BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38490.1
Length=728
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490609 jgi|Araly1|490609|fgenesh2_kg.7__42__AT4G38490.1 728 0.0
> Ahg490609 jgi|Araly1|490609|fgenesh2_kg.7__42__AT4G38490.1
Length=623
Score = 728 bits (394), Expect = 0.0
Identities = 575/654 (88%), Gaps = 45/654 (7%)
Strand=Plus/Plus
Query 12 AAAAAGGCCCATAGATC-ATCGAAGGCCTTTGATATCTGCGAC-G-GCGAGATCA-GCTT 67
||||||||||||||| | ||||||||||||||| ||||||||| | ||||| ||| ||||
Sbjct 1 AAAAAGGCCCATAGA-CTATCGAAGGCCTTTGACATCTGCGACTGCGCGAGGTCAGGCTT 59
Query 68 CGTCTTCCTCCAA--C--GCTCGATTTAGGGAGGATGGTGGTTTCTCCGGGGCTGCTCTC 123
||||||||||||| | ||||| || |||||||||||||||||||||||||||||||||
Sbjct 60 CGTCTTCCTCCAACGCTTGCTCGCTTGAGGGAGGATGGTGGTTTCTCCGGGGCTGCTCTC 119
Query 124 AACTGTTTCAGGCGTAATCCGATTGGCTCCGTCACACCGGATTCTAAGACGCGATGGGTT 183
|| |||||||||| |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 120 AAATGTTTCAGGCTTAATCCGATTGGCTCCGTCACACCGGATTCAAATACGCGATGGGTT 179
Query 184 CGGACCCATTTGCTTCAAGTTTTCTGGGGAT-TTGAGTATCAATGGGAGAGTCAGTCATA 242
|||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 180 CGGACCCAGTTGCTTCAAGTTTTCTGGGGATCCT-AGTATCAATGGGAGAGTCAGTCATA 238
Query 243 AACATGTGCGTGG-AAGTGGCACGGTGGGATCTGTAGGTTCCGCTCGTGAAAGTTGGAGC 301
||||||||||||| | ||||||||||| ||||||| | | || |||||||||
Sbjct 239 AACATGTGCGTGGCTA-TGGCACGGTGGTATCTGTA-G----G-TC---AAAGTTGGA-- 286
Query 302 TCTCATAAGAAGCTTCCCGAAGAAGAGCCCTTATGGCTGAGTCTTCTTAGAGACATGGTC 361
|| ||||| ||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 287 ----AT---AAGCTACCCGAAGAAGAGCCCTTATGGCTCAGCCTTCTTAGAGACATCGTC 339
Query 362 TGGAGCACGAGATCTCTCTTGTCTTTCATGGCTGAGCAACCAAGTCAGCTGAAATACATA 421
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 340 TGGAGCACAAGATCTCTCTTGTCTTTCATGGCTGAGCAACCGAGTCAGCTGAAGTACATA 399
Query 422 GAGTGGCCAACTTTTGCAAGCACGCTAAAGACTGCTACACTGAGTCTGTGTCTGGTAGCT 481
|||||||||| |||| |||||||||| |||||||| |||||||||||||||||||||||
Sbjct 400 GAGTGGCCAAGTTTTACAAGCACGCTCAAGACTGCGACACTGAGTCTGTGTCTGGTAGCC 459
Query 482 GTATTCATTGTTGCGCTATCATCGGTGGATGCTGCTCTTTGTTACATATTGGCGTTGATC 541
|| |||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 460 GTCTTCATTGTTGGGCTATCGTCGGTGGACGCTGCACTTTGTTACATATTGGCGTTGATC 519
Query 542 TTGAGGAAAGCCCCATGAGGAAGG----CAACTCCATTATCATTTGTCTCTTGTAGCCTT 597
|||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 520 TTGAGGAAAGCCCCATGAGGAAGGAAGGCAACTCCATTATCATGCGTCTCTTGGAG---- 575
Query 598 ATTGATAGGTGAATGTTTTTGATGTAGATAGAATGCAGGAGGATGTACTCAAAA 651
|| | || ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 576 AT-GTTA----AATGTTTTTGATGTAGAAAGAATGCAGGAGGATGTACT-AAAA 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26800410651
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5