BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38350.2
Length=4157
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490595 jgi|Araly1|490595|fgenesh2_kg.7__28__AT4G38350.1 1572 0.0
Ahg913522 jgi|Araly1|913522|Al_scaffold_0001_3776 625 9e-178
> Ahg490595 jgi|Araly1|490595|fgenesh2_kg.7__28__AT4G38350.1
Length=3195
Score = 1572 bits (851), Expect = 0.0
Identities = 886/903 (98%), Gaps = 2/903 (0%)
Strand=Plus/Plus
Query 1807 AGGCTACTGCGTTTGTTGTAACATATCCAGTCAACAACGTCATTGGTGATTCAAGCAACG 1866
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1454 AGGCTACTGCGTTTGTTGTAACATATCCAGTTAACAACGTCATTGGTGATTCAAGCAACG 1513
Query 1867 AAAACGCAAGGGCAGTAGCATGGGAAAAATCGTTCATTCAATTAGCAAAGGAGGAGCTGC 1926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 AAAACGCAAGGGCAGTAGCATGGGAAAAATCGTTCATTCAATTAGCAAAGGAGGAGCTGC 1573
Query 1927 TACCTATGGTGCGATCCAAGAATTTGAGTCTGTCATTTTCATCCGAAAGCTCAATAGAGG 1986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1574 TACCTATGGTGCGATCCAAGAATTTGAGTCTGTCATTTTCATCCGAAAGCTCAATAGAGG 1633
Query 1987 AAGAGCTGAAAAGAGAAAGTACTGCTGATGTTATAACAATAGCTGCAAGCTATTTGGTTA 2046
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 AAGAGCTGAAAAGAGAAAGCACTGCTGATGTTATAACAATAGCTGCAAGCTATTTGGTTA 1693
Query 2047 TGTTTGTTTACATTTCGGTCACACTTGGAGATGCTCCGCAGTTCTATACCTTTTACATTT 2106
|||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||
Sbjct 1694 TGTTTGTTTACATTTCGGTCACACTTGGAGATGCGCCGCAGTTCTCTACTTTTTACATTT 1753
Query 2107 CATCAAAGGTTTTGCTCGGTCTTTCGGGGGTTGTGCTTGTCTTGCTTTCTGTACTTGGAT 2166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1754 CATCAAAGGTTTTGCTCGGTCTTTCGGGGGTTGTGCTTGTCTTGCTTTCTGTACTTGGAT 1813
Query 2167 CTGTTGGAGTTTTCAGTGCCCTTGGAGTTAAATCCACATTGATCATAATGGAAGTCATTC 2226
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1814 CTGTTGGAGTTTTCAGTGCTCTTGGAGTTAAATCCACATTGATCATAATGGAAGTCATTC 1873
Query 2227 CTTTCCTAGTCCTGGCTGTGGGAGTAGATAATATGTGCATACTGGTTCATGCTGTAAAGA 2286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1874 CTTTCCTAGTCCTGGCTGTGGGAGTAGATAATATGTGCATACTGGTTCATGCTGTAAAGA 1933
Query 2287 GACAACCTCGTGAGGTTTCTTTAGAGCAACGAATTAGCTCTGCACTTGTTGAAGTAGGTC 2346
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1934 GACAACCTCGTGATGTTTCTTTAGAGCAAAGAATTAGCTCTGCACTTGTTGAAGTAGGTC 1993
Query 2347 CATCCATAACATTGGCAAGTTTATCCGAGGTCTTGGCTTTTGCTGTTGGAGCTTTTGTTC 2406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1994 CATCCATAACATTGGCAAGTTTATCCGAGGTCTTGGCTTTTGCTGTTGGAGCTTTTGTTC 2053
