BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38510.5
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490612 jgi|Araly1|490612|fgenesh2_kg.7__45__AT4G38510.2 2457 0.0
Ahg476752 jgi|Araly1|476752|fgenesh2_kg.2__1882__AT1G76030.1 1103 0.0
> Ahg490612 jgi|Araly1|490612|fgenesh2_kg.7__45__AT4G38510.2
Length=1835
Score = 2457 bits (1330), Expect = 0.0
Identities = 1465/1527 (96%), Gaps = 21/1527 (1%)
Strand=Plus/Plus
Query 199 ATCTAAAATGGGTGCTGCTGAAAACAACCTTGAAAT---GGAGGGTACCCTGGAGATCGG 255
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 35 ATCTAAAATGGGTGCTGCTGAAAACAACCTTGAAATGGAGGAGGGTACCCTGGAGATCGG 94
Query 256 CATGGAGTATAGAACTGTTTCTGGTGTTGCGGGACCTCTCGTCATCCTTGAAAAAGTCAA 315
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 95 CATGGAGTATAGAACTGTCTCTGGTGTTGCCGGCCCTCTCGTCATCCTTGAAAAAGTCAA 154
Query 316 GGGGCCTAAATACCAAGAAATTGTCAATATCCGTCTTGGGGATGGAACTACCCGACGTGG 375
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 GGGCCCTAAATACCAAGAAATTGTCAATATCCGTCTTGGGGATGGAACTACCCGACGTGG 214
Query 376 TCAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTATTTGAGGGAACATCTGG 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 TCAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTATTTGAGGGAACATCTGG 274
Query 436 AATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAGGTTTTGAAAACTCCTGTTTC 495
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 AATTGACAACAAGTACACAACTGTGCAATTTACAGGAGAGGTTTTGAAAACTCCTGTTTC 334
Query 496 TTTGGATATGCTTGGTCGCATCTTCAATGGTTCAGGGAAGCCCATTGACAACGGTCCACC 555
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 335 TTTGGATATGCTTGGTCGCATCTTCAATGGTTCAGGGAAGCCCATTGACAATGGTCCACC 394
Query 556 TATATTGCCTGAGGCGTACTTGGATATTTCTGGAAGTTCTATCAATCCCAGTGAGAGAAC 615
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 TATATTGCCCGAGGCATACTTGGATATTTCTGGAAGTTCTATCAATCCCAGTGAGAGAAC 454
Query 616 CTATCCTGAAGAGATGATTCAGACGGGTATATCCACCATTGATGTCATGAACTCTATCGC 675
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 455 CTATCCTGAAGAGATGATTCAGACGGGGATATCCACCATTGATGTCATGAACTCTATCGC 514
Query 676 CAGAGGACAGAAGATTCCCCTCTTTTCTGCCGCAGGTCTTCCCCACAATGAAATTGCTGC 735
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 515 CAGAGGACAGAAGATTCCCCTCTTTTCTGCTGCAGGTCTTCCCCACAATGAAATTGCTGC 574
Query 736 TCAGATTTGCCGTCAGGCTGGTTTGGTTAAGCGTTTAGAGAAGTCAGATAATCTTCTCGA 795
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 575 TCAGATTTGCCGTCAGGCTGGTTTGGTTAAGCGTTTAGAGAAGTCGGATAATCTCCTCGA 634
Query 796 GCATCAGGAGGATGATAACTTCGCCATTGTGTTCGCAGCAATGGGTGTGAACATGGAGAC 855
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 GCACCAAGAGGATGATAACTTCGCCATTGTGTTCGCAGCAATGGGTGTGAACATGGAGAC 694
Query 856 TGCACAATTTTTTAAACGTGATTTCGAGGAGAATGGATCGATGGAGAGAGTGACTCTTTT 915
