BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38400.1
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490602 jgi|Araly1|490602|fgenesh2_kg.7__35__AT4G38400.1 1382 0.0
Ahg484976 jgi|Araly1|484976|fgenesh2_kg.5__968__AT3G45970.1 833 0.0
> Ahg490602 jgi|Araly1|490602|fgenesh2_kg.7__35__AT4G38400.1
Length=991
Score = 1382 bits (748), Expect = 0.0
Identities = 848/896 (95%), Gaps = 8/896 (1%)
Strand=Plus/Plus
Query 83 AAGGCTTTCTCTTCCTCCTCTCAGTCGTAC-TCCTCTTCTCCTCATCTGCAGCCGCCTGC 141
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 5 AAGGCTTTCTCTTCCTCCTCTCAGTCGT-CTTCCTCTTCTCCTCATCTGCAGCCGCCTGC 63
Query 142 GACCGATGTCTTCACAGTTCTAAGGCAGCTTATTTCTCCTCTGCATCTGCTCTCTCCTCT 201
||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 64 GACCGATGTCTTCACCGTTCTAAGGCTGCTTATTTCTCCTCTGCCTCTGCTCTCTCCTCC 123
Query 202 GGAGCTTGTGCATATGGCTCTATGGCTACCGGTTTCTTCGCCGGACACATTGCTGCGGCT 261
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 124 GGAGCTTGTGCCTATGGCTCTATGGCTACGGGTTTCTTCGCCGGACACATTGCCGCGGCT 183
Query 262 CTGCCTTCCATCTACAAAGACGGCTCCGGCTGCGGAGCTTGCTTCCAGGTCAGATGCAAG 321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 184 CTGCCTTCCATCTACAAAGACGGCTCCGGCTGCGGAGCTTGCTTCCAGGTCAGATGTACG 243
Query 322 AACCCGACGCTTTGCAGCAGCAAAGGAACCACGGTGATTG-TCACAGACTTGAACAAGAC 380
|||||||| |||||||||||||||||||| ||||||| || |||||||| |||||||||
Sbjct 244 AACCCGACCCTTTGCAGCAGCAAAGGAACAACGGTGA-TGCTCACAGACCTGAACAAGAG 302
Query 381 CAACCAAACCGATCTTGTCCTTAGCAGCAGAGCCTTTAGGGCCATGGCTAAGCCTGTTGT 440
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CAACCAAACCGATCTTATCCTTAGCAGCAGAGCCTTTAGGGCCATGGCTAAGCCTGTTGT 362
Query 441 TGGCGCCGACAGAGATCTTCTCAAACAAGGCATTGTCGATATTGAATACAGGAGAGTTCC 500
|||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 363 TGGCTCCGACAGAGATCTTCTCAAACAAGGCCTTGTCGACATTGAATACAGGAGAGTTCC 422
Query 501 TTGCGATTACGGTAACAAGAAGATGAACGTGAGAGTTGAAGAATCAAGCAAAAATCCAAA 560
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 423 TTGCGATTACGGGAACAAGAAGATGAACGTGAGAGTTGAAGAATCAAGCATAAATCCAAA 482
Query 561 CTACTTGGCGATAAAGCTCTTGTACCAAGGAGGCCAAACTGAAGTGGTAGCCATTTACAT 620
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 483 CTACTTGGCGATAAAGCTCTTGTACCAAGGAGGCCAAACCGAAGTGGTAGCCATTGACAT 542
Query 621 TGCTCAGGTTGGTTCGTCACATTGGAGTTACATGACCAGAAGCCACGGAGCCGTGTGGGT 680
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TGCTCACGTTGGTTCGTCACATTGGAGTTACATGACCAGAAGCCACGGAGCCGTGTGGGT 602
Query 681 TACTGACAAAGTACCCAA-CGGAGCTCTGCAGTTCAGGTTCGTGGTGACCGCAGGCTACG 739
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TACTGACAAAGTA-CCAACCGGAGCTCTGCAGTTCAGGTTCGTGGTGACCGCAGGCTACG 661
Query 740 ACGGCAAAATGGTCTGGTCGCAGAGGGTCCTTCCAGCTAACTGGGAAGCTGGAAAGTCCT 799
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 662 ACGGCAAAATGGTCTGGTCGCAGAGGGTCCTTCCCGCTAACTGGGAAGCTGGGAAGACCT 721
Query 800 ATGACGCCGGCGTTCAGATCACAGACATTGCTCAGGAAGGTTGTGATCCATGCGACGATC 859
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 722 ATGACGCCGGCGTTCAGATCACCGACATTGCTCAGGAAGGTTGTGATCCATGCGACGATC 781
Query 860 ACATCTGGAACTGAGTCTCTCTG-CTTTCCTTCTAATGTGTAAGTAACAGACTTGTTTAT 918
|||||||||||||| || ||| || || | || ||| ||| |||||||||||||||||
Sbjct 782 ACATCTGGAACTGACTCACTCCAACTCTC-TACTTATGCGTACGTAACAGACTTGTTTAT 840
Query 919 TAGATGAGAGGAAGAATCAACGGGAATGCATAATCTGACGATTTCATAAGAATGAA 974
