BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38470.1
Length=1858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327803 jgi|Araly1|327803|fgenesh1_pm.C_scaffold_7000030 2662 0.0
> Ahg327803 jgi|Araly1|327803|fgenesh1_pm.C_scaffold_7000030
Length=1698
Score = 2662 bits (1441), Expect = 0.0
Identities = 1627/1714 (95%), Gaps = 23/1714 (1%)
Strand=Plus/Plus
Query 16 AACGAGAGTTGCGCTAGTAGAGTTATTTTCGACGCCTTACCTACCTCCCAGGCCACTATG 75
||||||||||||||||||||| |||||||||||||| | || | ||| ||||||| |||
Sbjct 7 AACGAGAGTTGCGCTAGTAGACTTATTTTCGACGCC-T-CCCA-GTCCAAGGCCACGATG 63
Query 76 GACCGCCGTGAGCGCATCAAAATGGAGGTCTTCGATGAGGTTCTCCGCCGTCTCCGTCAA 135
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 64 GACCGCCGCGAGCGCATCAAAATGGAGGTCTTCGACGAGGTTCTCCGCCGTCTCCGGCAA 123
Query 136 TCGGACATTGAAGACGCCCATCTCCCTGGTTTCGAAGACGACCTCTGGAATCACTTCAAT 195
|| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 124 TCCGACATCCAAGACGCCCATCTCCCTGGTTTCGAAGACGACCTCTGGACTCACTTCAAT 183
Query 196 CGCCTCCCTGCCAGGTATGCTTTGGATGTGAATGTGGAGAGGGCTGAAGACGTCTTGATG 255
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 184 CGCCTCCCTGCCAGGTATGCGTTGGATGTGAATGTCGAGAGGGCCGAAGACGTCTTGATG 243
Query 256 CACAAGCGATTGCTGCATTCTGCTTACGATCCCC-AGAATCGGCCTGCTATCGAAGTTCA 314
|||||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||
Sbjct 244 CACAAGCGATTGCTGCATTCTGCTTACGATCCCCAAG-CTCGGCCTGCCATCGATGTTCA 302
Query 315 TCTCGTCCAGGTTCAACCTGCCGGGATCTCTGCTGACTTGGACTCTACTTCTAATGATGC 374
|||||||||||||||||||||| || || | | | ||| ||||||||||
Sbjct 303 TCTCGTCCAGGTTCAACCTGCC--GA------CT--C-T---C-CTA---CTAATGATGC 344
Query 375 TGGTCATTCTTCTCCTACCCGAAAAAGCATTCATCCGCCGCCTGCCTTTGGTTCATCCCC 434
|| || ||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct 345 TGCTCTTTCTTCTCCTACCCGCAAAAGCATTCACCCGTCGCCTGCCTTTGGTTCATCCCC 404
Query 435 TAATCTTGAAGCACTTGCACTTGCAGCTAGTTTATCCCAAGACGAGGATGCAGACAACTC 494
|||||||||||||||||| ||||||||| | | ||||||||| | |||| |||||||||
Sbjct 405 TAATCTTGAAGCACTTGCTCTTGCAGCTTCTATCTCCCAAGACCACGATGGAGACAACTC 464
Query 495 TGTTCATAACAATTCACTCTATTCACGGCCCTTGCATGAGATAACCTTTTCCACAGAAGA 554
||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 465 CGTTCATAACAATTCACTCTATTCACGGCCCTTGCATGAGATCACTTTTTCCACACAAGA 524
Query 555 CAAGCCTAAACTCCTTTTTCAGTTAACTGCCTTGCTTGCTGAGCTTGGGCTGAACATTCA 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 CAAGCCTAAACTCCTTTTTCAGTTAACTGCCTTGCTTGCTGAGCTTGGGCTGAACATTCA 584
Query 615 AGAGGCACATGCTTTCTCTACAACTGATGGCTACTCACTAGATGTTTTTGTTGTTGATGG 674
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 AGAGGCGCATGCTTTCTCTACAACTGATGGCTACTCACTAGATGTTTTTGTTGTTGATGG 644
Query 675 CTGGCCGTACGAGGAAACAGAGAGACTTAGGATATCATTGGAGAAAGAAGCAGCAAAGAT 734
||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| |
Sbjct 645 CTGGCCGTACGAGGAAACAGACAGGCTTAGAATATCATTGGAGAAAGAAGCAGCAAAGCT 704
Query 735 CGAGTTGCAGAGCCAAAGCTGGCCTATGCAGCAATCCTTCTCTCCGGAAAAGGAAAATGG 794
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 705 CGAGTTGCAGAGCCAAAGCTGGCCTATGCAGCAATCCTTCTCTCCTGAAAAGGAAAATGG 764
Query 795 GCAAACAGGTGCCAGAACGCATGTTCCAATACCCAATGACGGAACTGATGTTTGGGAAAT 854