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 695 TGCGCAATTTTTTAAACGTGATTTCGAGGAGAATGGGTCGATGGAGAGAGTGACTCTTTT 754
Query 916 CCTTAA-----C---T-T-G--GCAAACGACCCCACTATTGAGCGTATCATCACTCCTCG 963
|||||| | | | | ||||||||||||||||||||||||||||||||||||||
Sbjct 755 CCTTAACTTGGCAAGTCTCGCAGCAAACGACCCCACTATTGAGCGTATCATCACTCCTCG 814
Query 964 TATCGCACTTACAACTGCTGAGTACTTGGCATATGAATGTGGCAAGCATGTCCTTGTCAT 1023
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TATTGCTCTTACAACGGCTGAGTACTTGGCATATGAATGTGGCAAGCATGTCCTTGTCAT 874
Query 1024 TCTCACAGACATGAGTTCCTACGCCGATGCTCTTCGTGAGGTCTCTGCTGCCCGTGAAGA 1083
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 875 TCTCACAGACATGAGTTCCTACGCTGATGCTCTTCGTGAGGTCTCTGCTGCCCGTGAAGA 934
Query 1084 AGTGCCTGGAAGGCGTGGTTACCCAGGTTACATGTACACCGACTTGGCTACCATATACGA 1143
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 935 AGTGCCTGGAAGGCGTGGTTACCCAGGTTACATGTACACCGACTTGGCTACTATATACGA 994
Query 1144 GAGAGCAGGGCGAATTGAAGGGAGGAAAGGTTCCATCACTCAAATTCCCATTTTAACCAT 1203
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 995 GAGAGCGGGGCGAATTGAAGGAAGGAAAGGTTCCATCACTCAAATTCCCATTTTAACCAT 1054
Query 1204 GCCAAACGATGATATCACGCATCCCACACCAGATCTGACAGGATACATTACAGAGGGGCA 1263
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1055 GCCAAACGATGATATCACACATCCCACACCGGATCTGACAGGATACATTACAGAGGGCCA 1114
Query 1264 AATCTATATTGACCGACAACTTCACAATAGACAGATCTACCCTCCGATCAATGTCTTGCC 1323
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1115 AATCTATATTGACCGACAACTTCACAATAGACAGATATACCCTCCGATCAATGTCTTGCC 1174
Query 1324 ATCTCTGTCTCGTCTCATGAAGAGTGCCATTGGTGAGGGTATGACTCGCAGGGACCACTC 1383
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 ATCTCTGTCTCGTCTTATGAAGAGTGCCATTGGTGAGGGTATGACTCGCAGGGACCACTC 1234
Query 1384 TGATGTTTCTAATCAATTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAA 1443
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1235 TGATGTTTCTAATCAATTGTATGCCAACTACGCTATTGGAAAGGACGTCCAGGCCATGAA 1294
Query 1444 AGCCGTGGTTGGAGAAGAAGCTCTTTCTTCCGAGGATCTGCTATATCTTGAGTTCTTGGA 1503
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1295 AGCCGTGGTTGGAGAAGAAGCTCTTTCTTCCGAGGATCTGCTATATCTGGAGTTCTTGGA 1354
Query 1504 TAAGTTCGAGAGGAAGTTTGTGGCTCAGGGAGCTTATGATACCCGAAACATCTTCCAGTC 1563
||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1355 CAAGTTCGAGAGGAAGTTTGTGGCTCAGGGAGCTTACGATACCCGGAATATCTTCCAGTC 1414
Query 1564 ACTCGACCTGGCATGGACTCTCCT-CAGAATCTTCCCCCGTGAGTTACTTCACCGTATAC 1622
|||||||||||||||||| ||||| | ||||||||||||||||||| |||||||||||||
Sbjct 1415 ACTCGACCTGGCATGGACACTCCTGC-GAATCTTCCCCCGTGAGTTGCTTCACCGTATAC 1473
Query 1623 CCGCGAAAACCCTTGATCAGTTTTACAGTCGCGATACCACCAACTGAA-GAACATAGTTT 1681
| |||||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||
Sbjct 1474 CGGCGAAAACCCTTGATCAGTTTTACAGCCGCGACACCACCAACTGAAAGA-CATAGTTT 1532
Query 1682 CTACTGCC-TTGGTGTGATGATATGTC 1707
