BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G38340.1 Length=2304 Score E Sequences producing significant alignments: (Bits) Value Ahg352841 jgi|Araly1|352841|fgenesh1_pg.C_scaffold_7000014 3271 0.0 Ahg492460 jgi|Araly1|492460|fgenesh2_kg.7__1893__AT4G24020.1 97.1 5e-19 > Ahg352841 jgi|Araly1|352841|fgenesh1_pg.C_scaffold_7000014 Length=2082 Score = 3271 bits (1771), Expect = 0.0 Identities = 1991/2096 (95%), Gaps = 19/2096 (1%) Strand=Plus/Plus Query 214 ATGGAAGAAAGCAACAACTCGGCCGTTGTGGATTTTCCTGACAACTTTATGGACCAGCTC 273 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1 ATGGAAGAAAGCAACAACTCGGCCGTTGTGGATTTCCCTGACAACTTTATGGACCAACTC 60 Query 274 TTGTGGGAGGAGT---GCTGGGAAGAAGAGGCAACGCAGCATGACCAGGCATTATCATCA 330 ||||||||||||| ||||||||||||||||||||||| ||||||||||| | | || Sbjct 61 TTGTGGGAGGAGTGCAGCTGGGAAGAAGAGGCAACGCAGAATGACCAGGCA-T-T-AT-- 115 Query 331 CCATCAGGGCTGAAGGAGAGGGTGGCTTGCGCCATGGGGCACCTGCAAGAGGTGATGGGA 390 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 116 -CATCAGGGTTGAAGGAGAGGGTGGCTTGCGCCATGGGGCACCTGCAAGAGGTGATGGGA 174 Query 391 GAGAGGGAGTTGCTGATCCAGCTGTGGGTGCCTGTTGAGACAAGGAGCGGCCGAGTGCTG 450 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 175 GAGAGGGAGTTGCTGATCCAGCTGTGGGTGCCTGTTGAGACAAGGAGCGGACGAGTGCTG 234 Query 451 AGCACGGAGGAGCAGCCTTACTCTATCAACACCTTCTCCCAGAGCCAGAGCCTGGCCCTC 510 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 235 AGCACGGAGGAGCAGCCTTACTCTATCAACACCTTCTCCCAGAGCCAGAGCCTGGGCCTC 294 Query 511 TACCGAGACGCCTCAGCTGGCTACAGCTTCGCAGCAGAAGTTGGGTCGGAGCAGCTGGTG 570 ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 295 TACAGAGACGCCTCAGCTGGCTACAGCTTCGCAGCAGAGGTTGGGTCGGAGCAGCTGGTG 354 Query 571 GGGCTGCCTGGGCGTGTGTTCCTGAGGAGAATGCCTGAGTGGACCCCAGACGTTCGGTTT 630 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 355 GGGCTGCCTGGGCGTGTGTTCCTGAGGAGGATGCCTGAGTGGACCCCAGACGTTCGGTTT 414 Query 631 TTCAGGAAGGAGGAGTACCCTCGCATTGGATACGCCCGCAGGTACCAGGTTCGAGCCACC 690 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 415 TTCAGGAGGGAGGAGTACCCTCGCATAAGATACGCCCGCAGGTACCAGGTTCGAGCCTCC 474 Query 691 CTCGCCCTCCCACTCTTCCAAGGAACGTCCGGGAACTGCGTGGCCGTGATGGAGATGGTC 750 ||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||| Sbjct 475 CTCGCTCTCCCACTCTTCCAAGGGACATCCGGGAACTGCGTGGCCGTGATGGAAATGGTC 534 Query 751 ACCACTCACCGCAACTTGGAGTATGCCTCCCAACTC-AGCACCATCTGCCATGCCCTTGA 809 |||||||||||||||||||||||||||||||| ||| | |||||||||||| ||||||| Sbjct 535 ACCACTCACCGCAACTTGGAGTATGCCTCCCAGCTCCA-CACCATCTGCCACACCCTTGA 593 Query 810 GGCCTTTGATCTCAGGACTTCACAAACCTCCATCGTTCCAGCCTCTCTCAAGGTCACCtc 869 ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| | Sbjct 594 GGCCTTTGATCTCCGGACTTCTCAAGCCTCCATCGTTCCAGCCTCTCTCAAGGTCAC-T- 651 Query 870 ttcttcttcttcttcttcAAGAACAGAGGTGGCCTCTATTCTCCAAGGCATCTGCAGTTC 929 | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 T-CTTCTTCTTCTTCATCAAGAACAGAGGTGGCCTCTATTCTCCAAGGCATCTGCAGTTC 710 Query 930 ACACGGACTCCCTCTAGCCGTCACGTGGGGTCACCAAGACTCCTCATCCTGCCTTTCGGC 989 |||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 711 ACACCGACTCCCTCTAGCCGTCACGTGGGCTCACCAAGACTCCCCATCCTGCCTTTCGGC 770 Query 990 TCTAATATCGGCCTCTTACGCCGCTGACCACGGCAGCCGCTGCTTCCTGGCCGCCTGCTC 1049 ||| || || |||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 771 TCTGATCTCCGCCTCTTACGCCGCTGACCAAGACAGCCGCTGCTTCCTGGCCGCCTGCTC 830 Query 1050 AGAGCACCATCTACTCGGGGGCGAAGGAATCGCTGGAAGAGCTTTTGCTACCAAGAAACA 1109 |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 831 TGAGCACCATCTACTCGTGGGCGAAGGAATCGCTGGAAGAGCTTTCGCTACCAAGAAACA 890 Query 1110 GTGTTTCGCAACAGATGTTGCCATCTTCAGCAAGTGGAGCTACCCTCTCTCCCACTACGC 1169 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 891 GTGTTTCGCAACAGATGTGGCCATCTTCAGCAAGTGGAGCTACCCTCTCTCCCACTACGC 950 Query 1170 CAAGATGTTCGACCTCCACGCTGCTCTTGCCGTCCCTATCCTGACAAGAGGCAACCGCAC 1229 || ||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 951 CAGGATGTTCCATCTCCACGCTGCTCTTGCCGTCCCTATCCTGACCAGAGGCAACCGCAC 1010 Query 1230 CGTCCAATTTGTTCTCGAGCTCTTCTTCCCGAGAGACTGTCTTGACATCCAAACTCATAG 1289 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1011 TGTCCAATTTGTTGTCGAGCTCTTCTTCCCGAGAGACTGTCTTGACATCCAAACTCAGAG 1070 Query 1290 TCTGACCCTCGCCTCCCAACTCAAGCTACGCTTCCAGAGCTCACCACATCTGATGGTAGA 1349 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1071 CCTGACCCTCGCCTCCCAACTCAACCTACGCTTCCAGAGCTCACCACATCTGATGGTAGA 1130 Query 1350 CGACAACCAAATTGCAGAGGAAGTGAGAGACGCAGCCACACCACCCCTGACACAAGAGGA 1409 |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 1131 CGACAACCAAATTGCACAACAAGTGAGAGACGCAGCCACACCACCCCTGACACAAGAGGA 1190 Query 1410 TCCCAAGGGCAAACAAGTGTCGTTTTCCTTTTCTTCTGCTTCCTCTCTCGAGAACCGAAA 1469 ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 1191 TCCCAAGGGCAAACAAGTGTCGTTTTCCTTTTCTTCTTCTTCCTCTCTGGAGAACCGAAA 1250 Query 1470 ACGCAAGACAAAGGCTGAAAAGGATATCACTTTGGACACTCTCCGACAACACTTTGCTGG 1529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1251 ACGCAAGACAAAGGCTGAAAAGGATATCACTTTGGACACTCTCCGACAACACTTTGCTGG 1310 Query 1530 CAGCCTAAAGGACGCCGCTAAAAACATTGGTGTATGTCCGACGACCTTGAAGAGGATATG 1589 |||||| |||||||||||||||||||||||||||||||| || |||||||||||| | || Sbjct 1311 CAGCCTTAAGGACGCCGCTAAAAACATTGGTGTATGTCCCACAACCTTGAAGAGGGTCTG 1370 Query 1590 CAGACAAAACGGAATCTCAAGGTGGCCATCGAGGAAGATCAAGAAAGTTGGACATTCTCT 1649 ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1371 CAGACAACACGGAATCTCAAGGTGGCCATCGAGGAAGATCAAGAAAGTAGGACATTCTCT 1430 Query 1650 TCGAAAACTGCAGGTGGTGATGGACTCTGTTGAAGGAGTTCAAGGCTCTCTCCATCTCGC 1709 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1431 TCGGAAACTGCAGGTGGTGATGGACTCTGTTGAAGGAGTTCAAGGCTCTCTCCATCTCGC 