BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G38280.1

Length=990
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490593 jgi|Araly1|490593|fgenesh2_kg.7__26__AT2G45250.1           520    1e-146


> Ahg490593 jgi|Araly1|490593|fgenesh2_kg.7__26__AT2G45250.1
Length=860

 Score =  520 bits (281),  Expect = 1e-146
 Identities = 378/421 (90%), Gaps = 21/421 (5%)
 Strand=Plus/Plus

Query  170  TGGAATCTCCAGCCACTACTAATGCTGCAAGCGGTCGACTTGTTTATGTCCGGAGAAGAG  229
            |||| ||||| | | | ||||||||||| |||||||||||||||||||| || || ||||
Sbjct  185  TGGAGTCTCC-GGC-C-ACTAATGCTGCTAGCGGTCGACTTGTTTATGTGCGCAGGAGAG  241

Query  230  TGGAGGTTGACACATCCAAAGCAGCTGCTAGCACTACTAATCCGAACCCGCCTCCTACTA  289
            |||||||||||||||||||||||||||| ||  | ||||| |||||||||    |  |||
Sbjct  242  TGGAGGTTGACACATCCAAAGCAGCTGCGAG--C-ACTAACCCGAACCCG----C--CTA  292

Query  290  AGGCACCACTTCAAATACCTTCATCACCCGCACAGGAACCAACCCCTACCAGCCATAAGT  349
            |||  || | ||    ||   || ||   ||||||||||||||  |||||||||||||||
Sbjct  293  AGGTTCC-C-TC----ACAGGCA-CA--GGCACAGGAACCAACTACTACCAGCCATAAGT  343

Query  350  TAGACTGGGAAGAGCGTTACCTTCATCTTCAAATGCTTCTTAACAAGCTTAATCAATCTG  409
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  344  TAGACTGGGAAGAGCGTTACCTTCATCTTCAAATGCTTCTTAATAAGCTTAATCAATCTG  403

Query  410  ATCGGACCGATCATGTTCAGATGCTTTGGTCACTTTCCTCCGCCGAGCTTAGCAAGCATG  469
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  404  ATCGGACAGATCATGTTCAGATGCTTTGGTCACTTTCCTCCGCCGAGCTTAGCAAGCATG  463

Query  470  CTGTTGACTTGGAAAAGAGGTCTATTCAGTTCTCTCTCGAGGAAGCGAGAGAGATGCAGC  529
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  464  CTGTTGACTTGGAAAAGAGGTCTATTCAATTCTCTCTCGAGGAAGCGAGAGAGATGCAGC  523

Query  530  GCGTAGCAGCTTTAAACATGTTAGGAAGGTCTGTGAATAGTCTAAAATCTACATCAAATG  589
            | ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct  524  GTGTAGCAGCTTTAAACGTGTTAGGAAGGTCTGTCAATAGTCTAAAATCTACATCAAATG  583

Query  590  A  590
            |
Sbjct  584  A  584



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36788614905


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5