BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38500.1
Length=2372
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490610 jgi|Araly1|490610|fgenesh2_kg.7__43__AT4G38500.1 2761 0.0
> Ahg490610 jgi|Araly1|490610|fgenesh2_kg.7__43__AT4G38500.1
Length=2052
Score = 2761 bits (1495), Expect = 0.0
Identities = 1679/1765 (95%), Gaps = 23/1765 (1%)
Strand=Plus/Plus
Query 622 TAATAAAGCTGGCCTCTTTC-TTC---CGAGATGGTTCTTGAGCGATGATGAGTGACTCT 677
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 297 TAATAAAGCTGGCCTCTTTCTTTCTGTAGAGATGGTTCTTGAGCGATGATGAGTGACTCT 356
Query 678 CAGCGATCACTTTCTGTGCGATTGAGCCGCCGGGGTGAGAGAAGCAATCATTACTCACAA 737
||||||||||||||||||||||||||||||||||| ||||||| ||||| | | | ||
Sbjct 357 CAGCGATCACTTTCTGTGCGATTGAGCCGCCGGGGAGAGAGAATCAATC---A-T-A-AA 410
Query 738 TCTAAAGATGCTGTGGCTGGCTTCTTCTCTCCCACCAGATTGCATGCTGATTACACTTTG 797
||||||||||||| ||||||||||||||||||||||||| | ||| | ||||||||||||
Sbjct 411 TCTAAAGATGCTGAGGCTGGCTTCTTCTCTCCCACCAGACTCCATACCGATTACACTTTG 470
Query 798 aaaaaaaTTTGGAAGGCAGGCTTCCTTCGCTTGCTTCTTGTTGGCGGCATTGTCTGGATG 857
||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct 471 AAAAAGATTTGGAAGGCGGGATTCCTTCGCTTGCTTCTTGTTGGCGGCATTCTCTGGATG 530
Query 858 CTACTCATTCTATTTGCCCTCTTGTTTCATGTTTGGTCCTGTCAATCTTCCCTTTCTTTC 917
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CTACTCATTCTCTTTGCCCTCTTGTTTCATGTTTGGTCCTGTCAATCTTCCCTTTCTTTC 590
Query 918 TTCTCAGCTATTTGCAACAAAGAAGGCAGACTCTATGTCATGTTGGACACTATTGGATTT 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TTCTCAGCTATTTGCAACAAAGAAGGCAGACTCTATGTCATGTTGGACACTATTGGATTT 650
Query 978 GTACCTAAACCCCAGCACCGATGCCCCATTCCCGTTGATTATGACCCTGATAAGGTGCTC 1037
|||||||| || || ||||||||||||||||| || | ||||| |||||||||||||||
Sbjct 651 GTACCTAAGCCGCAACACCGATGCCCCATTCCAGTAGCCTATGATCCTGATAAGGTGCTC 710
Query 1038 CTACCAAGTGATAAAACCGCAGATACAATTGTCAGAAATTTGACCTACGTAACAGAGGAT 1097
|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 711 CTTCCAAGTGAAAAAACCGCAGATACAATTGTCAGAAATTTGACCTACGTCACAGAGGAT 770
Query 1098 GAATCCTCTAAGTCTCAGTTTCCTCTATTTGGCGGAAACATAAGCTGGTCTGAACGAGAA 1157
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 771 GAATCCTCTAAGTCTCTGTTTCCTCTTTTTGGCGGAAACATAAGCTGGTCTGAACGAGAA 830
Query 1158 GAAAGCTTCAAACTGAAACCTGAGATGAAGGTCCATTGCGGATTCATGCCACGTGGTGGT 1217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GAAAGCTTCAAACTGAAACCTGAGATGAAGGTCCATTGCGGATTCATGCCACGTGGTGGG 890
Query 1218 GCTGAAATGTCATCTCTGGATAAAGAATACGTAAAGAAGTGCAGATTTGTTGTTGCCACG 1277
|| || |||||||||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct 891 GCAGAGATGTCATCTCTGGATAAAGAATACGTAAAGAAATGTAGATTCGTTGTTGCAACG 950
Query 1278 GGGATTTTCGATGCATATGATGAACCCCACCAGCCATCAAACATAAGCAAGCGTTCTATG 1337
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 951 GGGATTTTTGATGCATATGATGAACCCCACCAGCCATCAAACATAAGCAAGCGTTCTAAG 1010
Query 1338 AATCTCTTCTGTTTCCTTATGGTGGTAGATGAGGTCTCTCTCGATTTCTTAAGAAAAAAT 1397
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1011 AATCTCTTCTGTTTCCTTATGGTGGTAGATGAGGTCTCTCTCGATTTCTTGAGGAAAAAT 1070
Query 1398 ACTACTGTGAGGAAAGATGTTGAAGGAGGCATATGGGTTGGCATTTGGCGTCTGATTCTA 1457
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1071 ACCACTGTGAGGAAAGATGTTGAAGGAGGCAAATGGGTTGGCATTTGGCGTCTGATTCTA 1130
