BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38530.1
Length=1816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490617 jgi|Araly1|490617|fgenesh2_kg.7__50__AT4G38530.1 1395 0.0
Ahg495989 jgi|Araly1|495989|fgenesh2_kg.8__1805__AT5G58670.1 435 7e-121
> Ahg490617 jgi|Araly1|490617|fgenesh2_kg.7__50__AT4G38530.1
Length=1781
Score = 1395 bits (755), Expect = 0.0
Identities = 841/882 (95%), Gaps = 7/882 (1%)
Strand=Plus/Plus
Query 869 AACAAGATTCTTGAAGAATATA-AAG-ATATGGAGAGTGAAGCTGT---AGGATATAGAG 923
|||||||||||||||||| | | || || |||||||||||||||| |||||||||||
Sbjct 902 AACAAGATTCTTGAAGAAGA-AGGAGAAT-TGGAGAGTGAAGCTGTAGGAGGATATAGAG 959
Query 924 ACTTGATAGCAATCCACGCTGCAAACTGCAAAGATCCTTCAAAGGATTGCTTGAGTGATG 983
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 960 ACTTGATCGCAATCCACGCTGCAAACTGCAAAGATCCTTTGAAGGATTGCTTGAGTGATG 1019
Query 984 ATCCAGAGAAGCCTATACGGGTCAGCATGGACGAGCAGTGGCTAGACACTATGGTTAGGA 1043
|||||||||||||| | |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1020 ATCCAGAGAAGCCTCGAAGGGTTAGCATGGACGAGCAGTGGCTAGAGACTATGGTTAGGA 1079
Query 1044 CCAGAGGAACGGATCTTGTCAGGTTTACACAGAGGAATCTGGTGAGGATATATCCAAAGG 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CCAGAGGAACGGATCTTGTCAGGTTTACACAGAGGAATCTGGTGAGGATATATCCAAAGG 1139
Query 1104 GCACAAGAGTGGACTCGTCAAACTACGATCCTCATGTTGGGTGGACACACGGTGCTCAAA 1163
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1140 GTACAAGAGTGGACTCGTCAAACTACGATCCCCATGTTGGTTGGACACACGGTGCTCAAA 1199
Query 1164 TGGTTGCTTTTAACATGCAAGGACATGGGAAGCAACTATGGATAATGCAAGGAATGTTCA 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGGTTGCTTTTAACATGCAAGGACATGGGAAGCAACTATGGATAATGCAAGGAATGTTCA 1259
Query 1224 GGGGGAATGGTGGATGTGGGTACGTTAAAAAGCCTCGCATCTTGCTAGACGAGCACACAC 1283
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GGGCGAATGGTGGATGTGGGTACGTTAAAAAGCCTCGCATCTTGCTAGACGAGCACACAC 1319
Query 1284 TCTTCGACCCTTGCAAAAGGTTTCCCATTAAGACCACTCTTAAGGTTAAGATTTACACTG 1343
|||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||| |
Sbjct 1320 TCTTCGACCCTTGCAAAAGGCTTCCCATCAAGACCACTCTCAAGGTGAAGATTTACACAG 1379
Query 1344 GCGAAGGATGGGATTTGGATTTCCATCATACACACTTTGATCAATACTCTCCTCCAGATT 1403
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1380 GCGAAGGATGGGATTTGGATTTCCATCAGACACATTTTGATCAATACTCTCCTCCAGATT 1439
