BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38480.1
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490608 jgi|Araly1|490608|fgenesh2_kg.7__41__AT4G38480.1 2087 0.0
> Ahg490608 jgi|Araly1|490608|fgenesh2_kg.7__41__AT4G38480.1
Length=1427
Score = 2087 bits (1130), Expect = 0.0
Identities = 1291/1369 (94%), Gaps = 10/1369 (1%)
Strand=Plus/Plus
Query 24 CTCGATCTGGTGGGGACGATGAGTGGAAGGCCGGCGAAAAGGCCGAGGACCGACCATTCC 83
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1 CTCGATCTGGTGGGGACGATGAGTGGACGGCCGGCGAAAAGGCCGAGGATCGACCATTCC 60
Query 84 GTCGTGAATGTCTGGGAAAGGGAGCTGGGTCTCTTACCCAATCGCAGTTTCTCAAACCGT 143
|| ||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||
Sbjct 61 GTGGTGAATGTCTGGGAAAGGGAGGTCGGTCTCTTGCCCAATCGCAGTTTCTCCAACCGT 120
Query 144 TTTTCAGCATCCGAGGATCTATTGCGGCGTCTTGGACTTGACAAGAAGCTTGATAAGCAT 203
|||||||| ||||||||||||||||| ||||| |||||| |||||||||| || ||||||
Sbjct 121 TTTTCAGCCTCCGAGGATCTATTGCGCCGTCTCGGACTTCACAAGAAGCTCGACAAGCAT 180
Query 204 AAGGGATGTGTAAACACAGTGAGTTTCAATGCTGATGGAGATATCTTGCTTTCTGGTTCT 263
||||| ||||||||| |||| ||||||||||| ||||||||| ||||||| |||| ||||
Sbjct 181 AAGGGTTGTGTAAACTCAGTCAGTTTCAATGCAGATGGAGATCTCTTGCTCTCTGCTTCT 240
Query 264 GATGACAGACAAGTTATTCTTTGGGATTGGCAGACTGCTTCTGTCAAACTCTCCTTCGAT 323
|| |||| |||||||||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 241 GACGACAAACAAGTTATTCTTTGGGACTGGGAGACTGCTTCTGTCAAACTCTCTTTCGAT 300
Query 324 TCCGGCCACTTCAATAATAT-TTTCCAAGCCAAATTTATGCCTTTCTCTGACGATCGTAC 382
|||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 301 TCCGGCCACTTCAATAATGTATTT-CAAGCCAAATTTATGCCTTTCTCTGACGATCGTAG 359
Query 383 CATTGTCACATCTGCTGCTGATAAGCAGGTCCGCTATTCCAAGATTCTTGAATCTGGACA 442
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 CATAGTCACATCTGCTGCTGATAAGCAGGTCCGCTATTCCAAAATTCTTGAATCTGGACA 419
Query 443 GGTAGAGACTTCTTTGTTGGGTAAGCATCAAGGACCCGTCCACAAATTGGCTGTTGAGCC 502
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 420 AGTAGAGACTTCTTTGTTGGGTAAACATCAAGGACCCGTCCACAAGTTGGCTGTTGAGCC 479
Query 503 TGGAAGTCCTTTCTCATTCTATACTTGTGGTGAGGATGGGGCTGTCAAGCATTTTGATCT 562
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TGGAAGTCCCTTCTCATTCTATACTTGTGGTGAGGATGGGGCTGTAAAGCATTTTGATCT 539
Query 563 TAGGACTCGGGTGGCTACAAATCTTTTCACTTGTAAAGAAGCAAAGTTCAATTTAGTTGT 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TAGGACTCGGGTGGCTACAAATCTTTTCACTTGTAAAGAAGCAAAGTTCAATTTAGTTGT 599
Query 623 CTACTTGCATGCAATTGCAGTTGATCCTAGGAACCCTGGTCTTCTTGCCGTGGCTGGAAT 682
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 600 CTACTTGCATGCAATTGCAGTTGATCCGAGGAACCCTGGTCTTCTTGCGGTGGCTGGAAT 659
