BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38340.1
Length=2304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352841 jgi|Araly1|352841|fgenesh1_pg.C_scaffold_7000014 3271 0.0
Ahg492460 jgi|Araly1|492460|fgenesh2_kg.7__1893__AT4G24020.1 97.1 5e-19
> Ahg352841 jgi|Araly1|352841|fgenesh1_pg.C_scaffold_7000014
Length=2082
Score = 3271 bits (1771), Expect = 0.0
Identities = 1991/2096 (95%), Gaps = 19/2096 (1%)
Strand=Plus/Plus
Query 214 ATGGAAGAAAGCAACAACTCGGCCGTTGTGGATTTTCCTGACAACTTTATGGACCAGCTC 273
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 ATGGAAGAAAGCAACAACTCGGCCGTTGTGGATTTCCCTGACAACTTTATGGACCAACTC 60
Query 274 TTGTGGGAGGAGT---GCTGGGAAGAAGAGGCAACGCAGCATGACCAGGCATTATCATCA 330
||||||||||||| ||||||||||||||||||||||| ||||||||||| | | ||
Sbjct 61 TTGTGGGAGGAGTGCAGCTGGGAAGAAGAGGCAACGCAGAATGACCAGGCA-T-T-AT-- 115
Query 331 CCATCAGGGCTGAAGGAGAGGGTGGCTTGCGCCATGGGGCACCTGCAAGAGGTGATGGGA 390
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 -CATCAGGGTTGAAGGAGAGGGTGGCTTGCGCCATGGGGCACCTGCAAGAGGTGATGGGA 174
Query 391 GAGAGGGAGTTGCTGATCCAGCTGTGGGTGCCTGTTGAGACAAGGAGCGGCCGAGTGCTG 450
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 175 GAGAGGGAGTTGCTGATCCAGCTGTGGGTGCCTGTTGAGACAAGGAGCGGACGAGTGCTG 234
Query 451 AGCACGGAGGAGCAGCCTTACTCTATCAACACCTTCTCCCAGAGCCAGAGCCTGGCCCTC 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 235 AGCACGGAGGAGCAGCCTTACTCTATCAACACCTTCTCCCAGAGCCAGAGCCTGGGCCTC 294
Query 511 TACCGAGACGCCTCAGCTGGCTACAGCTTCGCAGCAGAAGTTGGGTCGGAGCAGCTGGTG 570
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 295 TACAGAGACGCCTCAGCTGGCTACAGCTTCGCAGCAGAGGTTGGGTCGGAGCAGCTGGTG 354
Query 571 GGGCTGCCTGGGCGTGTGTTCCTGAGGAGAATGCCTGAGTGGACCCCAGACGTTCGGTTT 630
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 355 GGGCTGCCTGGGCGTGTGTTCCTGAGGAGGATGCCTGAGTGGACCCCAGACGTTCGGTTT 414
Query 631 TTCAGGAAGGAGGAGTACCCTCGCATTGGATACGCCCGCAGGTACCAGGTTCGAGCCACC 690
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 415 TTCAGGAGGGAGGAGTACCCTCGCATAAGATACGCCCGCAGGTACCAGGTTCGAGCCTCC 474
Query 691 CTCGCCCTCCCACTCTTCCAAGGAACGTCCGGGAACTGCGTGGCCGTGATGGAGATGGTC 750
||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 475 CTCGCTCTCCCACTCTTCCAAGGGACATCCGGGAACTGCGTGGCCGTGATGGAAATGGTC 534
Query 751 ACCACTCACCGCAACTTGGAGTATGCCTCCCAACTC-AGCACCATCTGCCATGCCCTTGA 809
|||||||||||||||||||||||||||||||| ||| | |||||||||||| |||||||
Sbjct 535 ACCACTCACCGCAACTTGGAGTATGCCTCCCAGCTCCA-CACCATCTGCCACACCCTTGA 593
Query 810 GGCCTTTGATCTCAGGACTTCACAAACCTCCATCGTTCCAGCCTCTCTCAAGGTCACCtc 869
||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| |
Sbjct 594 GGCCTTTGATCTCCGGACTTCTCAAGCCTCCATCGTTCCAGCCTCTCTCAAGGTCAC-T- 651
Query 870 ttcttcttcttcttcttcAAGAACAGAGGTGGCCTCTATTCTCCAAGGCATCTGCAGTTC 929