1490 Query 1710 CTCCTTCTACTCAAGTTTCCCTCAACTACAAtcttcttcttcttcttcttttcctttcAT 1769 ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1491 CTCCTTCTACTCAAGCTTCCCTCAACTTCAATCTTCTTCTTCTTCTTCTTTTCCTTTGAT 1550 Query 1770 TAACCCAACCCAAACTGTCCATGTGCCTCCAAAGTCACCACCTTCGTCATCTGGCAGCCA 1829 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1551 TAATCCAACCCAAACTGTCCATGTGCCTCCAAAGTCACCACCTTCGTCATCTGGCAGCCA 1610 Query 1830 GAGCTCGTCAGGTTCAAGCACTTGTTGCTCCTCCGAAGAGCAACAACTTGGTGGCTTCCA 1889 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1611 GGGCTCTTCAGGTTCAAGCACTTGTTGCTCCTCCGAAGAGCAACAACTTGGTGGCTTCGA 1670 Query 1890 AAAACCAGCTCTCAGTCATCCACAACTGCTTACTCTAAGCAGCATGCACGAGGACCAAAG 1949 ||| ||| |||||||||||||||| |||||||||||||||||| ||||||||||||| || Sbjct 1671 AAACCCATCTCTCAGTCATCCACAGCTGCTTACTCTAAGCAGCCTGCACGAGGACCAGAG 1730 Query 1950 GCCTGTTCGTGTGACCTCATCCCTACCCCCACTGCCATCCGCAACTA-CTCCAAGGAAAG 2008 | | |||||||| |||||||||||||||||| |||||||| |||| | |||||||||||| Sbjct 1731 GGCAGTTCGTGTAACCTCATCCCTACCCCCATTGCCATCCTCAAC-AGCTCCAAGGAAAG 1789 Query 2009 CAAAGGACGGGATGAAAGTGAAGGCTATGTTTGGAGATTCGATGCTGAGAATGAGCCTGC 2068 |||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1790 CAAAAGACGGGATGAAAGTGAAAGCTATGTTTGGAGATTCGATGCTGAGGATGAGCCTGC 1849 Query 2069 TTCCACACTCTCGTCTCACAGACCTCAGAAGAGAGATCGCAAAGCGGTTTGGGATGGATG 2128 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1850 AGCCCCACTCACGTCTCACAGACCTCAGAAGAGAGATCGCAAAGCGGTTTGGGATGGACG 1909 Query 2129 ATGTTTTGAGAAGTAACTTCAGTCTCAAGTATCTAGACGATGATCAAGAATGGGTTCTCT 2188 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1910 ATGTTTTGACAAGTAACTTCAGTCTCAAGTATCTAGACGATGATCAAGAATGGGTTCTCT 1969 Query 2189 TGACGTGCGATGCTGATCTTGAGGAGTGCATACAAGTCTACAAGTCCTCCTCTCTTAAAG 2248 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| Sbjct 1970 TGACGTGCGATGCTGATCTTGAGGAGTGCATACAAGTCTACAAGTCCTC-TCT-T-AAAG 2026 Query 2249 AAACTATCAGAATATTGGTTCACCATCCTCTTTCTCGTCCTTCCTTTGGTTCTTAA 2304 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 2027 AAACTATCAGAATATTGGTTCACCGTCCTCTTTCTCTTCCTTCCTTTGGTTCTTAA 2082 > Ahg492460 jgi|Araly1|492460|fgenesh2_kg.7__1893__AT4G24020.1 Length=3184 Score = 97.1 bits (52), Expect = 5e-19 Identities = 94/114 (82%), Gaps = 4/114 (4%) Strand=Plus/Plus Query 1526 CTGGCAGCCT-AAAGGACGCCGCTAAA-AACATTGGTGTATGTCCGACGACCTTGAAGAG 1583 |||| || || ||| ||||| || ||| | | |||| || || |||||||| ||||| | Sbjct 1942 CTGGAAGTCTCAAA-GACGCTGC-AAAGAGCCTTGGAGTTTGCCCGACGACAATGAAGCG 1999 Query 1584 GATATGCAGACAAAACGGAATCTCAAGGTGGCCATCGAGGAAGATCAAGAAAGT 1637 || ||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 2000 AATTTGCAGACAACACGGAATCTCGCGGTGGCCATCGAGGAAGATCAAGAAAGT 2053 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86769578110 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5