Query 2407 CAATGCCAGCATGTCGTATCTTCTCCATGTTTGCAGCATTGGCTATTATGCTGGACTTCT 2466
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2054 CAATGCCAGCATGTCGTATTTTCTCCATGTTTGCAGCTTTGGCTATTATGCTGGACTTCT 2113
Query 2467 TTCTGCAAATCACCGCTTTTGTTGCGCTAATAGTTTTTGACTGCAAAAGATCTGCGGATA 2526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2114 TTCTGCAAATCACCGCTTTTGTTGCGCTAATAGTTTTTGACTGCAAAAGATCTGCGGATA 2173
Query 2527 ATAGGATTGATTGTTTCCCTTGCATAAAAGTTCCTTCATCATCTCGAGAATCTGTTGAAG 2586
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2174 ACAGGATTGATTGTTTCCCTTGCATAAAAGTTCCTTCATCATCTCAAGAATCTGTTGAAG 2233
Query 2587 GTGGAAG-GGAACCTGGGTTTCTTGAGAGATACATGAAGGAGGTTCATGCACCCGTTCTT 2645
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2234 GTGGAAGAGGA-CCTGGGTTTCTTGAGAGATACATGAAGGAGGTTCATGCACCCGTTCTT 2292
Query 2646 GGACTTTGGGGTGTAAAAATGGTTGTTGTCGCTGTATTCTTCGCTTTTGCACTGGCAAGC 2705
|||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 2293 GGACTTTGGGTTGTAAAAATGGTTGTTGTCGCTGTATTCTTGGCTTTTGCGCTGGCAAGC 2352
Query 2706 ATT 2708
|||
Sbjct 2353 ATT 2355
Score = 1461 bits (791), Expect = 0.0
Identities = 859/892 (96%), Gaps = 4/892 (0%)
Strand=Plus/Plus
Query 858 GCTTGCTCAAGTCCCGAACCCCTGCCGCCCCATGATGAAGATTCTTGCTCAATTAGAATC 917
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 577 GCTTGCTCAAGTCCCGAACCCCTGCCGCCCCATGAGGAAGATTCTTGCTCAATTAGAATC 636
Query 918 GGTCCTCTTAAGGTTAGATGCATTGAGTTATCAATGGCACTTGTATACGTCTTGCTGGTG 977
|||| |||||||||||||||||||||||||||||||| |||||||||| ||||| |||||
Sbjct 637 GGTCATCTTAAGGTTAGATGCATTGAGTTATCAATGGTACTTGTATACATCTTGTTGGTG 696
Query 978 TCTTGCTTCTTCGGATGGGCTGGTTTAAATCGAAGAAGAA-ATACGACACAGCCTCTTGA 1036
|||||||||||||||||||||| |||||||||||||| || ||| ||||||||| |||
Sbjct 697 TCTTGCTTCTTCGGATGGGCTGCTTTAAATCGAAGAA-AAGATATAACACAGCCTGGTGA 755
Query 1037 TAGCTCAAAGCCACTATTGCATCCTGTGGAAGAAGATGGAATTAATAGTGAAATGAAGGA 1096
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 756 TAGCTCAGAGCCACTATTGCATCCTGTGGAAGAAGATGGAATTAATAGTGAAACGAAGGA 815
Query 1097 AAACATACTTGGTGTCAAGGTGCAAAGACATGCTCAACTCTCTCCTGTTCAGAGATATAT 1156
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 816 AAACATACTTGGTGTCAAGGTGCAAAGACATGCTCAACTTTCTCCTGTTCAGAGATATAT 875
Query 1157 GGCAAAATTTTACAGATCATATGGGTCATGGATTGCTAGAAATCCATCTCTTGTTCTCTT 1216
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 876 GGCAAAATTTTACAGATCATATGGGTCATGGATTGCTAGAAATCCATCTCTTATTCTCTT 935
Query 1217 CATGTCAGTAGCTATTGTTCTTGCACTCTGTTCAGGTCTCTATAATTTCAAGGTGGAAAC 1276