| || |||||||||||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct 841 TTGACGAGAGGAAGAATAAACGGGAATGCATTATCTGACGATTCCATAAGAATGAA 896
> Ahg484976 jgi|Araly1|484976|fgenesh2_kg.5__968__AT3G45970.1
Length=929
Score = 833 bits (451), Expect = 0.0
Identities = 685/797 (86%), Gaps = 19/797 (2%)
Strand=Plus/Plus
Query 86 GCTTTCTCTTCCTCCTC-TCAGTCGTAC-TCCTCTTCTCCTCATCTG-CAGCCGCCTGCG 142
||||||||| |||| || | |||| | | |||||||||| ||||||| | ||| || |
Sbjct 75 GCTTTCTCTACCTCATCGT-AGTCAT-CTTCCTCTTCTCATCATCTGTTA-ACGCTTGTG 131
Query 143 ACCGATGTCTTCACAGTTCTAAGGCAGCTTATTTCTCCTCTGCATCTGCTCTCTCCTCTG 202
| |||||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 132 ATCGATGTCTTCACCGTTCTAAAGCAGCTTATTTCTCCTCTGCTTCTGCTCTCTCTTCTG 191
Query 203 GAGCTTGTGCATATGGCTCTATGGCTACCG-GTTTCTTCGCCGGACACATTGCTGCGGCT 261
|||||||||| |||||||||||||||| || ||||||||||||||||||| || || |||
Sbjct 192 GAGCTTGTGCTTATGGCTCTATGGCTA-CGAGTTTCTTCGCCGGACACATAGCCGCAGCT 250
Query 262 CTGCCTTCCATCTACAAAGACGGCTCCGGCTGCGGAGCTTGCTTCCAGGTCAGATGCAAG 321
| ||||| ||||||||||||||| | || || ||||||||||| || ||||||||||||
Sbjct 251 ATACCTTCGATCTACAAAGACGGCGCTGGTTGTGGAGCTTGCTTTCAAGTCAGATGCAAG 310
Query 322 AACCCGACGCTTTGCAGCAGCAAAGGAACCACGGTGATTG-TCACAGACTTGAACAAGAC 380
||||| | ||| || |||||||||||||||| |||| || ||||||||||||||||||
Sbjct 311 AACCCTAAGCTGTGTAGCAGCAAAGGAACCATTGTGA-TGATCACAGACTTGAACAAGAG 369
Query 381 CAACCAAACCGATCTTGTCCTTAGCAGCAGAGCCTTTAGGGCCATGGCTAAGCCTGTTGT 440
|||||||||||||||||||||||| |||||||| ||||| || |||||||| ||||||||
Sbjct 370 CAACCAAACCGATCTTGTCCTTAGTAGCAGAGCATTTAGAGCTATGGCTAAACCTGTTGT 429
Query 441 TGGCGCCGACAGAGATCTTCTCAAACAAGGCATTGTCGATATTGAATAC-AGGAGAGTTC 499
||| || |||| |||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 430 TGGTGCTGACAAAGATCTTCTCAAACAAGGCATTGTCGATATCGAATACCAA-AGAGTTC 488
Query 500 CTTGCGATTACGGTAACAAGAAGATGAACGTGAGAGTTGAAGAATCAAGCAAAAATCCAA 559
||||||||||||| |||||||| | ||||||||||| |||||| |||||||||| |||
Sbjct 489 CTTGCGATTACGGGAACAAGAACCTAAACGTGAGAGTCGAAGAAGCAAGCAAAAAGCCAT 548
Query 560 ACTACTTGGCGATAAAGCTCTTGTACCAAGGAGGCCAAACTGAAGTGGTAGCCATTTACA 619
||||||| | ||||||||| || ||||||||||| ||||| ||||| ||| | || |||
Sbjct 549 ACTACTTAGAGATAAAGCTTTTATACCAAGGAGGACAAACCGAAGTAGTATCAATCGACA 608
Query 620 TTGCTCAGGTTGGTTCGTCAC-A--TTGGAGTTACATGACCAGAAGCCACGGAGCCGTGT 676
|||||||||| ||||| || | | |||| ||||||||||||||||||||||||| || |
Sbjct 609 TTGCTCAGGTCGGTTCATCGCCAAATTGGGGTTACATGACCAGAAGCCACGGAGCTGTAT 668
Query 677 GGGTTACTGACAAAGTACCCAAC-GGAGCTCTGCAGTTCAGGTTCGTGGTGACCG-CAGG 734
||| |||||||||||||| ||| || ||||| |||||||| ||| | || |||| | ||
Sbjct 669 GGGCGACTGACAAAGTACC-AACCGGCGCTCTTCAGTTCAGATTCATAGTAACCGGC-GG 726
Query 735 CTACGACGGCAAAATGGTCTGGTCGCAGAGGGTCCTTCCAGCTAACTGGGAAGCTGGAAA 794
||||||||| |||||| | ||||| ||||| || |||||| | || ||||||||||| ||
Sbjct 727 CTACGACGGTAAAATGATTTGGTCACAGAGTGTTCTTCCATCCAATTGGGAAGCTGGGAA 786
Query 795 GTCCTATGACGCCGGCGTTCAGATCACAGACATTGCTCAGGAAGGTTGTGATCCATGCGA 854
| | || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 787 GACTTACGACGCCGGCGTTCAAATCACAGACATTGCTCAAGAAGGTTGTGATCCATGCGA 846
Query 855 CGATCACATCTGGAACT 871
| ||||||||||||||
Sbjct 847 TGCTCACATCTGGAACT 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41172750360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5