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 T-CTTCTTCTTCTTCATCAAGAACAGAGGTGGCCTCTATTCTCCAAGGCATCTGCAGTTC 710
Query 930 ACACGGACTCCCTCTAGCCGTCACGTGGGGTCACCAAGACTCCTCATCCTGCCTTTCGGC 989
|||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 711 ACACCGACTCCCTCTAGCCGTCACGTGGGCTCACCAAGACTCCCCATCCTGCCTTTCGGC 770
Query 990 TCTAATATCGGCCTCTTACGCCGCTGACCACGGCAGCCGCTGCTTCCTGGCCGCCTGCTC 1049
||| || || |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 771 TCTGATCTCCGCCTCTTACGCCGCTGACCAAGACAGCCGCTGCTTCCTGGCCGCCTGCTC 830
Query 1050 AGAGCACCATCTACTCGGGGGCGAAGGAATCGCTGGAAGAGCTTTTGCTACCAAGAAACA 1109
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 831 TGAGCACCATCTACTCGTGGGCGAAGGAATCGCTGGAAGAGCTTTCGCTACCAAGAAACA 890
Query 1110 GTGTTTCGCAACAGATGTTGCCATCTTCAGCAAGTGGAGCTACCCTCTCTCCCACTACGC 1169
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 891 GTGTTTCGCAACAGATGTGGCCATCTTCAGCAAGTGGAGCTACCCTCTCTCCCACTACGC 950
Query 1170 CAAGATGTTCGACCTCCACGCTGCTCTTGCCGTCCCTATCCTGACAAGAGGCAACCGCAC 1229
|| ||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 951 CAGGATGTTCCATCTCCACGCTGCTCTTGCCGTCCCTATCCTGACCAGAGGCAACCGCAC 1010
Query 1230 CGTCCAATTTGTTCTCGAGCTCTTCTTCCCGAGAGACTGTCTTGACATCCAAACTCATAG 1289
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1011 TGTCCAATTTGTTGTCGAGCTCTTCTTCCCGAGAGACTGTCTTGACATCCAAACTCAGAG 1070
Query 1290 TCTGACCCTCGCCTCCCAACTCAAGCTACGCTTCCAGAGCTCACCACATCTGATGGTAGA 1349
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1071 CCTGACCCTCGCCTCCCAACTCAACCTACGCTTCCAGAGCTCACCACATCTGATGGTAGA 1130
Query 1350 CGACAACCAAATTGCAGAGGAAGTGAGAGACGCAGCCACACCACCCCTGACACAAGAGGA 1409
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 CGACAACCAAATTGCACAACAAGTGAGAGACGCAGCCACACCACCCCTGACACAAGAGGA 1190
Query 1410 TCCCAAGGGCAAACAAGTGTCGTTTTCCTTTTCTTCTGCTTCCTCTCTCGAGAACCGAAA 1469
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1191 TCCCAAGGGCAAACAAGTGTCGTTTTCCTTTTCTTCTTCTTCCTCTCTGGAGAACCGAAA 1250
Query 1470 ACGCAAGACAAAGGCTGAAAAGGATATCACTTTGGACACTCTCCGACAACACTTTGCTGG 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 ACGCAAGACAAAGGCTGAAAAGGATATCACTTTGGACACTCTCCGACAACACTTTGCTGG 1310
Query 1530 CAGCCTAAAGGACGCCGCTAAAAACATTGGTGTATGTCCGACGACCTTGAAGAGGATATG 1589
|||||| |||||||||||||||||||||||||||||||| || |||||||||||| | ||
Sbjct 1311 CAGCCTTAAGGACGCCGCTAAAAACATTGGTGTATGTCCCACAACCTTGAAGAGGGTCTG 1370
Query 1590 CAGACAAAACGGAATCTCAAGGTGGCCATCGAGGAAGATCAAGAAAGTTGGACATTCTCT 1649
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1371 CAGACAACACGGAATCTCAAGGTGGCCATCGAGGAAGATCAAGAAAGTAGGACATTCTCT 1430
Query 1650 TCGAAAACTGCAGGTGGTGATGGACTCTGTTGAAGGAGTTCAAGGCTCTCTCCATCTCGC 1709
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 TCGGAAACTGCAGGTGGTGATGGACTCTGTTGAAGGAGTTCAAGGCTCTCTCCATCTCGC 1490