|||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 936 CATGTCGGTGGCTATTGTTCTTGCACTCAGTTCAGGTCTCTATAATTTCAAGGTGGAAAC 995
Query 1277 ACGACCAGAAAAGTTGTGGGTTGGTCCTGAAAGCAAAGCAGCAGAAGAGAAAAAGTTCTT 1336
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 996 ACGACCAGAAAAGTTGTGGGTAGGTCCTGAAAGCAAAGCAGCAGAAGAGAAAAAGTTCTT 1055
Query 1337 TGATACCCACCTTTCGCCATTCTACAGAATCGAGCAGCTTATCTTGGCCACTGTTCCTGA 1396
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1056 TGATACCCACCTTTCGCCGTTCTACAGAATTGAGCAGCTTATCTTGGCCACTGTTCCTGA 1115
Query 1397 TCCCAAAAGTGGCAGGGCGCCTAGTATTGTAACAGATGAAAATATTCTTTTGCTTTTTGA 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 TCCCAAAAGTGGCAGGGCGCCTAGTATTGTAACAGATGAAAATATTCTTTTGCTTTTTGA 1175
Query 1457 CATACAACAGAAGGTTGATCAAATTCGTGGAAATTATTCAGGTTCAGAGGTCTCTTTGCC 1516
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1176 CATACAACAAAAGGTTGATCAAATTCGCGGAAATTATTCAGGTTCAGAGGTCTCTCTGCC 1235
Query 1517 CGACATATGTTTGAAGCCTTTGGGAGAGGATTGCGCCACTCAGAGTATTCTGCAGTATTT 1576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 CGACATATGTTTGAAGCCTTTGGGAGAGGATTGCGCCACTCAGAGTATTCTGCAGTATTT 1295
Query 1577 CAAGATGGACTCTGGAACTTTTGATGATTATGGAGGAGTTGAGCATGCTGAGTACTGTTT 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 CAAGATGGACTCTGGAACTTTTGATGATTATGGAGGAGTTGAGCATGCTGAGTACTGTTT 1355
Query 1637 CCAGCATTACACTTCATCAGAGACGTGTTTGAGCGCTTTTCAGGCGCCTGTTGATCCTAG 1696
|||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1356 CCAGCATTACACTTCAGCAGAGATGTGTTTGAGTGCTTTTCAGGCGCCTGTTGATCCTAG 1415
Query 1697 TGCAGTGTTGGGAGGATTCTCGGGGAATAATTACTCAGAGG-TAATG-GTTT 1746
|||||||||||||||||||||||||||||| || ||||||| || || ||||
Sbjct 1416 TGCAGTGTTGGGAGGATTCTCGGGGAATAACTATTCAGAGGCTACTGCGTTT 1467
Score = 944 bits (511), Expect = 0.0
Identities = 556/578 (96%), Gaps = 2/578 (0%)
Strand=Plus/Plus
Query 234 ATGTATGACATTTGCGGACACCGCAGCGATGGAAAAGTCCTTAACTGTCCTTATGCCTCC 293
|||||||||||||| |||||||||| ||||||||||||||| |||||||||||||| |||
Sbjct 1 ATGTATGACATTTGTGGACACCGCACCGATGGAAAAGTCCTCAACTGTCCTTATGCTTCC 60
Query 294 CCTTCCATTCAGCCTGATGAACTGTTTTCTGCCAAAATCCAAAGCCTTTGCCCAACCATA 353
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTTCCATTAAGCCTGATGACCTGTTTTCTGCCAAAATCCAAAGCCTTTGCCCAACCATA 120
Query 354 AGTGGCAATGTCTGTTGTACAGAGACTCAGTTTGACACTTTGAGGTCTCAAGTTCAACAG 413
| |||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 121 ACTGGCAAAGTCTGTTGTACCGAGACTCAATTTGACACTTTGAGGTCTCAAGTTCAACAG 180
Query 414 GCTGTCCCTTTTCTTGTGGGTTGTCCTGCATGCTTACGGAACTTCTTAAATTTGTTCTGC 473
