BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38410.1
Length=692
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490603 jgi|Araly1|490603|fgenesh2_kg.7__36__AT4G38410.1 894 0.0
> Ahg490603 jgi|Araly1|490603|fgenesh2_kg.7__36__AT4G38410.1
Length=621
Score = 894 bits (484), Expect = 0.0
Identities = 537/562 (96%), Gaps = 5/562 (1%)
Strand=Plus/Plus
Query 44 AAAAGTGAGTCTTGAATACCTTGTTTGCGTTTTTCCTAAAAGATGGCGGATCATCCTCGT 103
|||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 24 AAAAGTGAGTCTTGAATA-CTAGTTTGCG-TTTTCCTAAAAGATGGCGGATCATCCTCGT 81
Query 104 TCTACTGAGCAGCAAGAAGCTGATGCTGCAGCTTCCAAAGGCTGTGGGATGTTTGACTTT 163
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 82 TCTAGTGAGCAGCAAGAAGCTGATGTTGCAGCTTCCAAAGGCTGTGGGATGTTTGACTTT 141
Query 164 CTCAAGAAGAAACCCGAAGATGTACATTCTTCCGAGAATGCCCGTGTAACCAAGGAGCCC 223
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 142 CTCAAGAAGAAACCCGAAGATGTACATTCTTCCGAGAATGCCGGTGTAACCAAGGAGCCC 201
Query 224 AAGGAAGAGGAGAAGCCTTCTCTCGCTGAAAGATTCCACCTTTCTGACAGCTCTTCAAGT 283
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 202 AAGGAAGAGGAGAAGCCTTCTCTCGCTGAAAGACTCCACCTTTCTGACAGCTCTTCAAGT 261
Query 284 GATGAGGAAGCGGGTGAAAATGGGgaaaagaaggagaagaagaagaagaa---gaagaag 340
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 262 GATGAGGAAGCGGGTGAAAATGGGGAAAAGAAGGAGAAGGAGAAGAAGAACAAGAAGAAG 321
Query 341 aaTGAAGTTGCTGAAGATCAATGTGAAACAGAGGAGAAGATTCCTGCGGGTATAGGCCAT 400
|| ||||||| || || |||||||||||||||||||||| |||||||||||| ||| |||
Sbjct 322 AAGGAAGTTGTTGCAGCTCAATGTGAAACAGAGGAGAAGCTTCCTGCGGGTAGAGGTCAT 381
Query 401 GAGGATGGGAAGGAGAAAGGGTTTATGGAGAAGATAAAGGATAAGCTTCCCGGAGGTCAC 460
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 382 GAGGATGGGAAGGAGAAAGGGTTTATGGAGAAGATGAAGGATAAGCTTCCCGGAGGTCAC 441
Query 461 AATGGAAAGCCTGAAGCTGAACCTCATAATGACAAGGCCAAGGAGAAAGGGTTTATGGAA 520
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 442 CATGGAAAGCCTGAAGCTGAACCTCATAATGACAAGGGCAAGGAGAAAGGGTTTATGGAG 501
Query 521 AAGATCAAAGAGAAGCTTCCTGGTCATACCAATGATGAGAAGAAGAAGGAAACCTAGTTA 580
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 502 AAGATCAAAGAGAAGCTTCCCGGTCATACCAATGATGAGAAGAAGAAGGAAACGTAGTTA 561
Query 581 TAAGAAGACCCttttttttttt 602
|| |||||||||||||||||||
Sbjct 562 TAGGAAGACCCTTTTTTTTTTT 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25427985639
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5