||| || | ||||||||||||||||||
Sbjct 1533 CTA-TGGCGTTGGTGTGATGATATGTC 1558
> Ahg476752 jgi|Araly1|476752|fgenesh2_kg.2__1882__AT1G76030.1
Length=1849
Score = 1103 bits (597), Expect = 0.0
Identities = 1166/1440 (81%), Gaps = 41/1440 (3%)
Strand=Plus/Plus
Query 237 AGGGTACCCTGGAGATCGGCATGGAGTATAGAACTGTTTCTGGTGTTGCGGGACC-TCTC 295
|||| || ||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 158 AGGG-ACTCTGGAGATCGGCATGGAGTATAGAACTGTTTCTGGTGTTGCTGGACCAT-TG 215
Query 296 GTCATCCTTGAAAAAGTCAAGGGGCCTAAA-TACCAAGAAATTGTCAATATCCGTCTTGG 354
||||| ||||| ||||| ||||| || ||| ||||| || ||||| ||||| ||| || |
Sbjct 216 GTCATTCTTGATAAAGTGAAGGGTCC-AAAGTACCAGGAGATTGTTAATATTCGT-TTAG 273
Query 355 G-GATGGAACTACCCGACGTGGTCAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTC 413
| |||||| | || ||||||| || ||| | |||||||| ||||||||||| ||||| |
Sbjct 274 GAGATGGATCAACGAGACGTGGCCAGGTTTTGGAAGTTGACGGAGAGAAAGCAGTTGTGC 333
Query 414 AGGTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAG 473
|||| ||||| |||||||||||||| |||||||||| || || |||||||| |||||||
Sbjct 334 AGGTTTTTGAAGGAACATCTGGAATTGACAACAAGTTTACCACCGTGCAATTCACAGGAG 393
Query 474 AGGTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGTTCAGGGA 533
||||||||||||||||||| || ||||| |||||||| ||||| || || |||||||| |
Sbjct 394 AGGTTTTGAAAACTCCTGTGTCATTGGACATGCTTGGGCGCATATTTAACGGTTCAGGAA 453
Query 534 AGCCCATTGACAACGGTCCACCTATATTGCCTGAGGCGTAC-TTGGATATTTCTGGAAGT 592
|||| ||||| || || || ||||| ||||| ||||| ||| ||| |||| || ||||||
Sbjct 454 AGCCGATTGATAATGGCCCTCCTATTTTGCCAGAGGCATACCTTG-ATATCTCAGGAAGT 512
Query 593 TCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGACGGGTATATCCACC 652
|| ||||| |||||||| ||||||||||| ||||||||||| ||||| || || ||||||
Sbjct 513 TCAATCAACCCCAGTGAAAGAACCTATCCCGAAGAGATGATACAGACAGGAATTTCCACC 572
Query 653 ATTGATGTCATGAACTCTATCGC-CAGAGGACAGAAGATTCCCCTCTTT-TCTGCCGCAG 710
|| ||||||||||| || || || | | |||||||||||||| || ||| ||||| || |
Sbjct 573 ATCGATGTCATGAATTCCATTGCTC-GTGGACAGAAGATTCCGCT-TTTCTCTGCTGCTG 630
Query 711 GTCTTCCCCACAATGAAATTGCTGCTCAGATTTGCCGTCAGGCTGGT-TTGGTTAAGCGT 769
||||||| || |||||||| |||||||||||||| |||||||||||| ||| | || |||
Sbjct 631 GTCTTCCACATAATGAAATAGCTGCTCAGATTTGTCGTCAGGCTGGTCTTG-TCAAACGT 689
Query 770 TTAGAGAAGTCAGATAATCTTCTCGAGCATCA-GGAGGATGATAACTTCGCCATTGTGTT 828
|| || ||| | | | |||| || ||| |||| |||| | || || || || ||||||||
Sbjct 690 TTGGAAAAGACTGTTGATCTACTTGAGGATCATGGAG-AGGACAATTTTGCAATTGTGTT 748
Query 829 CGCAGCAATGGGTGTGAACATGGAGACTGCACAATTTTTTAAACGTGATTTCGAGGAGAA 888
||||| |||||||||||||||||||| || || || || || || ||||| || || ||
Sbjct 749 TGCAGCTATGGGTGTGAACATGGAGACAGCTCAGTTCTTCAAGCGAGATTTTGAAGAAAA 808
Query 889 TGGATCGATGGAGAGAGTGACTCTTTTCCTTAACTTGGCAAACGACCCCACTATTGAGCG 948
|||||| ||||||||||| ||||||||||| ||| |||| || ||||| || |||||| |