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 181 GCTGTCCCTTTTCTTGTCGGTTGTCCTGCATGCTTACGAAACTTCTTAAACTTGTTCTGC 240
Query 474 GAGCTCTCCTGTTCTCCAAATCAGTCTCTTTTCATCAACGTCACTTCTGTTGCTGAGGTG 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGCTCTCCTGTTCTCCAAATCAGTCTCTTTTCATCAACGTCACTTCTGTTGCTGAGGTG 300
Query 534 AGTGGAAATTTGACAGTGGATGGTATAGACTATCACATAACTGATACGTTTGGAGAAGGC 593
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AGTGGAAATTTGACAGTGGATGGTATAGACTATCACATAACTGATACTTTTGGAGAAGGC 360
Query 594 CTTTACGAGTCCTGTAAAGAGGTGAAATTTGGAACAATGAACACACGTGCAATTAACTTT 653
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 CTTTACGAGTCCTGTAAAGAGGTGAAATTTGGAACAATGAACACACGTGCCATTAACTTT 420
Query 654 GTTGGCGGTGGTGCTAAAAACTTCAGAGAATGGTTTACGTTTATTGGTCAGAAAGCACCA 713
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTGGCGGTGGTGCTCAAAACTTCAGAGAATGGTTTACGTTTATTGGTCAGAAAGCACCA 480
Query 714 TCTGGCTTTCCTGGTTCACCATATGCGATCAACTTCAAATCAAGCATCCCTGAGTCATCT 773
||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||
Sbjct 481 CCTGGCTTTCCTGGTTCACCGTATGCGATAAACTTCAAATCAAGCACCCCTGAGTCATCT 540
Query 774 GCGATGGTACCAATGAA-TGTATCTGTTTATTCATGTG 810
||||||||||||||||| | ||||||||||||||||||
Sbjct 541 GCGATGGTACCAATGAACT-TATCTGTTTATTCATGTG 577
Score = 671 bits (363), Expect = 0.0
Identities = 380/388 (98%), Gaps = 2/388 (1%)
Strand=Plus/Plus
Query 3624 GGCATCCAACTCAATGCAGTTTCTGTTGTGAATTTGATAATGTCAATCGGGATTGCTGTA 3683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2809 GGCATCCAACTCAATGCAGTTTCTGTTGTGAATTTGATAATGTCAATCGGGATTGCTGTA 2868
Query 3684 GAATTCTGCGTGCACATATCACATGCTTTCCTGATGAGTAGTGGGGACAGAGAACATAGA 3743
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 2869 GAATTCTGCGTGCACATATCACATGCTTTCCTGATGAGTAGTGGGAACAGAGAACAGAGA 2928
Query 3744 GCGAGGGAGGCACTGGAAACCATGGGAGCTTCAGTTTTCAGTGGGATCACACTCACAAAA 3803
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2929 GCGACAGAGGCACTGGAAACCATGGGAGCTTCAGTTTTCAGTGGGATCACACTCACAAAA 2988
Query 3804 CTTGTTGGAGTGATCGTGCTTTGCTTTGCAAGATCTGAGATATTTGTGGTGTATTACTTC 3863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2989 CTTGTTGGAGTGATCGTGCTTTGCTTTGCAAGATCTGAGATATTTGTGGTGTATTACTTC 3048
Query 3864 CAAATGTACTTGGCTTTGGTTATAATCGGCTTCTTGCATGGGCTCGTTTTCTTACCTGTC 3923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3049 CAAATGTACTTGGCTTTGGTTATAATCGGCTTCTTGCATGGGCTCGTTTTCTTACCTGTC 3108
Query 3924 ATACTGAGTTTAGCTGGCCCGCCGCAGCTGA-ACTTGGACATCGAGCAGCAGCAGACAGA 3982
||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 3109 ATACTGAGTTTAGCTGGCCCGCCGCAGCT-ACACTTGGACATCAAGCAGCAGCAGACAGA 3167
