BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38520.1
Length=1993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490616 jgi|Araly1|490616|fgenesh2_kg.7__49__AT4G38520.2 2041 0.0
> Ahg490616 jgi|Araly1|490616|fgenesh2_kg.7__49__AT4G38520.2
Length=1796
Score = 2041 bits (1105), Expect = 0.0
Identities = 1287/1368 (94%), Gaps = 39/1368 (3%)
Strand=Plus/Plus
Query 487 AAAAACGGACAAGTTCTATG-T-T-GT--G-G---CGGATGAGATGAGGGATGCTATCTG 537
|||||| ||||||||||||| | | || | | |||||||||||||||||||||||||
Sbjct 397 AAAAACTGACAAGTTCTATGTTGTGGTGGGAGATTCGGATGAGATGAGGGATGCTATCTG 456
Query 538 GGTTGATGAATTTTCTGAATGCCTGTCTCTGGCCACGGTCAGATCAGCAGGCTCGTTCTG 597
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 457 GGTTGATGAATTTTCTGAATGCCTGTCTCTGGCCACGGTCAGATCAGCAGGCACGTTCAG 516
Query 598 CCTCAGATTCTGGTGGCCGCCAAGAGGGTTTGCTCTGGT-TCAGAGACTCCGGC-CAGCA 655
|||| || ||||| ||||||||||||||||||||||||| | ||||||||| || |||||
Sbjct 517 CCTCCGACTCTGGCGGCCGCCAAGAGGGTTTGCTCTGGTAT-AGAGACTCC-GCTCAGCA 574
Query 656 CGTCTTTGGTGACTTCTCCATGGCCGTCGTTCAAGCCAACAGCTTGCTAGAGGACCAGAG 715
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 575 CGTCTTTGGTGACTTCTCCATGGCCGTCGTTCAAGCCAACAGCTTGCTCGAGGACCAGAG 634
Query 716 CCAGCTCGAGTCTGGCTCTCTTAGCTCCCACGACTCTGGTCCCTTTGGCACCTTTGTTGG 775
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 635 CCAGCTCGAGTCTGGCTCTCTTAGCTCTCACGACTCTGGTCCCTATGGCACCTTTGTTGG 694
Query 776 CGTCTACGACGGCCACGGTGGGCCTGAGACATCTCGCTTCATCAATGATCATATGTTCCA 835
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 695 CGTCTACGACGGCCACGGTGGCCCTGAGACTTCTCGCTTCATCAATGATCATATGTTCCA 754
Query 836 CCACCTCAAGAGGTTTACTGCAGAGCAACAGTGTATGTCATCAGAGGTGATaaaaaaaGC 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 755 CCACCTCAAGAGGTTTACTGCAGAGCAACAGTGTATGTCATCAGAGGTGATAAAAAAGGC 814
Query 896 GTTCCAAGCCACTGAAGAAGGCTTCTTATCCATAGTTACAAATCAATTTCAAACTAGACC 955
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 815 GTTCCAAGCGACTGAAGAAGGGTTCTTATCCATAGTTACAAATCAATTTCAAACTAGACC 874
Query 956 TCAGATAGCCACAGTGGGATCATGCTGTCTTGTAAGTGTCATCTGCGATGGGAAGCTATA 1015
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 875 TCAGATAGCCACTGTGGGGTCATGCTGTCTTGTAAGTGTCATCTGCGATGGGAAGCTCTA 934
Query 1016 CGTGGCCAACGCAGGGGACTCACGGGCCGTTCTGGGACAAGTCATGAGGGTAACAGGTGA 1075
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 935 CGTGGCCAACGCAGGTGACTCACGGGCCGTTCTGGGACAAGTCATGAGGGTAACCGGTGA 994
Query 1076 AGCTCATGCCACTCAGCTCTCAGCAGAGCACAACGCATCTATAGAGTCAGTGAGACGGGA 1135
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 995 AGCTCATGCCACTCAGCTCTCAGCCGAGCACAACGCATCTATAGAGTCAGTGAGACGGGA 1054
Query 1136 ACTTCAGGCCCTGCATCCGGATCATCCAGATATTGTGGTTCTGAAACATAACGTCTGGCG 1195
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1055 ACTTCAAGCCCTGCATCCGGATCATCCGGATATTGTGGTTCTGAAACATAACGTCTGGCG 1114
Query 1196 AGTAAAAGGCATCATTCAGGTTTCAAGATCCATTGGTGATGTGTATTTGAAAAGGTCAGA 1255
