BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38370.1
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943798 jgi|Araly1|943798|scaffold_700027.1 1155 0.0
> Ahg943798 jgi|Araly1|943798|scaffold_700027.1
Length=720
Score = 1155 bits (625), Expect = 0.0
Identities = 681/709 (96%), Gaps = 0/709 (0%)
Strand=Plus/Plus
Query 62 AGAGAGAAAGAGATGGATTCGTCGTCAGTAGGGAACACCAACAGGTACTGGGTCCTCCGC 121
||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||
Sbjct 9 AGAGAGAGAGAGATGGATTCGTCGTTAGTAGGGAACAACAACAGGTATTGGGTCCTCCGC 68
Query 122 CACGGCAAGAGCATTCCCAACGAGAGAGGCCTCGTCGTCTCTTCCATGGAAAATGGTGTC 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 CACGGCAAGAGCATTCCCAACGAGAGAGGCCTCGTCGTCTCTTCCATGGAAAATGGTGTC 128
Query 182 CTCCCCGAGTACCAGTTAGCCCCTGATGGTGTCGCTCAGGCTCGTCTCGCCGGCGAATCG 241
|||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 129 CTCCCCGAGTACCAGTTAGCCCCTGATGGTATCACCCAGGCTCGTCTCGCCGGCGAATCG 188
Query 242 TTCCTCCAGCAACTCAAGGAAAGTAACATAGAACTGGACAAGGTTCGCATTTGCTACTCC 301
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 189 TTCCTCCAGCAACTCAAGGAAAGTAACATAGAGCTGGACAAGGTCCGCATTTGCTACTCC 248
Query 302 CCCTTCTCCAGAACCACTCACACCGCTAGGGTTGTTGCTAAGGTCCTCAATCTCCCCTTT 361
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||
Sbjct 249 CCCTTCTCCAGAACCACTCACACCGCTAGGGTTGTTGCTGAGGTCCTCAACCTCCCATTT 308
Query 362 GATGCTCCTCAATGCAAGATGATGGAAGATCTGCGCGAACGCTATTTTGGACCTACATTT 421
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 309 CATGCTCCTCAATGCAAGATGATGGAAGATCTGCGAGAACGCTATTTTGGACCTACCTTT 368
Query 422 GAACTCAAGTCCCATGACAAGTACCCAGAGATATGGGCTCTTGATGAAAAAGATCCTTTT 481
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 369 GAACTCAAGTCACATGACAAGTACCCAGAGATATGGGCTCTTGATGGAAAAGATCCTTTC 428
Query 482 ATGGGACCAGAAGGAGGTGAAAGTGCTGATGATGTTGTTTCCCGACTTGCCACTGCCATG 541
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 429 ATGAGACCACAAGGAGGTGAAAGTGCTGATGATGTTGTTTCCCGACTTGCCACTGCGATG 488
Query 542 AAATCCATGGAAGCTGAATATCAAAGGTGTGCAATTCTGGTGGTGAGTCATGGAGATCCT 601
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 489 GAATCCATGGAAGCTGAATATCAAAGGTGTGCAATTTTGGTGGTGAGTCATGGAGATCCT 548
Query 602 CTGCAGATGTTGCAGAACGTTTTCCATTCAGCAAAGCAACAGGAAGGAGATGGTTTGGCA 661
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 549 CTGCAGATGTTGCAGAACGTTTTCCATTCAGCAAAGCTACAGGAAGGAGATGGTTTGGCA 608
Query 662 GAGAAGTTTCAGTTGAGCAGAGTTGCTTCTGTCTTGTCACAGCACCGCAAGTTTGCTTTG 721
|||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 609 GAGAGGTTTCAGATGAGCAGAGTTGCTTCCGTCTTGTCACAACACCGCAAGTTTGCTTTG 668
Query 722 CTCACTGGGGAACTCCGACCCCTCATCTGATTGGCAATCAATGTATTCA 770
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CTCACTGGGGAACTCCGACCCCTCATCTGATTGGCAATCAATGTATTCA 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35492435727
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5