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 765 GCAAACAGGTGCCAGAACTCATGTTCCAATACCCAATGATGGAACTGATGTTTGGGAAAT 824
Query 855 CAACCTTAAACACCTAAAATTTGGGCATAAAATAGCGTCTGGTTCTTATGGAGATCTGTA 914
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 825 CAACCTTAAACACTTAAAATTTGGGCATAAAATAGCATCTGGTTCTTATGGAGATCTGTA 884
Query 915 TAAAGGTACATACTGTAGCCAGGAAGTTGCTATCAAAGTCCTAAAGCCAGAGCGTCTAGA 974
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 885 TAAAGGTACATATTGTAGCCAGGAAGTTGCTATCAAAGTCCTCAAGCCAGAGCGTCTAGA 944
Query 975 CTCAGATCTAGAGAAAGAGTTTGCCCAAGAAGTCTTTATTATGAGGAAAGTTAGACACAA 1034
||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 945 TTCAGAGCTAGAGAAAGAGTTTGCCCAAGAAGTGTTTATTATGAGGAAAGTTCGACACAA 1004
Query 1035 AAATGTTGTTCAGTTCATTGGTGCTTGCACCAAGCCTCCACATCTGTGTATCGTTACAGA 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 AAATGTTGTTCAGTTCATTGGTGCTTGCACCAAGCCTCCACATCTGTGTATCGTTACAGA 1064
Query 1095 ATTCATGCCCGGTGGAAGTGTATATGACTATCTACACAAGCAAAAGGGCGTCTTTAAGCT 1154
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1065 ATTCATGCCCGGTGGAAGTGTATATGACTATCTACACAAGCAAAAAGGCGTCTTTAAGCT 1124
Query 1155 TCCAACTTTGTTTAAAGTAGCTATAGATATTTGCAAAGGGATGAGCTACTTACACCAAAA 1214
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TCCAACATTGTTTAAAGTAGCTATAGATATTTGCAAAGGGATGAGCTACTTACACCAAAA 1184
Query 1215 TAACATAATTCACAGAGATTTGAAGGCTGCCAACCTCTTAATGGACGAAAATGAGGTGGT 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TAACATAATTCACAGAGATTTGAAGGCTGCCAACCTCTTAATGGACGAAAATGAGGTGGT 1244
Query 1275 TAAGGTTGCAGACTTTGGGGTGGCTAGAGTGAAAGCACAAACTGGAGTTATGACAGCTGA 1334
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1245 TAAGGTTGCAGACTTTGGGGTGGCCAGAGTGAAAGCACAAACTGGAGTTATGACAGCTGA 1304
Query 1335 AACTGGAACATATCGCTGGATGGCTCCAGAGGTGATAGAACACAAGCCATATGATCACAA 1394
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1305 AACTGGAACATATCGCTGGATGGCTCCAGAGGTAATAGAACACAAGCCATATGATCACAA 1364
Query 1395 GGCTGACGTATTCAGCTACGGGATTGTGCTATGGGAGTTGTTGACTGGGAAGCTTCCATA 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 GGCTGACGTATTCAGCTACGGGATTGTGCTATGGGAGTTGTTGACTGGGAAGCTTCCATA 1424
Query 1455 TGAATACATGACGCCGTTGCAGGCAGCAGTAGGGGTTGTCCAAAAGGGATTAAGGCCAAC 1514
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1425 TGAATACATGACGCCATTGCAGGCAGCAGTAGGGGTTGTCCAAAAGGGATTACGGCCTAC 1484
Query 1515 AATACCAAAGAACACGCATCCGAAATTGGCAGAGCTATTGGAGAGATTGTGGGAGCATGA 1574
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1485 AATACCAAAGAACACGCATCCAAAATTGGCAGAGCTATTGGAGAGATTGTGGGAGCAGGA 1544
Query 1575 TTCGACGCAGAGACCAGACTTCTCAGAGATCATAGAGCAGCTTCAAGAGATAGCCAAGGA 1634
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1545 TTCGACGCAGAGACCAGACTTCTCAGAGATCATAGAGCAGCTGCAAGAGATAGCCAAGGA 1604
Query 1635 GGTAGGAGAAGAGGGAGAGGAGAAGAAAAAGTCGTCAACAGGACTAGGAGGGGGTATATT 1694
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1605 GGTAGGAGAAGAAGGAGAGGAGAAGAAAAAATCGTCAACAGGACTAGGAGGGGGTATCTT 1664
Query 1695 TGCAGCCCTGAGGAGAAGCACCACACATCATTGA 1728
||||||||||||||||||||||||||||||||||
Sbjct 1665 TGCAGCCCTGAGGAGAAGCACCACACATCATTGA 1698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69781328840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5