Query 1404 TCTTCGTCAAGATTGGAATAGCAGGAGTACCGAGAGACACGGTCTCATACAGAACGGAAA 1463
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1440 TCTTCGTAAAGATTGGAATAGCAGGAGTTCCGAGAGACACGGTCTCATACAGAACGGAAA 1499
Query 1464 CAGCTGTCGATCAGTGGTTTCCTATATGGGGCAACGACGAGTTCCTGTTTCAGCTGTCTG 1523
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1500 CAGCTGTCGATCAGTGGTTTCCTATATGGAGCAACGACGAGTTCCTGTTTCAGCTGTGTG 1559
Query 1524 TTCCAGAACTGGCGCTTCTGTGGTTCAAAGTCCAAGACTACGACAATGACACCCAGAATG 1583
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1560 TTCCAGAACTGGCGCTTCTGTGGTTCAAGGTCCAAGACTACGACAATGACACCCAGAATG 1619
Query 1584 ATTTCGCAGGACAGACATGTCTTCCTCTGCCGGAACTGAAGTCCGGAGTTAGAGCCGTCC 1643
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1620 ATTTCGCAGGACAGACATGTCTTCCTCTGCCGGAACTGAAGTCCGGAGTCAGAGCCGTCC 1679
Query 1644 GGCTTCACGATCGAACAGGCAAGGCCTACAAGAACACGAGGCTTCTCGTCAGCTTCGCCT 1703
||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1680 GGCTTCACGATCGGGCAGGCAAGGCTTACAAAAACACGAGGCTTCTCGTCAGCTTCGCCT 1739
Query 1704 TGGATCCTCCTTATACGTTTCGTTGAATCTCGTTTTCTTTCC 1745
||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1740 TGGATCCTCCTTATACGTTTCACTGAAACTCGTTTTCTTTCC 1781
Score = 1352 bits (732), Expect = 0.0
Identities = 827/873 (95%), Gaps = 5/873 (1%)
Strand=Plus/Plus
Query 1 ATGATCTCAGAACTAACAAGTAAGAAG---AAGAAGAATGTCGGAGAGTTTCAAAGTGTG 57
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGCTCTCAGAACTAACAAGTAAGAAGAATAAGAAGAATGTCGGAGAGTTTCAAAGTGTG 60
Query 58 CTTCTGTTGCAGCAGAAGCTTTAAGGAGAAAACGAGGCAGCCACCAGTGAGCATCAAGAG 117
||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct 61 CTTCTGTTGTAGCAGAAGCTTCAAGGAGAAAACGAGGGAACCACCAGTGAGCATCAAGAG 120
Query 118 ACTCTTCGAAGCTTACTCAAGAAACGGCAAGATGTCTTTCGATGAGCTTCTAAGATTTGT 177
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 ACTCTTCGAAGCTTACTCAAGAAACGGCAAGATGTCTTTCGATGAGCTTCTTAGATTTGT 180
Query 178 GAGTGAAGTCCAAGGAGAACGGCACGCAGGGTTGGACTACGTGCAAGATATCTTCCACAG 237
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 GAGTGAAGTTCAAGGAGAGCGGCACGCAGGGTTGGACTACGTGCAGGATATCTTCCACAG 240
Query 238 CGTTAAACACCACAACGTTTTTCATCACCATGGACTTGTTCATCTCAACGCCTTCTATCG 297
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGTTAAACACCACAACATTTTTCATCACCATGGACTTGTTCATCTCAACGCCTTCTATCG 300