Query 3983 CGAAGCTTCCTCTTCCCTACTGAACTGA 4010
||||||||||||||||||| ||||||||
Sbjct 3168 CGAAGCTTCCTCTTCCCTATTGAACTGA 3195
Score = 377 bits (204), Expect = 3e-103
Identities = 208/210 (99%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 3141 TGCTTTCGACACTCAGATTTGGTTCAGGATCGTCCATCTACAGCTCAATTCAGGGAGAAA 3200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2506 TGCTTTCGACACTCAGATTTGGTTCAGGATCGTCCATCTACAGCTCAATTCAGGGAGAAA 2565
Query 3201 CTACCCTGGTTTCTAAATGCTTTGCCATCGGCTGACTGTGCAAAGGGTGGTCACGGGGCT 3260
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2566 CTACCCTGGTTTCTAAATGCTTTGCCATCGGCTGACTGTGCAAAAGGTGGTCACGGGGCT 2625
Query 3261 TATACGAATAGCGTGGATTTAAAAGGGTATGAGAGTGGTGTTATACAGGCATCGGAGTTC 3320
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2626 TATACGAATAGCGTGGATTTAAAAGGGTATGAGAGTGGTGTTATACAGGCATCTGAGTTC 2685
Query 3321 CGTACATACCACACTCCACTTAACACACAA 3350
||||||||||||||||||||||||||||||
Sbjct 2686 CGTACATACCACACTCCACTTAACACACAA 2715
Score = 267 bits (144), Expect = 6e-70
Identities = 148/150 (99%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 2925 ATATCAAGAGCGTCACAGGCTTCAGATACAAGTTACATTGCCAAACCAGCTGCTTCTTGG 2984
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2356 ATATCAAGAGCGTCACAGGCTCCAGATACAAGTTACATTGCCAAACCAGCTGCTTCTTGG 2415
Query 2985 CTCGATGACTTTCTTGTATGGCTATCACCAGAGGCTTTTGGCTGTTGTCGGAAGTTCACT 3044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2416 CTCGATGACTTTCTTGTATGGCTATCACCAGAGGCTTTTGGCTGTTGTCGGAAGTTCACT 2475
Query 3045 AATGGCAGTTATTGTCCTCCAGATGACCAG 3074
||||||||||||||||||||||| ||||||
Sbjct 2476 AATGGCAGTTATTGTCCTCCAGACGACCAG 2505
Score = 159 bits (86), Expect = 1e-37
Identities = 92/95 (97%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 3417 ATTGACATCTTTCCATATTCTGTCTTCTACATTTTCTTTGAGCAATATCTGAATATCTGG 3476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2716 ATTGACATCTTTCCATATTCTGTCTTCTACATTTTCTTTGAGCAATATCTGAATATCTGG 2775
Query 3477 ACAGTAGCTTTGACAAACCTTGCTATAGCAATCGG 3511
|| ||||||||||| ||||| ||||||||||||||
Sbjct 2776 ACTGTAGCTTTGACGAACCTCGCTATAGCAATCGG 2810
> Ahg913522 jgi|Araly1|913522|Al_scaffold_0001_3776
Length=3786
Score = 625 bits (338), Expect = 9e-178
Identities = 1538/2106 (73%), Gaps = 127/2106 (6%)
Strand=Plus/Plus
Query 1878 GCAGTAGCATGGGAAAAATCGTTCATTCAATTAGCAAAGGAGGAGCTGCTACCTATGGTG 1937
|||||||||||||| ||| | || || ||| | || ||||| ||| || | || |||||
Sbjct 1648 GCAGTAGCATGGGAGAAAGCCTTTATCCAACTGGCCAAGGATGAGTTGTTGCCAATGGTT 1707
