BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38270.1
Length=2252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943792 jgi|Araly1|943792|scaffold_700021.1 3421 0.0
> Ahg943792 jgi|Araly1|943792|scaffold_700021.1
Length=2087
Score = 3421 bits (1852), Expect = 0.0
Identities = 2012/2090 (96%), Gaps = 8/2090 (0%)
Strand=Plus/Plus
Query 38 TGTGGTAATATCAGTCAGATCCAGATGACGACGTTCTCTACATGCGCCGCCTTTTTATCG 97
|||||| ||||||||||||||||||||||||||||||| | | ||||||||| ||||||
Sbjct 1 TGTGGTGATATCAGTCAGATCCAGATGACGACGTTCTCGAGAAACGCCGCCTTCTTATCG 60
Query 98 CTGGTAGTAGTGCTACATGCTGTTCATGTCGGTGGAGCCATTTTAGAGTCACAAGCACCC 157
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTGGTAGTGGTGCTACATGCTGTTCATGTCGGTGGAGCCATTTTAGAGTCACAAGCACCC 120
Query 158 CACAGAGAACTTAAAGCTTATCGTCCGCTGCAAGATAATAATCTACAGGAGGTGTATGCT 217
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 121 CACAGAGAACTTAAAGCTTATCGTCCGCTACAAGATAATAATCTAGAGGAGGTGTATGCT 180
Query 218 TCCTCAGCTGCTGCAGTGCACTACGATCCAGATCTGAAAGATGTGAACATAGTTGCGACA 277
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 181 TCCTCAGCTGCTGCAGTGCACTATGATCCAGATCTGAAAGATGTGAACATAGTTGCCACA 240
Query 278 TACAGTGACCATTACGGCAATATACGCCTTGGTAGGGTGAAAATGGGGGATCTTTCACCT 337
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 241 TACAGTGACCATTACGGCAATATACGGCTTGGTAGGGTGAAAATGGGGGATCTTTCAACT 300
Query 338 TCTTGGGTTTTGGAGAATCCTGCCTATCAAGTTAGCCGCA-AAACAAAAGGTTCGCAGCT 396
||||||||||| |||||||||||||||||||||||| ||| ||| ||||||| |||||||
Sbjct 301 TCTTGGGTTTTCGAGAATCCTGCCTATCAAGTTAGCGGCAGAAA-AAAAGGTCCGCAGCT 359
Query 397 AGTTATACCACGGGATTCATTTCAAAATGATACTGGAATGGAAGATAATGCAAGCCATTC 456
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 360 AGTTATACCACGGGATTCATTTCAAAATGATACTGGAATCGAAGATAATGCAAGCCGTTC 419
Query 457 TACAACTAATCAGACTGATGAAAGCGAAAATCAGTTTCCAAACGTGGATTTTGCAAGCCC 516
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 AACAACTAATCAGACTGATGAAAGCGAAAATCAGTTTCCAAACGTGGAATTTGCAAGCCC 479
Query 517 AGCAAAACTGAAGCGGCAGATTTTACGTCAGGAAAGGAGAGGTCAACGAACTTTAGAGCT 576
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 AGCAAAACTGAAGCGGCAGATTTTACGTCAGGAGAGGAGAGGTCAACGAACTTTAGAGCT 539
Query 577 GATCCGACAAGAAAAGGAAACTGATGAGCAGATGCAAGAAGCAGCCATTCAGAAGTCAAT 636
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 540 GATCCAACAAGAAAAGGAAACTGATGAGCAGATGCAAGAAGCAGCCATTGAGAAGTCAAT 599
Query 637 GAGCTTTGAAAACTCAGTCATAGGGAAATACAGTATATGGAGGAGAGACTATGAGAGCCC 696
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 GAGCTTTGAAAACTCAGTCATAGGAAAATACAGTATATGGAGGAGAGACTATGAGAGCCC 659
Query 697 AAATGCTGATGCTATCTTGAAGCTTATGAGAGACCAGATCATAATGGCAAAAGCATATGC 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAATGCTGATGCTATCTTGAAGCTTATGAGAGACCAGATCATAATGGCAAAAGCATATGC 719
Query 757 AAATATTGCCAAATCAAAAAATGTAACCAATCTGTACGTTTTCTTGATGCAGCAGTGTGG 816
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAATATTGCCAAATCTCAAAATGTAACCAATCTGTACGTTTTCTTGATGCAGCAGTGTGG 779
Query 817 AGAAAATAAACGTGTTATAGGTAAAGCAACCTCTGATGCTGACCTTCCTTCAAGCGCTCT 876
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 AGAAAATCAACGTGTTATAGGTAAAGCAACCTCTGATGCCGACCTTCCTTCAAGCGCTCT 839
Query 877 TGATCAAGCAAAAGCCATGGGCCATGCACTCTCTCTTGCAAAAGACGAGTTATATGACTG 936
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 TGATCAAGCAAAAGCCATGGGCCATGCTCTCTCTCTTGCAAAAGACGAGTTATATGACTG 899
Query 937 CCATGAACTTGCAAAAAAGTTCCGGGCCATCCTTCAGTCCACTGAACGCAAAGTAGATGG 996
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 CCATGAACTTGCAAAAAAGTTCCGGGCCATGCTTCAGTCCACTGAACGCAAAGTAGATGG 959
Query 997 ACTGAAGAAAAAGGGAACCTTCTTAATTCAGCTAGCTGCCAAAACATTTCCCAAGCCATT 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ACTGAAGAAAAAGGGAACCTTCTTAATTCAGCTAGCTGCCAAAACATTTCCCAAGCCATT 1019