Query 298 CTACCTCTTCAGCGATACCAACTCTCCTCTTCCCATGTCTGGCCAGGTGCATCATGACAT 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTACCTCTTCAGCGATACCAACTCTCCTCTTCCCATGTCTGGCCAGGTGCATCATGACAT 360
Query 358 GAAGGCGCCGTTATCGCATTACTTTGTGTACACGGGACATAACTCTTACTTGACTGGGAA 417
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 361 GAAGGCGCCGTTATCGCATTACTTTGTCTACACGGGACACAACTCTTACTTGACTGGGAA 420
Query 418 CCAAGTGAACAGCAGAAGCAGCGTAGAACCGATCGTGCAGGCTCTCAGAAAAGGCGTAAA 477
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 421 CCAAGTGAACAGCAGAAGCAGCGTGGAGCCGATCGTGCAGGCTCTCAGAAAAGGCGTAAA 480
Query 478 AGTGATCGAGCTCGACTTATGGCCTAATCCTTCAGGGAACGCTGCTGAAGTTCGTCATGG 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGTGATCGAGCTCGACTTATGGCCTAATCCTTCAGGGAACGCTGCTGAAGTTCGTCATGG 540
Query 538 CAGGACGCTTACTTCGCATGAAGATTTGCAGAAATGTCT-AACCGCCATTAAGGATAACG 596
|||||| |||| |||||||||||| ||||||||||||| ||| ||||| ||||||||||
Sbjct 541 CAGGACATTTACATCGCATGAAGATCTGCAGAAATGTCTGAAC-GCCATCAAGGATAACG 599
Query 597 CGTTTCATGTGTCTGACTATCCAGTCATCATCACTCTCGAAGATCATTTGCCACCCAAGC 656
||||| | |||||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 600 CGTTTTACGTGTCTGACTATCCAGTCGTGATCACTCTCGAAGATCATTTGCCACCCAATC 659
Query 657 TTCAAGCGCAAGTTGCTAAGATGTTAACTAAAACATACAGAGGGATGCTGTTTCGTCGTG 716
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||
Sbjct 660 TTCAAGCGCAAGTTGCTAGGATGTTAACTAAAACATTCAGAGGGATGCTGTTTCGTTGTG 719
Query 717 TCTCAGAGAGTTTTAAGCATTTTCCATCACCAGAAGAACTTAAGGGGAAGATCCTGATCT 776
||||||||||| |||||||||||||||||||||||||||||| |||||| || ||||
Sbjct 720 GCTCAGAGAGTTGGAAGCATTTTCCATCACCAGAAGAACTTAAGAAGAAGATTCTCATCT 779
Query 777 CTACGAAGCCTCCAAAGGAGTATCTTGAGAGCAAAACTGTACACACCACAAGAACTCCAA 836
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 780 CTACGAAGCCTCCAAAGGAGTATCTTGAGAGCAAAACTGTACAGACAACAAGAACTCCTA 839
Query 837 CGGTTAAAGAGACTTCGTGGAACAGAGTAGCGA 869
|||||||||||||||||||| |||||||||||
Sbjct 840 TGGTTAAAGAGACTTCGTGGAGCAGAGTAGCGA 872
> Ahg495989 jgi|Araly1|495989|fgenesh2_kg.8__1805__AT5G58670.1
Length=1737
Score = 435 bits (235), Expect = 7e-121
Identities = 1254/1720 (73%), Gaps = 173/1720 (10%)
Strand=Plus/Plus
Query 47 TTCAAAGTGTGCTTCTGTTGCAG-CAGAAGCTTTAAGGAGAAAACGAG-GCAGCCACCAG 104
||||||||||| |||||||| | |||||||| |||| |||| | || | |||||||
Sbjct 58 TTCAAAGTGTGTTTCTGTTG-TGTAAGAAGCTTCAAGGTGAAATCAAGTG-AGCCACC-- 113