Query 1938 CGATCCAAGAATTTGAGTCTGTCATTT-TCATCCGAAAGCTCAATAGAGGAAGAGCTGAA 1996
| | || ||||| | ||| || ||| || || ||||| || || || ||||| ||||
Sbjct 1708 AAAGCAAAAAATTTAACTCTTTC-TTTCTCTTCGGAAAGTTCTATTGAAGAAGAATTGAA 1766
Query 1997 AAGAGAAAGTACTGCTGATGTTATAACAATAGCTGCAAGCTAT-TTGGTTATGTTTGTTT 2055
||||||||| || || ||||| ||||| ||||| ||| ||| || || ||||||| |
Sbjct 1767 AAGAGAAAGCACAGCAGATGTCATAACTATAGCCATAAGTTATCTT-GTCATGTTTGCCT 1825
Query 2056 ACATTTCGGTCACACTTGGAGATGCTCCGCAG-TTCTATACCTTTTACATTTCATCAAAG 2114
| || || |||||||||||||| | || | | || || |||||||||| |||| |||
Sbjct 1826 ATATATCACTCACACTTGGAGATTCACCTC-GCTTAAATTCCTTTTACATAACATCCAAG 1884
Query 2115 GTTTTGCTCGGTCTTTCGGGGGTTGTGCTTGTCTTGCTTTCTGTACTTGGATCTGTTGGA 2174
||| |||| ||||| || || ||| | |||||| ||||||| || || || ||||| |||
Sbjct 1885 GTTCTGCTTGGTCTATCTGGTGTTCTACTTGTCATGCTTTCCGTCCTCGGCTCTGTAGGA 1944
Query 2175 GTTTTCAGTGCCCTT-GGAGTTAAATCCACAT-TGATCATAATGGAAGTCATTCCTTTCC 2232
||||||||||| || ||| | ||||| || | | || ||||||||||| || ||||| |
Sbjct 1945 TTTTTCAGTGCCGTTGGGA-TGAAATCGAC-TCTTATAATAATGGAAGTTATACCTTTTC 2002
Query 2233 TAGTCCTGGCTGTGGGAGTAGATAATATGTGCATACTGGTTCATGCTGTAAAGAGACAAC 2292
| || ||||||| || || ||||||||||||||||||||||||||||| ||||| |||
Sbjct 2003 TTGTTTTGGCTGTCGGTGTTGATAATATGTGCATACTGGTTCATGCTGTGAAGAGGCAAG 2062
Query 2293 CTCGTGAGGTTTCTTTAGAGCA-ACGAATTAGCTCTGCACTTGTTGAAGTAGGTCCATCC 2351
| ||| | |||| || | |||||| ||| ||| ||| | ||||| || |||||
Sbjct 2063 AGCAAGAGCTGCCTTTGGAA-AGACGAATAAGCAATGCCCTTATGGAAGTTGGACCATCG 2121
Query 2352 ATAACA-TTGGCAAGTTTATCCGAGGTCTTGGCTTTTGCTGTTGGAGCTTTTGTTCCAAT 2410
|| || ||| |||||||| ||||| | || |||||||||||||| |||||| || |||
Sbjct 2122 ATTACTCTTG-CAAGTTTAGCCGAGATTTTAGCTTTTGCTGTTGGTGCTTTTATTAAAAT 2180
Query 2411 GCCAGCATGT-CGTA-TCTTCTCCATGTTTGCAGCATTGGCTATTATGCTGGACTT-CTT 2467
|||||| ||| || | | |||||||||||||| ||||||||| | | ||||||| |||
Sbjct 2181 GCCAGC-TGTTCG-AGTGTTCTCCATGTTTGCTGCATTGGCTGTCCTTTTGGACTTTCTT 2238
Query 2468 TCTGCAAATCACCGCTTTTGTTGCGCTAATAGTTTTTGACTGCAAAAG-ATCTGCGGATA 2526
|| || || || || ||||| || | ||||||||||||| | || | | | | |||||
Sbjct 2239 -CTCCAGATTACTGCGTTTGTAGCTTTGATAGTTTTTGACTTCCAACGGA-CAGAGGATA 2296
Query 2527 ATAGGATTGATTGTTTCCCTTGCATAAA-AGTTCCTTCATCATCTCG-AGAATCTGTTGA 2584
| || ||||||| ||||| || || || | || ||||||| || ||| |
Sbjct 2297 AGCGGGTTGATTGCTTCCCATGTATTAAGACATCGAA-ATCATCTAATAGCG-CTGACAA 2354
Query 2585 AGG--T-GGA-AGGGAAC--CTGGGTTTCTTGAGA-GATACATGAAGGAGGTTCATGCAC 2637
||| | || || ||| |||| || |||| |||| |||||||| || |||||||