Query 1057 GCATTGCCTGAGTCTGCAGCTAGCGGCAGACTATTTTATTCTAGGTTTCAATGAAGAGGA 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1020 GCATTGCCTGAGTCTGCAGCTAGCGGCAGACTATTTTATTCTAGGTTTCAATGAACAGGA 1079
Query 1117 TGCAGTGAAAGAGGATGTCAGTCAAAAGAAGCTTGAAGATCCTTCGCTCTATCACTATGC 1176
||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||||||
Sbjct 1080 TGCAGTGAAAGAGGATGCCAGTCGAAAGAAGTTTGAAGATCCTTCTCTCTATCACTATGC 1139
Query 1177 GATCTTTTCGGATAACGTTCTGGCTACATCAGTGGTGGTGAACTCCACTGTCTTGAATGC 1236
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1140 GATATTTTCAGATAACGTTCTGGCTACATCAGTGGTTGTGAACTCCACTGTCTTGAATGC 1199
Query 1237 AAAGGAACCGCAGAGGCATGTGTTCCATATAGTAACTGACAAACTGAATTTTGGTGCAAT 1296
|||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1200 AAAGGAACCGCAGAAGCATGTGTTCCATATAGTAACTGACAAATTGAATTTTGCTGCAAT 1259
Query 1297 GAAGATGTGGTTTCGCATCAATGCTCCTGCTGATGCGACGATTCAAGTTGAAAACATAAA 1356
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||
Sbjct 1260 GAAGATGTGGTTTCGCATCAGTGCTCCTGCTGATGCGACAATTCAAGTTGAAAACATCAA 1319
Query 1357 TGATTTCAAGTGGCTGAACTCCTCTTACTGCTCTGTTCTACGGCAGCTTGAATCTGCAAG 1416
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1320 TGATTTCAAGTGGCTGAATTCCTCTTACTGCTCTGTTCTACGACAGCTTGAATCTGCGAG 1379
Query 1417 GCTGAAAGAATACTATTTCAAAGCAAATCATCCTTCATCAATCTCAGCTGGCGCAGATAA 1476
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1380 GCTGAAAGAATACTATTTCAAAGCAAATCATCCTTCATCAATCTCTGCTGGCGCGGACAA 1439
Query 1477 TCTAAAGTACCGCAACCCAAAGTATCTATCGATGCTGAATCATCTCAGATTCTACCTTCC 1536
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1440 TCTAAAGTACCGCAACCCAAAGTATCTGTCGATGCTGAATCATCTCAGATTCTACCTTCC 1499
Query 1537 TGAGGTTTATCCGAAGCTGGAGAAGATTCTGTTTCTAGACGATGACATTGTGGTGCAGAA 1596
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||
Sbjct 1500 TGAGGTTTATCCGAAGCTGGAGAAGATCCTGTTTCTGGACGATGACATCGTGGTGCAAAA 1559
Query 1597 GGACCTGGCACCACTATGGGAAATAGACATGCAAGGAAAAGTGAATGGTGCGGTGGAGAC 1656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GGACCTGGCACCACTATGGGAAATAGACATGCAAGGAAAAGTGAATGGTGCGGTGGAGAC 1619
Query 1657 GTGCAAGGAGAGCTTCCACAGATTTGACAAGTACCTCAACTTCTCAAATCCAAAGATTTC 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1620 GTGCAAGGAGAGCTTCCACAGATTTGACAAGTACCTCAACTTCTCAAATCCAAAGATCTC 1679
Query 1717 AGAGAATTTTGACGCTG-GTGCTTGTGGGTGGGCATTTGGGATGAATATGTTTGACCTGA 1775
||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 AGAGAATTTCGAGGC-GAGTGCTTGTGGGTGGGCATTTGGGATGAATATGTTTGACCTGA 1738
Query 1776 AAGAGTGGAGGAAACGGAACATTACAGGGATATATCACTATTGGCAAGACTTGAATGAAG 1835
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1739 AAGAGTGGAGGAAACGGAACATTACGGGGATATATCACTATTGGCAAGACATGAATGAAG 1798
Query 1836 ACAGAACACTGTGGAAGCTGGGATCGTTGCCACCGGGGCTGATAACATTTTACAACCTGA 1895
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1799 ACAGAACACTGTGGAAGCTGGGGTCGTTGCCACCGGGGCTGATAACATTTTACAACCTGA 1858
Query 1896 CGTATGCAATGGATAGGAGCTGGCACGTACTAGGGCTGGGATATGACCCAGCGCTAAACC 1955
| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1859 CATATGCAATGGAGAGGAGCTGGCACGTACTGGGGCTGGGATATGACCCAGCGCTAAACC 1918
Query 1956 AAACAGCAATAGAGAATGCAGCGGTAGTGCATTACAATGGGAACTACAAGCCATGGCTGG 2015
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1919 AAACAGCAATAGAGAATGCGGCGGTTGTGCATTACAATGGGAACTACAAGCCATGGCTGG 1978
Query 2016 GTTTAGCATTCGCCAAGTACAAACCGTACTGGTCCAAGTACGTTGAGTACGACAACCCTT 2075
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1979 GTTTGGCATTCGCCAAGTACAAACCGTACTGGTCCAAGTACGTTGAGTATGACAACCCTT 2038
Query 2076 ATCTCCGACGGTGCGACATCAATGAATGAATGAAGAGATGGTGGAGGTAG 2125
||||||| |||||||||||||||||||||| || || || |||||||||
Sbjct 2039 ATCTCCGTCGGTGCGACATCAATGAATGAA-GA-GAT-TG-TGGAGGTAG 2084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84788885370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5