Query 105 TG-AG-CATCAAGAGA-CTCTTCGAAGCTTA--CTCAAGAAACGGCAAGATGTCTTTC-G 158
|| || ||||||| | || ||| | | ||| |||||| ||| || |||||| | | |
Sbjct 114 TGAAGAAATCAAGA-ACCTTTTCCATGATTACTCTCAAG--ACGACAGGATGTC-TGCTG 169
Query 159 ATGAGCTTCTAAGATTTGTGAGT-GAAGTCCAAGGAG-AACGGCACGCAGGGT-TGGACT 215
| ||| | || |||||||||| | |||| ||||||| ||| ||||| | | | |||
Sbjct 170 ACGAGATGCTCAGATTTGTGA-TCCAAGTTCAAGGAGAAAC-ACACGC-TGATATAAACT 226
Query 216 ACGTGCAA-GATATCTTCCACAG-CGTTAAACACCACAACGTTTTTCATCAC-CATGGAC 272
|||| ||| |||||||||||||| | ||||||| ||| |||||| |||| | | |||||
Sbjct 227 ACGT-CAAGGATATCTTCCACAGAC-TTAAACATCACGGCGTTTTCCATC-CTCGTGGAC 283
Query 273 TTGTTCATC-TCAACGCCTTCTATCGCTACCT-CTTCAGCGATACCAACTCTCCTCTT-C 329
|||||| | || | ||||| || || || ||| || ||| |||||||||| || |
Sbjct 284 ---TTCATCTTGAA-GGATTCTACCGTTATCTCCTT-AGTGATTTCAACTCTCCT-TTGC 337
Query 330 CCATGTCTGGCCAGGTGCATCATGACATGAAGGC-GCCGTTATCGCATTACTT-TGTGTA 387
| || | || |||| || || ||||| | ||| |||||||||||||| | ||||
Sbjct 338 CTGTGACCCGCGAGGTTTGGCAAGATATGAA-TCAGCCTTTATCGCATTACTTCT-TGTA 395
Query 388 CACGGGACATAACTCTTACTTGACTGGGAACCAAGT-GAACAGCAGAAGCAGCGTAGAAC 446
|||||||||||||||||||||||||||||| || || |||||| | ||||||| | ||||
Sbjct 396 CACGGGACATAACTCTTACTTGACTGGGAATCA-GTTGAACAGTAAAAGCAGCATCGAAC 454
Query 447 CGATCGTGCAGGCTCTCAGAAAAGGCGTAAAAGTGATCGAGCTCGACTTATGGCCTAA-T 505
|||| ||| | ||||| |||| ||| || ||||| ||||| || ||||||||||| |
Sbjct 455 CGATTGTGAAAGCTCTGAGAAGAGGAGTTCGTGTGATTGAGCTTGATTTATGGCCTAACT 514
Query 506 CCTTCAGGGAACGCTGCTGAAGTTCGTCATGGCAGGACGCTTA-C---TTCGCATGAAGA 561
| |||||| || | |||||||||||||| ||| |||| ||| | || | ||||||
Sbjct 515 C-TTCAGGAAAAGAAGCTGAAGTTCGTCACGGCGGGACA-TTAACGAGTT-G--TGAAGA 569
Query 562 TTTGCAGAAATGTCT-AACCGCCATTAAGGATAACGCGTTTCATGTGTCTGACT-ATCCA 619
| ||||||||||||| ||| || ||||||| ||||| ||||| ||||||| || ||||
Sbjct 570 TCTGCAGAAATGTCTTAAC-GCGGTTAAGGAGAACGCTTTTCAGGTGTCTG-CTTATCCT 627
Query 620 GTCAT-CATCACTCTCGAAGATCATTTGCCACCCAAGCTTCA-AGCGCAAGTTGCTAAGA 677
|| | | | ||| | ||||| ||||| | || || ||||| | | |||| |||||||
Sbjct 628 GTTGTGCTT-ACTTTAGAAGACCATTTAACTCCAAATCTTCAGAA-GAAAGTCGCTAAGA 685
Query 678 TGTTAACTAAAACATACAGAGGGATGC-T-GTTTCGTCGTGTCTCAGA-GAGTTTT-A-A 732
|| | | ||| || | |||| || | | ||||| ||| | || || | | | |
Sbjct 686 TGGTGAGTAAGACGTTTGGAGG-AT-CATTGTTTCAA--TGTA-CGGACGAATATACAGA 740