Sbjct 2355 AGGGGTTGGTCAGAGAAAAGCTGGCCTT-TTGACTCGATATATGAAGGAAGTCCATGCAC 2413
Query 2638 CCGTTCTTGGACTTTGGGGTGT-AAAA-AT-GGTTGTTGTCGCTGTATTCTTCG-CTTTT 2693
|||||||| | | ||||| || |||| || |||| ||| | || | ||||| | |||
Sbjct 2414 CCGTTCTTAGCCATTGGGCAGTCAAAATATTGGTTATTG-C-CT-TCTTCTTTGGCTTA- 2469
Query 2694 GC-ACTGGCAAGCATTGCCATCAGCCCAA--GGCTTGAAACTGGCTTGGAGCAGAAA-AT 2749
|| | |||| | ||||| || | ||| || |||| ||||||||||||| | | ||
Sbjct 2470 GCTA-TGGCTGGAATTGCAAT--GTCCACTCGGATTGAGCCTGGCTTGGAGCA-ACAGAT 2525
Query 2750 TGTTCTTCCTCGAGACTCCTACCTTCAAGACTATTTTGACAGTCTCTCAG-AGTACCT-C 2807
||||||||||| |||||| || ||||| | || || ||| | | ||| | || || |
Sbjct 2526 TGTTCTTCCTCAAGACTCATATCTTCAGGGTTACTTCAACAATATTTCAACA-TATCTTC 2584
Query 2808 AG-AGTGGGGCCGCCTTTGTATTTTGTTGTCAAGAATTACAATTATAGCTCGGAATCAAG 2866
| | ||| || ||||| || |||||| | |||||||| || || ||||| ||||||||
Sbjct 2585 -GTATTGGT-CCACCTTTATACTTTGTTCTGAAGAATTATAACTACAGCTCAGAATCAAG 2642
Query 2867 GCATACAAATCAG-TTGTGCTCTATCAGCCAA-TGCAATTCGAATTCCCTTTTAAATGAG 2924
|| || ||||| || || || || | | || || |||| || || ||||||||||||
Sbjct 2643 ACAGACTAATCAACTT-TGTTCCATTAAC-AAGTGTGATTCTAACTCTCTTTTAAATGAG 2700
Query 2925 ATAT-CAAGAGCGTCACAGGCTTCAGATAC-AAGTTACATTGCCAAACCAGCTGCTTCTT 2982
|| | |||| || || | || |||| || ||| ||||| || || ||||||||||| |
Sbjct 2701 AT-TGCAAGGGCTTCTTTGACTCCAGA-ACTAAGCTACATAGCTAAGCCAGCTGCTTCAT 2758
Query 2983 GGCTCGATGACTTTCTTGTATGGCTATCACCAGAGGCTTTTGGCTGTTGTCGGAAGTTCA 3042
|||| ||||||||||| || ||| |||| || ||||| ||||||||||| || ||||| |
Sbjct 2759 GGCTTGATGACTTTCTCGTGTGGTTATCTCCCGAGGCGTTTGGCTGTTGCCGAAAGTTTA 2818
Query 3043 CTAATGGCAG-TTATTGTCCTCCAGATGACCAGCCACCTTGCTGCACGGCTGAGGAAGAT 3101
| ||||| | || ||| || || ||||||||||| ||||| ||| | |||| |||
Sbjct 2819 CAAATGGTACCTT-TTGCCCCCCTGATGACCAGCCTCCTTGTTGCTCTCCTGATCAAGGC 2877
Query 3102 ATATGCAGTTTA-GATGG-GATCTGTAAAGACTGTACCACATGCTTTCGACACT-CAGAT 3158
| || | || | || | | || ||||| |||||||| ||||| || || | |||||
Sbjct 2878 AGCTGTGGCCTAAG-TGAAG-TATGCAAAGATTGTACCACGTGCTTCCGTCA-TGCAGAT 2934
Query 3159 TTG-GTTCAG-GATCGTCCATCTACAGCTCAATTCAGGGAGAAACTACCCTGGTTTCTAA 3216
|| || || || || ||||| ||| | ||||||| |||||||| || ||||| || |
Sbjct 2935 TTAAGT--AGTGACCGCCCATCCACAACCCAATTCAAAGAGAAACTTCCTTGGTTCCTCA 2992
Query 3217 ATGCT-TTGCCATCGGCTGACTGTGC-AAAGGGTGGTCACGGGGCTTATACGAATAGCGT 3274
| || || || || ||||| ||||| ||||| ||| || || |||||| | | ||| ||
Sbjct 2993 ACGCGCTT-CCTTCCGCTGATTGTGCTAAAGG-TGGACATGGTGCTTATTCTAGTAGTGT 3050