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1115 AGTAAAAGGCATCATTCAGGTTTCAAGATCCATTGGTGATGTGTATTTGAAACGGTCAGA 1174
Query 1256 GTTCAACAGGGAACCACTGTATGCAAAATTCCGGCTGAGGTCACCGTTCAGCAAGCCATT 1315
||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1175 GTTCAACAGGGAACCGCTGTATGCAAAATTCAGGCTCAGGTCACCGTTCAGCAAGCCATT 1234
Query 1316 ACTGAGTGCAGAGCCGGCGATCACGGTGCATACACTGGAGCCGCACGATCAGTTCATTAT 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 ACTGAGTGCAGAGCCGGCGATCACGGTGCATACACTGGAGCCGCACGATCAGTTCATTAT 1294
Query 1376 ATGTGCATCAGATGGACTGTGGGAACATATGAGCAACCAAGAAGCAGTAGACATAGTCCA 1435
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1295 ATGTGCTTCAGATGGACTGTGGGAACATATGAGTAACCAAGAAGCAGTAGACATCGTCCA 1354
Query 1436 GAATCATCCGCGAAACGGGATAGCAAAGCGGCTGGTGAAAGTAGCGCTACAAGAAGCGGC 1495
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1355 GAATCATCCGCGAAACGGGATTGCAAAGCGGCTGGTGAAAGTAGCGCTACAAGAAGCGGC 1414
Query 1496 AAAGAAGAGAGAGATGAGATACTCAGACCTGAAAAAGATAGACAGAGGAGTGAGGAGACA 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 AAAGAAGAGAGAGATGAGATACTCAGACCTGAAAAAGATAGACAGAGGAGTGAGGAGACA 1474
Query 1556 TTTCCACGATGACATAACAGTGATTGTTGTCTTCTTTGATACAAACCTAGTGAGCAGAGG 1615
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1475 TTTCCACGATGACATAACAGTGGTTGTTGTCTTCTTTGATACAAACCTAGTGAGCAGAGG 1534
Query 1616 AAG-TATGTTGAGAGGACCAGCCGTGTCAGTGAGAGGAGCGGGTGTGAATCTACCTCACA 1674
||| | ||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1535 AAGCT-TGTTGAGAGGACCGGCGGTGTCAGTGAGAGGAGCGGGTGTGAATCTACCTCACA 1593
Query 1675 ACACCCTGGCGCCTTGCACCACGCCCACTCAAGCTGCTGCTGCTGGCGCCTCCTGACTAT 1734
|||| ||||||||| ||||||||| || |||||||| | ||||||| ||||||| | |
Sbjct 1594 ACACATTGGCGCCTTACACCACGCCAACGCAAGCTGC-G--GCTGGCGGCTCCTGA-T-T 1648
Query 1735 TGAATTTTTACGGTGTCCTTAAAATTCTTTCCAAGATCCTTCCTGTAACtatatataaat 1794
| | |||||||||||||| |||||||||||||| | ||||||||||||| ||
Sbjct 1649 T---T----ACGGTGTCCTTAAA-TTCTTTCCAAGATC-T----GTAACTATATATATAT 1695
Query 1795 at---at-at-att-tgattattattatCATTGACTGGGAAAGGATAT 1836
|| || || ||| | || ||||||||||||||||||||||||||||
Sbjct 1696 ATTTGATTATCATTATTATCATTATTATCATTGACTGGGAAAGGATAT 1743
Score = 95.3 bits (51), Expect = 2e-18
Identities = 124/155 (80%), Gaps = 21/155 (14%)
Strand=Plus/Plus
Query 137 TCTTCTTCTTCCTCATCCGCTCGCTTATATTTA---ATTT-AATAATAATAAAAATCGGT 192
|||||||||||||||||||||||||||| ||| |||| |||||||||||||||| |
Sbjct 1 TCTTCTTCTTCCTCATCCGCTCGCTTATTTTTCTTTATTTTAATAATAATAAAAATCA-T 59
Query 193 -GTTCATTTTTATATAAAAGTATAAATTTTGTGTTTGGTTGATCCATCCGTAGTCGTAGT 251
| | |||| |||||| | | || || ||| ||||||||||||||| | ||||
Sbjct 60 CGGTG-TTTT-ATATAAT--T-TC--TTCTG-GTT-GGTTGATCCATCCGT--T-GTAG- 106
Query 252 AGATCTACAAGCTCTGAAATTCCACGCCCACATCT 286
| ||||||| ||| ||||||||||||||||||||
Sbjct 107 A--TCTACAAACTCAGAAATTCCACGCCCACATCT 139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74923511915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5