Query 1458 CTGAAAACTCCTCCATATGATGAGCCTAGGAGGAACGGTAAAGTCCCGAAAATCTTAACT 1517
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1131 CTGAAAACTCCTCCATATGATGAACCTAGGAGGAATGGTAAAGTCCCGAAAATCTTAACT 1190
Query 1518 CACAGGTTATTCCCTGAAGCACAGTACAGCATTTGGATTGATGGGAAAATGGAGCTTATT 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CACAGGTTATTCCCTGAAGCACAGTACAGCATTTGGATTGATGGGAAAATGGAGCTTATT 1250
Query 1578 GTTGACCCCTTGCTTATTCTAGAAAGGTATTTGTGGCGTGGGAAACATACTTTTGCCATT 1637
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GTTGATCCCTTGCTTATTCTAGAAAGGTATTTGTGGCGTGGGAAACATACTTTTGCCATT 1310
Query 1638 GCCCAACACAAACACCACCGAAACATATATGAGGAAGCTGATGCGTGCAAGAGGAGAAAG 1697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GCCCAACACAAACACCACCGAAACATATATGAGGAAGCTGATGCGTGCAAGAGGAGAAAG 1370
Query 1698 CGATACGCCCGACCTCTGGTTGATCTTCATATGAAAATATATCGATACGAGGGCTTGGAA 1757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 CGATACGCCCGACCTCTGGTTGATCTTCATATGAAAATATATCGATACGAGGGCTTGGAA 1430
Query 1758 CCATGGAGCATCAAGAAGAACACTGTTAGTGATGTTCCAGAGGGAGCTGTGATAATAAGA 1817
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1431 CCATGGAGCATCAAGAAGAACACTGTTAGTGATGTTCCAGAGGGAGCGGTGATAATAAGA 1490
Query 1818 GAGCACACTGCAATGAACAATCTGTTCAGCTGCCTGTGGTTCAATGAGGTACACCTGTTA 1877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 GAGCACACTGCAATGAACAATCTGTTCAGCTGCCTGTGGTTCAATGAGGTACACCTGTTA 1550
Query 1878 ACACCGAGGGACCAGCTAAGCTTTGGGTATGTAGTGGACAGACTAAAAGGAGCCTTCAAG 1937
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1551 ACACCGAGGGACCAGCTAAGCTTTGGGTATGTAGTGGACAGACTGAAAGGAGCCTTCAAG 1610
Query 1938 GTGTTCATGTTCCAGAACTGTGAGTATAACTCTCTCTTCGAACTGCACCCTCACATTCGA 1997
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1611 GTGTTCATGTTCCAGAACTGTGAGTACAATTCTCTCTTCGAACTGCACCCTCACATTCGA 1670
Query 1998 GAGCATTCCTCGAAGATTGAGTGGGTCAAGAGTCTTCAGGAACTCAAAGGGAAGGGAGAG 2057
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1671 GAGCATTCCTCGAAGATCGAGTGGGTCAAGAGCCTTCAGGAACTTAAAGGGAAGGGAGAG 1730
Query 2058 AGTTTGAAGGAAAGCCGAGGCGGCTTTGGGCTCTGGACTCCTTACCCTGGTGACCTTGAT 2117
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1731 AGTTTGAAGGAAAGTCGAGGCGGCTTTGGGCTCTGGACTCCTTACCCTGGGGACCTTGAT 1790
Query 2118 TCTGTTGAGCTGCCAAAAGTAGTAAGAACTTCTAAAGCTGGTTGAGACAGTAAACATTAT 2177
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 TCCGTTGAGCTGCCAAAAGTAGTAAGAACTTCTAAAGCTGGTTGAGACAGTAAACATTAT 1850
Query 2178 ACACTAGTTTTTAACTTTCGTTTGATCGCTGTCTTCGG-TT---TTC----C-GAATTTT 2228
|||||||||||||||||| ||||||||||||||| ||| || ||| | |||||||
Sbjct 1851 ACACTAGTTTTTAACTTTTGTTTGATCGCTGTCTGCGGCTTGGATTCAATTCCGAATTTT 1910
Query 2229 CCAATTTATCAAACATACACGTCTTTTGAATTCTATTTGTAGATCGAAGAATCAAATGTA 2288
||||||||| | ||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 1911 CCAATTTATTAGACATACACGTCTTCTGAATTCTATTTGTAGATCGAAGATTCAAATGCA 1970
Query 2289 AAACCCAAATTGTTATaaaaaaaGAAGAAGAAGCTGCATTGACATTCGTGA-CAGTAATA 2347
|||||||||||||||| |||||| || || |||||||||||| |||||||| | ||||||
Sbjct 1971 AAACCCAAATTGTTATTAAAAAA-AA-AA-AAGCTGCATTGATATTCGTGATCTGTAATA 2027
Query 2348 AGACAAACAAATGTATGTTGTTCTG 2372
|||||||||||||||| ||||||||
Sbjct 2028 AGACAAACAAATGTATATTGTTCTG 2052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89359714770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5