Query 3275 GGATTTAAAAGGGTATGAGAGTGGTGTTATACAGGCATCGGAGTTCCGTACATACCACAC 3334
|||||| |||| ||||| | |||| | || || || || |||||| || || |||||
Sbjct 3051 TGATTTACAAGGCTATGAAAATGGTATAATTCAAGCTTCATCGTTCCGCACTTATCACAC 3110
Query 3335 TCCACTTAACACA-CAAGG-TGACTATGTTAATGCACTGCGAGCTGCTCGGGAGTTCAGT 3392
|| ||||||| | || || ||||| ||||||| || || ||||||||| || || |||
Sbjct 3111 ACCCCTTAACA-AGCA-GGCTGACTTTGTTAATTCAATGAGAGCTGCTCAAGAATTTAGT 3168
Query 3393 TCAAGAA-TATCCAATTCCTTGAAGATTGACATCTTTCCATATTCTGTCTTCTACATTTT 3451
||| || | ||| |||||| ||||| || || | ||||||||| || || || || ||
Sbjct 3169 GCAA-AAGTTTCCCGTTCCTTAAAGATGGAGATATATCCATATTCAGTGTTTTATATGTT 3227
Query 3452 CTTTGAGCAATATCT-GA-ATATCTGGACAG-TAGCTTTGA-CAAACCT-TGCTATAGCA 3506
||||||||||||||| || |||| ||| | | || | | ||| ||| | | |||||
Sbjct 3228 CTTTGAGCAATATCTTGACATAT--GGAAAACT-GCACTAATCAA-CCTCTCC-ATAGCC 3282
Query 3507 ATCGGTGCTATATTTATTGTTTGCTGGTTAATCACTTCCAG-TGCCTGGAGTTCAGCCAT 3565
|| | ||| | ||| | || || | | ||||| | ||| | ||||| || || ||
Sbjct 3283 ATTGCTGCCGTGTTTGTCGTGTGTTTAATCATCACATGCAGCTTT-TGGAGCTCCGCAAT 3341
Query 3566 CATTGTCCTTGTGTTAGTGATGAT-ACTCGTGGATCTCATGGGTA-TGATGGTGATTCTA 3623
||| | || ||| | | ||||| | | || ||||| |||| | | |||| | |||
Sbjct 3342 TATTTTGCTGGTGATCGCAATGATCATTATTG-ATCTCTTGGG-AGTTATGGC-AGTCTT 3398
Query 3624 GGCAT--CCAACTCAATGCAGTTTCTGTTGTGAATTTGATAATGTCAATCGGG-ATTGCT 3680
||| ||| || || ||| | || ||||| ||| | || ||||| | ||| || ||
Sbjct 3399 T-CATATCCAGCTAAACGCACTATCGGTTGTAAATCTAATCATGTCCGT-GGGCATAGCG 3456
Query 3681 GTAGAATTCTGCGTGCACATATCACATGCTTTCCTGATGAGTAGTGGGGACAGAGAAC-A 3739
|| || || || ||||||||| |||| |||||| | | | |||||||||| ||| |
Sbjct 3457 GTTGAGTTTTGTGTGCACATAACACACGCTTTC-TC--GC--ACTGGGGACAGA-AACCA 3510
Query 3740 TAG-AGCGAGGGAGGCACTGGAAACCATGGGAGCTTCAGTTTTCAGTGGGATCACACTCA 3798
| | | || ||||| ||| ||||||||||||||||||||||| || ||| | |
Sbjct 3511 TCGGAT-GAAAGAGGCGTTGGGTGGGATGGGAGCTTCAGTTTTCAGTGGAATTACATTGA 3569
Query 3799 CAAAACTTGTTGGAGTGATCGTGCTTTGCTT-TGCAAGATCTGA-GATATTTGTGGTGTA 3856
| || || ||||| || || ||||| | || | ||||||| || | | |||||||| ||
Sbjct 3570 CGAAGCTAGTTGGGGTAATTGTGCTCAGTTTCT-CAAGATCAGAAG-TCTTTGTGGTCTA 3627
Query 3857 TTACTTCCAA-ATGTA-CTTGGCTTTGGTTATAATCGGCTTCTTGCATGGGCTCGT-TTT 3913
|||||| || ||||| || ||| | || | |||| |||||||| || || || |||
Sbjct 3628 CTACTTC-AAGATGTATCT-GGCACTAGTCCTCCTCGGTTTCTTGCACGGCCTTGTATTT 3685
Query 3914 CTTACC 3919
|||||
Sbjct 3686 -TTACC 3690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 157177776490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5