BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38390.1
Length=1922
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490601 jgi|Araly1|490601|fgenesh2_kg.7__34__AT4G38390.1 2835 0.0
> Ahg490601 jgi|Araly1|490601|fgenesh2_kg.7__34__AT4G38390.1
Length=1846
Score = 2835 bits (1535), Expect = 0.0
Identities = 1748/1850 (94%), Gaps = 17/1850 (1%)
Strand=Plus/Plus
Query 86 tttgttcatagtttCTCGGCAACCAACTTCTCCTCTGCCTTAACGTCATCGAGAAATGGC 145
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTGTCCATAGTTTCTCGGCAACCAACTTCTCCTCTGCCTTAACGTCATCGAGAAATGGC 60
Query 146 Gtcttcttcctcttcct---cctcctccttttgcactctctccttcccatttctcttgtt 202
||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCGTCTTCTTCTTCCTCCGCCTCCTCCTTTTGCACTCTCTCCTTCCCATTTCTCTTGTT 120
Query 203 ttcttcctattctttGTAGCCTATCCTCCTTGCtt--tttttGTGTCTG-CGTTATACAA 259
||||||||||||||||||||||||| ||| | ||| || | | || | |||| |||||
Sbjct 121 TTCTTCCTATTCTTTGTAGCCTATCGTCC-TCCTTCCTTCAT-TATC-GTCGTTCTACAA 177
Query 260 CTCATTAATGGCCTCTTTGAAGTTGAAGAAAAGGGATAATGGCGCTGAACCCGACAAGAA 319
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TTAATTAATGGCCTCTTTGAAGTTGAAGAAAAGGGATAATGGCGCTGAACCCGACAAGAA 237
Query 320 AAAGCTGGTCATCGCCGGTATTCGCCACCAGTTACTCCTTCTCCTTCGCCGCCGTCACCG 379
|||| |||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 238 AAAGTTGGTCATCGCAGGAATTCGCCACCAGTTACTGCTTCTCCTTCGCCGCCGTCACCG 297
Query 380 TCTATTTCCGCTGGTATCTGCCGTCTCCGGCTGtctcctcctcatcctcttctcattctc 439
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 298 TCTATTTCCGCTGGTATCTGCCGTCTCCGGCTGTATCCTCCTCATCCTCTTCTCATTCTC 357
Query 440 caccctctctcctcctccATTGATCCATCATAACAATCAAGTGGCCGTCGAACCCAATCC 499
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 358 GGCCCTTTCTCCTCCTCCATTGATCCATCACAACAATCAAGTGGCCGTGGAACCCAATCC 417
Query 500 A-A-CC-A-CTCCATTTCGTGTACCCGAAAATGGCGGAAGGTCGGATCGCCAGTTATGGA 555
| | || | | ||| | | | | | |||||||| |||||||||||||||||||||||||
Sbjct 418 AGATCCAACCACCACTCCAT-TTCGTGAAAATGGTGGAAGGTCGGATCGCCAGTTATGGA 476
Query 556 GCTCGAGATTGTCCAACTTGTACTATGCCTGCAGTAATGCAACTGACACCTTTCAAGTTA 615
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 477 GCTCGAGATTGTCCAACTTCTACTATGCCTGCAGCAATGCAACTGACACCTTTCAAGTTA 536
Query 616 CGGATACGAGAAGCCAAACCAATCGGTATTTACTGATCGCAACAAGCGGAGGGTTAAACC 675
| |||| || ||| |||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 537 CTGATAAGACAAGGCAAACCAATCGGTATTTACTTATCGCGACAAGCGGAGGTTTAAACC 596
Query 676 AACAGCGGACAGGGATAATAGATGCTGTAGTAGCGGCATACATTCTAAACGCCACTCTTG 735
| || ||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 597 AGCAACGGACAGGGATCATAGATGCTGTAGTTGCCGCATACATTCTAAACGCCACTCTTG 656
Query 736 TGGTCCCTAAACTTGACCAGAAGTCGTACTGGAAGGACACCAGCAACTTTGAGGATATAT 795
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 657 TGGTCCCTAAACTTGACCAGAAGTCCTACTGGAAGGACACCAGCAACTTTGAGGATATAT 716
Query 796 TTGATGTTGATTGGTTCATATCGCATCTCTCCAAAGACGTGAAGATCATCAAGGAGCTTC 855
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 717 TTGATGTTGATTGGTTCATTTCGCATCTCTCCAAAGACGTCAAGATCATCAAGGAGCTTC 776
Query 856 CTAAAGAAGAGCAGTCAAGAATATCCACCAGCCTACAGTCAATGCGTGTCCCAAGGAAGT 915
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 777 CTAAAGAAGAGCAGTCAAGAATATCCACCAGCCTACAGTCAATGCGTGTCCCAAGGAAAT 836
Query 916 GCACGCCTTCTTGCTACTTGCAGCGTGTTTTGCCCATTCTTACTAAGAAACATGTTGTAC 975
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 837 GCACACCTTCTTGCTACTTGCAGCGTGTTTTGCCCATTCTTAATAAGAAACATGTTGTAC 896
