | ||||| ||||| ||| | |||||| || || || ||||| ||||| |||||
Sbjct 545 CCCCTTTGAGCATATTCGCTGATGTGGTTGAT-TTGGGTGCAATGGCGGTGGTGATTGTG 603
Query 780 GAGGAT-TCCATGATTATACTCAAGCAAAGGCCTGACGTGGTTGCCTTTGGTGGTATGTC 838
|||||| | | ||||| | | |||||||||| | || ||||||||||||||||||||
Sbjct 604 GAGGATAT-TAAGATTACAGTGGTGCAAAGGCCTCAAGTTGTTGCCTTTGGTGGTATGTC 662
Query 839 CCTCTTCTTGTATGGTATGGGCGTCGCTGTCTATTCCTTCGAAGGCGTTGGAATGGTCTT 898
| ||||| ||||| ||||| || || || || |||| ||||| ||||||||||| ||
Sbjct 663 TGTGTTCTTCTATGGGATGGGAGTGGCCGTTTACGCCTTTGAAGGGGTTGGAATGGTTTT 722
Query 899 GCCTCTTGAATCGGAGATGAAGGACAAGGACAAGTTTGGCAAAGTCTTGGCTCTCGGCAT 958
|||||||||||| |||| |||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 723 GCCTCTTGAATCCGAGACCAAGGACAAGGACAAGTTTGGCAAAGTGTTGGCACTCAGCAT 782
Query 959 GGGATTCATCTCTC-TCA--TATACATCGCATTTGGTATCTTAGGTTACTTGGCTTTTGG 1015
| |||||| | | ||| ||| || | |||||| | ||||| ||| ||||||||||
Sbjct 783 GCTATTCATAGC-CGTCATGTATGGAT--CTTTTGGTGTGTTAGGCTACATGGCTTTTGG 839
Query 1016 TGAGGACACCATGGACATTATCACTGCTAACTTGGGGGCAGGACTTGTCAGCACTGTTGT 1075
|| || || ||||| || ||||| |||||||||||||||||| | || |||| | ||||
Sbjct 840 GGATGAAACGATGGATATAATCACAGCTAACTTGGGGGCAGGAGTGGTGAGCAGTCTTGT 899
Query 1076 CCAGCTTGGACTGTGCATCAACCTCTTCTTCACCTTCCCCTTGATGATGAATCCAGTGTT 1135
||||| || || ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 900 GCAGCTGGGGCTCTGCATCAACCTTTTCTTCACCTTCCCCTTGATGATGAACCCTGTGTT 959
Query 1136 TGAGATAGTGGAGAGGCGTTTCT-CACGCGGGATGTACTCTGCG--TGGCTCAGATGGGT 1192
|||||| |||||||| ||||||| | | || ||||| ||||| |||||||||||| |
Sbjct 960 TGAGATCGTGGAGAGACGTTTCTGGA-GTGGAATGTA--CTGCGTCTGGCTCAGATGGCT 1016
Query 1193 ACTCGTCTTAGCAGTGAC-TCTGGTGGCTCTTTTTGTGCCAAACTTTGCAGATTTTTTGT 1251
|| ||||| |||||||| | |||||||||| || |||||||||||||||||||||||||
Sbjct 1017 GCTTGTCTTGGCAGTGACGT-TGGTGGCTCTCTTGGTGCCAAACTTTGCAGATTTTTTGT 1075
Query 1252 CATTGGTTGGCAGCAGCA-CTTGCTGTGTGTTAGGCTTTGTGTTACCTGCATTGTTTCAT 1310
||||||||||||||||| || |||||| ||| ||||||||||| ||| | |||||||||
Sbjct 1076 CATTGGTTGGCAGCAGCGTCT-GCTGTGCGTTGGGCTTTGTGTTGCCTTCTTTGTTTCAT 1134
Query 1311 -TTATTGGTGTTCAAGGAAGAGATGGGGTGGCTGCAATGGAG-TTCAGACACAGCGATTG 1368
|||| ||| ||||| || || ||||||||| |||| | || || |||| | |||
Sbjct 1135 CTTAT-GGTCTTCAAAGACGAAATGGGGTGGAAGCAACG-AGCTTTAGACGTGGGGATCC 1192
Query 1369 TGGTACTAGGTGTGGTTCTTGCTGTGTCGGGAACTTGGAGTTCCCTGAGTGAGATCTTC 1427
|| |||| ||||| |||||| ||| || || |||||||||||||||||||||||||||
Sbjct 1193 TGCTACTGGGTGTCATTCTTGGTGTCTCAGGTACTTGGAGTTCCCTGAGTGAGATCTTC 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62506092045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5