Query 683 GGATGAGTATGCTCGTGTCTATGATATTCGTAGCTATCGCTCCGAGGGTTGGTATAATTT 742
|||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 660 GGATGAGTATGCTCGTCTCTATGATATTCGCAGCTATCGCTCAGAGGGTTGGTATAATTT 719
Query 743 TACCCAACCCATAGACCACTTTTGTCCTGGCCATTTGATTGGAGATGACCATGTAGGAAT 802
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 720 TACCCAACCCGTAGACCACTTTTGTCCTGGCCATTTGATTGGAAATGACCATGTAGGAAT 779
Query 803 AACAGGTCTGGCTTTCTCGGATCAAAGTGAGCTCCTTGCTTCGTATAGTGACGAGTTCAT 862
||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 TACAGGTCTGGCATTCTCAGATCAAAGTGAGCTCCTTGCTTCATATAGTGACGAGTTCAT 839
Query 863 CTATCTTTTCACCCCTGATATGGGGCTTGGCCCAACCCCATATCCATCTTCAACTAAGAC 922
||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct 840 CTATCTTTTCACCCCTGATATGGGGCTAGGCCCAGCCCCATATCCTTCTTCAACTAAGAC 899
Query 923 TGAGGAGAGGATGACGCCTCAGGTTTATAAAGAGCACACGAACCGTGAAACAGTCAAAGG 982
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 900 TGAGGAGAGGATGACGCCTCAGGTTTATAAAGAGCACAAGAACCGTGAAACAGTCAAAGG 959
Query 983 TGTCAACTTTTTTGGACCCAAGTGTGAGTATGTGGTAAGTGGTTCTGACTGCGGCCGAAT 1042
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 TGTCAACTTTTTTGGACCCAAGTGTGAGTATGTGGTAAGTGGTTCTGACTGTGGCCGAAT 1019
Query 1043 ATTCATCTGGAGGAAGAAAGACGGAGAGCTTCTCCGTGCCATGGAAGCAGACAGACATGT 1102
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1020 ATTCATCTGGAGGAAGAAAGACGGAGAGCTCCTCCGTGCCATGGAAGCAGACAAACATGT 1079
Query 1103 TGTCAATTGTATAGAGTCTCATCCTCACATGCCACTGATGTGTAGCAGTGGAATAGATAC 1162
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGTCAACTGTATAGAGTCTCATCCTCACATGCCACTGATGTGTAGCAGTGGAATAGATAC 1139
Query 1163 TGATATCAAAATATGGACTCCTGGAGGAACCGAGAAACCTCTGTCGCCAGGAAATGCGAA 1222
|||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||
Sbjct 1140 TGATGTCAAAATATGGACTCCTGGAGGAACCGAGAAACCTGTGTCGCCAGCAAATGCAAA 1199
Query 1223 ACAGGCTTCGGGTTTTGGTAACCCACGATGGTTCGACGGATATTATGTGGATGACGATGA 1282
|||||||||| |||||||||||| |||||||||||||||||| ||||||||| |||||
Sbjct 1200 ACAGGCTTCGTGTTTTGGTAACCTGCGATGGTTCGACGGATATAATGTGGATGGTGATGA 1259
Query 1283 TGATTCTGACGATGAATCTAGTGAAGAGAGTTCAGATGATGATGATAGTTCGGAAGAGGA 1342
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1260 TGATTCTGACGATGAATCTAGTGAAGAGAGTTCAGATGATGATGATAGTGCGGAAGAGGA 1319
Query 1343 -G-G-A-GA-A-TGGTGAAGTTGATGTTGA-GATTACGAAGgatgatga 1384
| | | || | |||||||||||| ||||| ||| | || | |||||||
Sbjct 1320 AGAGGAAGAGAATGGTGAAGTTGAAGTTGATGATGATGATG-ATGATGA 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59763594405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5