Query 976 AACTCTCCAAATTCGATTACAGGCTGTCCAACGCTCTTGATACAGAGCTCCAGAAACTGC 1035
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 897 AACTCTCCAAATTCGATTACAGGCTGTCCAACAATCTTGATACAGAGCTCCAGAAACTGC 956
Query 1036 GTTGTAGAGTCAACTACCATGCCGTCAGGTATACAGAGTCTATCAACAGGATGGGCCAAT 1095
|||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 957 GTTGTAGAGTGAACTACCATGCGGTGAGATATACAGAGTCTATCAACAGGATGGGCCAAT 1016
Query 1096 TGTTGGTTGACCGGATGAGAAAAAAGGCCAAACATTTTGTTGCCCTTCATCTCAGATTCG 1155
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||
Sbjct 1017 TGTTGGTTGACCGGATGAGAAAAAAGGCCAAATATTTCGTTGCCCTTCATCTCAGGTTCG 1076
Query 1156 AACCTGATATGCTGGCCTTCTCCGGATGCTATTACGGCGGTGGTCAAAAGGAGAGACTCG 1215
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1077 AACCTGATATGCTGGCCTTCTCCGGGTGCTATTACGGCGGTGGTCAAAAAGAGAGACTCG 1136
Query 1216 AACTCGGAGCTATGAGAAGAAGGTGGAAAACGTTACATGCGGCAAACCCTGAAAAGGTAC 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AACTCGGAGCTATGAGAAGAAGGTGGAAAACGTTACATGCGGCAAACCCTGAAAAGGTAC 1196
Query 1276 GGCGGCACGGGAGATGTCCCCTGACGCCAGAGGAGATTGGTCTGATGCTCAGAGGCTTAG 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GGCGGCACGGGAGATGTCCCCTGACGCCAGAGGAGATTGGTCTGATGCTCAGAGGCTTAG 1256
Query 1336 GTTTTGGGAAAGAGGTTCACTTGTACGTTGCATCAGGCGAGGTATACGGAGGGGAGGATA 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1257 GTTTTGGGAAAGAGGTTCACTTGTACGTTGCATCAGGCGAGGTATACGGAGGGGAGGTTA 1316
Query 1396 CATTGGCACCTTTAAGAGCTCTGTTTCCGAATCTTCATACAAAAGAGACACTGACCTCCA 1455
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1317 CATTGGCACCGTTAAGAGCTCTGTTTCCAAATCTCCATACAAAAGAGACACTGACCTCCA 1376
Query 1456 AGAAAGAACTGGCTCCGTTTGCAAACTTCTCATCACGCATGGCTGCTCTTGACTTCATTG 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AGAAAGAACTGGCTCCGTTTGCAAACTTCTCATCACGCATGGCTGCTCTTGACTTCATTG 1436
Query 1516 TCTGTGATAAGAGCGACGCATTTGTCACAAACAACAACGGCAACATGGCTCGAATCTTAG 1575
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1437 TCTGTGATAAGAGCGACGCATTTGTCACCAACAACAACGGCAACATGGCTAGAATCTTAG 1496
Query 1576 CTGGGAGAAGGAGATACTTGGGACACAAAGTAACCATCCGTCCAAACGCCAAGAAACTCT 1635
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1497 CTGGGAGAAGGAGATACTTGGGGCACAAAGTGACCATCCGTCCAAACGCCAAGAAACTCT 1556
Query 1636 ACGAAATCTTCAAAAATAGACACAACATGACATGGGGTGAGTTCTCATCGAAGGTCAGAA 1695
|||| |||||||||||||||||||||||||||||| ||| |||||||| |||||| |||
Sbjct 1557 ACGAGCTCTTCAAAAATAGACACAACATGACATGGGATGATTTCTCATCCAAGGTCCGAA 1616
Query 1696 GATACCAGACGGGTTTCATGGGGGAGCCAGATGAAATGAAACCAGGAGAGGGGGAGTTCC 1755
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1617 GATACCAGACGGGTTTCATGGGGGAACCAGATGAAATGAAACCAGGAGAGGGCGAGTTCC 1676
Query 1756 ATGAGAACCCAGCCTCCTGCATTTGTCGAACCTCTGAAGCAAGAGTC---AAAGAAAAAG 1812
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1677 ATGAGAACCCAGCCTCCTGCATTTGTCGAACCTCTGAAGCAAGAGTCGTGAAAAAAAAAG 1736
Query 1813 CAAAACATGTAAATGAAGATGACTCATCGGAGTACTCAGAGATTGGTAATGTCCCCATAT 1872
|||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1737 CAAAACATGTAAATGAGGATGACTCATCGGAGTACTCAGACATTGGCAATGTCCCCATAG 1796
Query 1873 CCAGTAGAAGCGATTTGGATCACTCACAATTTGATGAAGTGATCTTCTGA 1922
| ||| ||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1797 CTAGTGGAAGCGATTTGGATCACTCACAAGTTGATGAAGAGATCTTCTGA 1846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72219104520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5