BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38260.1
Length=1502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943791 jgi|Araly1|943791|scaffold_700020.1 1376 0.0
Ahg490589 jgi|Araly1|490589|fgenesh2_kg.7__22__AT4G38250.1 159 4e-38
Ahg943792 jgi|Araly1|943792|scaffold_700021.1 100 2e-20
> Ahg943791 jgi|Araly1|943791|scaffold_700020.1
Length=862
Score = 1376 bits (745), Expect = 0.0
Identities = 829/869 (95%), Gaps = 8/869 (1%)
Strand=Plus/Plus
Query 499 GTTCGTCGGAGGAGAAGAGAATGTGCATAGCAGTATTTCTGTGGCAATCGCATCCGCTGT 558
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1 GTTCGTTGGAGGAGAAGAGAATGTGCATAGCAGTGTTTCTGTGGCAATCGCATCCGCTTT 60
Query 559 ACCCTTTTCTTCTATTTCTCAACAGAGATGAAGATCACAACAGGGCGACAGAGGCGCTGC 618
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct 61 ACCCTTTTCTTCTATTTCTCAACAGAGATGAATATCACAACAGGGCGACGGAGGCGATGC 120
Query 619 GTTGGTGGGAAGACGGAGAGACGGTGGGAGGAAGAGACCTTGTTGGCGGCGGGACGTGGC 678
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 GTTGGTGGGAAGACGGAGAGACGGTGGGAGGAAGAGACCTGGTTGGCGGCGGGACGTGGC 180
Query 679 TGGGCTGCACGAGGCATGGCCGTCTGGCTTTCCTCACCAATTTCAAGGAAGCCTCCTCCT 738
|||| ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 181 TGGGGTGCACGAGGCACGGCCGTCTCGCTTTCCTCACCAATTTCAGGGAAGCCTCCTCCT 240
Query 739 TCCCTGCTGCTAAATCCCGTGGAGATCTGCCTCTTCGTTACTTGCAGAG-CGAAAAGAGT 797
|||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||
Sbjct 241 TCCCTGCTGCTAAATCCCGTGGAGATCTGCCTATTCGTTACTTGCAGAGCCG-AAAGAGT 299
Query 798 CCGGCCGAGTTTGCCGAGGAGATCCAAGACGAAATTTCACTCTACAATGGCTTTAACCTG 857
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 300 CCGGCCGAGTTTGCCGAGGAGATCCAAGACGAAATTTCACTATACAATGGCTTCAACCTG 359
Query 858 GTTGTCGCTCATGTCTTGTCCAAATCCATGATTTACATTACCAACCGACCACCCCACGGT 917
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 360 GTTGTCGCTCATGTCTTGTCCAAATCCATGATTTACATTACCAACCGGCCACCCCACGGT 419
Query 918 GACAAGCTCGTGACGCAAGTCTCTCCCGGGATCCATGTCCTTTCCAACGCCAACCTCGAC 977
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CACAAGCTCGTGACGCAAGTCTCTCCCGGGATCCATGTCCTTTCCAACGCCAACCTCGAC 479
Query 978 TCCCCTTGGCCCAAGTGTCTGAGGCTGAGGGAGGGTTTCCAACAGCTTCTGGCTGAGAAC 1037
|| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 480 TCTCCTTGGCCCAAGTGTCTGAGGCTGAGAGAGTGTTTCCAACAGCTTCTGGCTGAGAAC 539
Query 1038 GGGAGCGGTGAATTCCCGGTGAAGACCATGGTGGAGGAGGTGATGACCAATACTGTCAAG 1097
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 540 GGGAGCCGTGAATTCCCGGTGAAGACCATGGTCGAGGAGGTGATGACCAATACTGTCAAG 599
Query 1098 GACGAAGAAACCGAGCTACCTCACGTTTTCACACCAGAGACGGAATACCATCTCAGCTCC 1157
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 600 GACGAAGAAACCGAGCTACCTCACGTTTTCACACCTGAGACGGAATACCATCTCAGCTCC 659
Query 1158 ATCTTCGTCGACATGCAGAGACCAACTGGGCGTTATGGGACCAGAAGCATCTCTGCGATC 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 ATCTTCGTCGACATGCAGAGACCAACTGGGCGTTATGGGACCAGAAGCATCTCGGCGATC 719
Query 1218 ATCGTCAAGTCCCATGGAGATGGTGGTGGTGATGGTGAGATTTGCTTCTACGAGAGGCAT 1277
| | ||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||
Sbjct 720 AGCATCAAGTCCCATGGTGATGGTGATGGTGATGGTGAGGTATGCTTCTACGAGAGGCAT 779
Query 1278 CTTGAAGAAGGCGATTCATGGAAGGAACACACTCAACAGTTTGTAATAATACAAAACCAA 1337
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 CTTGAAGAAGGTGATTCATGGAAGGAACACAATCAACAGTTTGTAATAATACAAA----- 834
Query 1338 AGCATTTGATTAGCTAGCCAGGCTTATTT 1366
||||||||||||||||||| ||||||||
Sbjct 835 -GCATTTGATTAGCTAGCCATGCTTATTT 862
> Ahg490589 jgi|Araly1|490589|fgenesh2_kg.7__22__AT4G38250.1
Length=1597
Score = 159 bits (86), Expect = 4e-38
Identities = 105/114 (92%), Gaps = 1/114 (1%)
Strand=Plus/Minus
Query 1389 CATTGAGAAATCAAAACTCTCACATATGTTGTACATGTAAACACAAAACAGAAGACAGAG 1448
||||||||| |||||||||| ||||| |||| |||||| |||||||||||||||||||
Sbjct 1597 CATTGAGAACCCAAAACTCTCCCATATATTGTGTATGTAATCACAAAACAGAAGACAGAG 1538
Query 1449 CTGATCTCTTTTATTCCAAACCATCAAAATACAAATACAATCACAGTTACTCTT 1502
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1537 CTGATCTCTTTTATTCCAA-CCATCAAAATACAAATACAATCACAATTACTCTT 1485
> Ahg943792 jgi|Araly1|943792|scaffold_700021.1
Length=2087
Score = 100 bits (54), Expect = 2e-20
Identities = 56/57 (98%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 61 GGTGCTTGTGACTCTAAAATGGCTCCACCGACATGAACAGCATGTAGCACTACTACC 117
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 119 GGTGCTTGTGACTCTAAAATGGCTCCACCGACATGAACAGCATGTAGCACCACTACC 63
Score = 89.8 bits (48), Expect = 5e-17
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 255 TACCAGCGATAAAAAGGCGGCGCATGTAGAGAACGTCGTCATCTGGATCTGACTGATATT 314
|||||||||||| ||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 66 TACCAGCGATAAGAAGGCGGCGTTTCTCGAGAACGTCGTCATCTGGATCTGACTGATATC 7
Query 315 ACCACA 320
||||||
Sbjct 6 ACCACA 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56221201620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5