Query 1710 CTCCTTCTACTCAAGTTTCCCTCAACTACAAtcttcttcttcttcttcttttcctttcAT 1769
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1491 CTCCTTCTACTCAAGCTTCCCTCAACTTCAATCTTCTTCTTCTTCTTCTTTTCCTTTGAT 1550
Query 1770 TAACCCAACCCAAACTGTCCATGTGCCTCCAAAGTCACCACCTTCGTCATCTGGCAGCCA 1829
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 TAATCCAACCCAAACTGTCCATGTGCCTCCAAAGTCACCACCTTCGTCATCTGGCAGCCA 1610
Query 1830 GAGCTCGTCAGGTTCAAGCACTTGTTGCTCCTCCGAAGAGCAACAACTTGGTGGCTTCCA 1889
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1611 GGGCTCTTCAGGTTCAAGCACTTGTTGCTCCTCCGAAGAGCAACAACTTGGTGGCTTCGA 1670
Query 1890 AAAACCAGCTCTCAGTCATCCACAACTGCTTACTCTAAGCAGCATGCACGAGGACCAAAG 1949
||| ||| |||||||||||||||| |||||||||||||||||| ||||||||||||| ||
Sbjct 1671 AAACCCATCTCTCAGTCATCCACAGCTGCTTACTCTAAGCAGCCTGCACGAGGACCAGAG 1730
Query 1950 GCCTGTTCGTGTGACCTCATCCCTACCCCCACTGCCATCCGCAACTA-CTCCAAGGAAAG 2008
| | |||||||| |||||||||||||||||| |||||||| |||| | ||||||||||||
Sbjct 1731 GGCAGTTCGTGTAACCTCATCCCTACCCCCATTGCCATCCTCAAC-AGCTCCAAGGAAAG 1789
Query 2009 CAAAGGACGGGATGAAAGTGAAGGCTATGTTTGGAGATTCGATGCTGAGAATGAGCCTGC 2068
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1790 CAAAAGACGGGATGAAAGTGAAAGCTATGTTTGGAGATTCGATGCTGAGGATGAGCCTGC 1849
Query 2069 TTCCACACTCTCGTCTCACAGACCTCAGAAGAGAGATCGCAAAGCGGTTTGGGATGGATG 2128
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1850 AGCCCCACTCACGTCTCACAGACCTCAGAAGAGAGATCGCAAAGCGGTTTGGGATGGACG 1909
Query 2129 ATGTTTTGAGAAGTAACTTCAGTCTCAAGTATCTAGACGATGATCAAGAATGGGTTCTCT 2188
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 ATGTTTTGACAAGTAACTTCAGTCTCAAGTATCTAGACGATGATCAAGAATGGGTTCTCT 1969
Query 2189 TGACGTGCGATGCTGATCTTGAGGAGTGCATACAAGTCTACAAGTCCTCCTCTCTTAAAG 2248
||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 1970 TGACGTGCGATGCTGATCTTGAGGAGTGCATACAAGTCTACAAGTCCTC-TCT-T-AAAG 2026
Query 2249 AAACTATCAGAATATTGGTTCACCATCCTCTTTCTCGTCCTTCCTTTGGTTCTTAA 2304
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2027 AAACTATCAGAATATTGGTTCACCGTCCTCTTTCTCTTCCTTCCTTTGGTTCTTAA 2082
> Ahg492460 jgi|Araly1|492460|fgenesh2_kg.7__1893__AT4G24020.1
Length=3184
Score = 97.1 bits (52), Expect = 5e-19
Identities = 94/114 (82%), Gaps = 4/114 (4%)
Strand=Plus/Plus
Query 1526 CTGGCAGCCT-AAAGGACGCCGCTAAA-AACATTGGTGTATGTCCGACGACCTTGAAGAG 1583
|||| || || ||| ||||| || ||| | | |||| || || |||||||| ||||| |
Sbjct 1942 CTGGAAGTCTCAAA-GACGCTGC-AAAGAGCCTTGGAGTTTGCCCGACGACAATGAAGCG 1999
Query 1584 GATATGCAGACAAAACGGAATCTCAAGGTGGCCATCGAGGAAGATCAAGAAAGT 1637
|| ||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 2000 AATTTGCAGACAACACGGAATCTCGCGGTGGCCATCGAGGAAGATCAAGAAAGT 2053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86769578110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5