Sbjct 809 TGGATCAATGGAGAGAGTTACTCTTTTCCTGAACCTGGCCAATGACCCAACGATTGAGAG 868
Query 949 TATCATCACTCCTCGTATCGCACTTACAACTGCTGAGTA-CTTGGCATATGAATGTGGCA 1007
|||||||||||||| || || || ||||| ||||| || || ||| ||||||||||| |
Sbjct 869 AATCATCACTCCTCGAATTGCCCTCACAACAGCTGAATATCT-GGCTTATGAATGTGGGA 927
Query 1008 AGCATGTCCTTGTCAT-TCTCACAGACATGAGTTCCTACGCCGATGCTCTTCGTGAGGTC 1066
| || |||||||| || | | ||||| |||||||| || || |||||||||||||||||
Sbjct 928 AACACGTCCTTGTTATAT-TGACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTT 986
Query 1067 TCTGCTGCCCGTGAAGAAGTGCCTGGAAGGCGTGGTTACCCAGGTTACATGTACACCGA- 1125
|| |||||||| ||||| || || ||||| ||||| || |||||||| |||||||| ||
Sbjct 987 TCCGCTGCCCGAGAAGAGGTTCCCGGAAGACGTGGATATCCAGGTTATATGTACACTGAT 1046
Query 1126 CTTGGCTACCATATACGAGA-GAGCAGGGCGAATTGAAGGGAGGAAAGGTTCCATCACTC 1184
|||| | || || || || | | || ||||| |||||||| || |||||||||||||| |
Sbjct 1047 CTTG-CAACTATTTATGA-ACGTGCTGGGCGTATTGAAGGAAGAAAAGGTTCCATCACCC 1104
Query 1185 AAATTCCCATTT-TAACCATGCCAAACGATGATATCACGCATCCCACACCAGATCTGACA 1243
|||| |||| | | || ||||| || || || ||||| ||||| || || ||||| ||
Sbjct 1105 AAAT-CCCAATCCTCACTATGCCCAATGACGACATCACTCATCCAACTCCGGATCTTACT 1163
Query 1244 GGATACATTACAGAGGGGCAAATCTATATTGACCGACAACTTCACAATAGACAGATCTAC 1303
|| |||||||| || || || || ||||| || | ||||| ||||| |||||||| ||
Sbjct 1164 GGTTACATTACTGAAGGTCAGATATATATCGATAGGCAACTGCACAACAGACAGATATAT 1223
Query 1304 CCTCCGATCAATGT-CTTGCCATCTCTGTCTCGTCTCATGAAGAGTGCCATTGGTGAGGG 1362
|| || ||||| || ||| ||||| || |||||| | ||||||||||| ||||| |||||
Sbjct 1224 CCACCCATCAACGTGCTT-CCATCCCTTTCTCGTTTAATGAAGAGTGCTATTGGCGAGGG 1282
Query 1363 TATGACTCGCAGGGACCACTCTGATGTTTCTAATCAATTGTATGCCAATTACGCTATTGG 1422
|||||||| | || || || ||||| || || || ||||||| ||||| || || ||
Sbjct 1283 CATGACTCGTAAAGATCATTCAGATGTGTCGAACCAGCTGTATGCGAATTATGCAATCGG 1342
Query 1423 -AAAGGACGTGCAGGCCATGAAAGCCGTGGTTGGAGAAGAAGCTCTTTCTTCCGAGGATC 1481
|||| | || || || |||||||| || |||||||||||||| |||||||| |||||||
Sbjct 1343 GAAAG-ATGTTCAAGCGATGAAAGCTGTTGTTGGAGAAGAAGCACTTTCTTCAGAGGATC 1401
Query 1482 TGCTATATCTTGAGTTCTTGGATAAGTTCGAGAGGAAGTTTGTGGCT-CAGGGAGCTTAT 1540
|||| ||||| ||||| ||||||||||| |||||||||||||| | || |||||||||
Sbjct 1402 TGCTTTATCTAGAGTTTTTGGATAAGTTTGAGAGGAAGTTTGTAA-TGCAAGGAGCTTAT 1460
Query 1541 GATACCCGAAACATCTTCCAGTCACTCGACCTGGCATGGAC-TCTCCTCAGAATCTTCCC 1599
|| || || ||||| || ||||| || || | || ||||| | | ||| | ||||||||
Sbjct 1461 GACACACGCAACATTTTTCAGTCGCTGGATTTAGCTTGGACAT-TGCTCCGTATCTTCCC 1519
Query 1600 CCGTGAG-TTACTTCACCGTATACCC-GCGAAA-ACCCTTGATCAGTTTTACAGTCGCGA 1656
|| ||| || ||||||||||| ||| || ||| || ||||| || || ||||| |||||
Sbjct 1520 ACGGGAGCTT-CTTCACCGTAT-CCCTGC-AAAGACACTTGACCAATTCTACAGCCGCGA 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64029701845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5