Query 733 GCATTTTCCATCACCAGAAGAACTTAAGGGGAAGATCCTGATCTCTACGAAGCCTCCAAA 792
| |||||| ||||||||| ||| ||| ||||| |||||||||| ||||| |||||
Sbjct 741 GTGTTTTCCTTCACCAGAATCACTCAAGAATAAGATTTTGATCTCTACAAAGCCACCAAA 800
Query 793 GGAGTATCTTGAGAGCAAAA-CTGTACA-----CACCA-CA-A-GAACTCCA--ACGGTT 841
||||||||| ||| | || || | || || || | | ||| |||| | | |
Sbjct 801 AGAGTATCTTCAGACCCAAGTCTCT-CAAGGTTCAACAACGGATGAA-TCCATTAAAGCT 858
Query 842 AAAGAGACTTCGTGGAA-CAGAGTAGCGAACAAGATTCTTGAAGAATATAAAGATATGGA 900
||| | | || | || |||| || |||| | ||| |||||| || || |||
Sbjct 859 AAAAAAA-TT-GCAGATGCAGA--AG--AACAGG-TTCAAGAAGAAGAT---GA---GGA 905
Query 901 GAGTGAAGCTG-TAGGATATAGAGACTTGATAGCAATCCACGCTGCAAACTGCAAAG-AT 958
||||| ||| | | | ||| |||||||| || | || ||||||| |||| |||||| |
Sbjct 906 GAGTGTAGC-GATCGAATACAGAGACTTAATCTCGATTCACGCTGGAAACCGCAAAGGAG 964
Query 959 CCTTCAAAGGATTGCTTGAGTG-ATGATCC-AGA--GAAGCCTATACGGGTCAGCATG-G 1013
|| || | | ||||||| || | ||||| | | || | | ||||| | |||||| |
Sbjct 965 GATTGAA-GAACTGCTTGAATGGA-GATCCTA-ATCGA-GTC-ATACGTTTAAGCATGAG 1019
Query 1014 ACGAGCAGTGGCTAGACACTATGGTTAGGACCAGAGGAACGGATCTT-GTCAGGTTTACA 1072
||||||||||| || ||| ||| || ||| | ||| | ||| || || | ||| ||
Sbjct 1020 T-GAGCAGTGGCTTGAAACTTTGGCTAAAACCCGTGGATCTGAT-TTAGTAAAGTTCACG 1077
Query 1073 CAGAGGAATCTGGTGAGGATATATCCAAAGGGCA-CAAGAGTG-GACTCGTCAAACTACG 1130
||| ||||||| | ||||||| ||| ||| || || | || |||||||| ||||| |
Sbjct 1078 CAGCGGAATCTTCTCAGGATATTTCCCAAGA-CAACACG-GTTCGACTCGTCTAACTATG 1135
Query 1131 ATCCTCAT-GTTGGGTGGACACACGGTGCTCAAATGGTTGCTTTTAACATGCAAGGACAT 1189
|||||| | ||||| |||| || ||||||||||||||||| || || |||||| | |||
Sbjct 1136 ATCCTC-TCGTTGGATGGATTCATGGTGCTCAAATGGTTGCCTTCAATATGCAAAGTCAT 1194
Query 1190 GGGAAGCAACTATGGATAATGCAAGGAATGTTCAGGGGGAATGGTGGATGTGGGTACGTT 1249
|||| | | ||||||| ||||||||| |||| | | |||||||||||||| || ||
Sbjct 1195 GGGAGGTATTTATGGATGATGCAAGGATTGTTTAAAGCCAATGGTGGATGTGGCTATGTG 1254
Query 1250 AAAAAGCCTCGCATCTT--GCT----A--GA-C--G-AGCACACACTCTTCGACCC-T-T 1295
||||||||| | || || ||| | | | | || | | |||| ||||| | |
Sbjct 1255 AAAAAGCCT-G-ATGTTTTGCTTTCCAATGGTCCTGGAGGTGAAA-TCTTTGACCCATGT 1311
Query 1296 -G-CAAAAGGTTTCCC-ATTAAGACCACTCTTAAGGTTAAGATTTACACTGGCGAAGGAT 1352
| ||||| | ||| || ||||| ||||||||||| ||||| |||||||| ||||| |
Sbjct 1312 AGTCAAAACCT--CCCGATCAAGACTACTCTTAAGGTGAAGATCTACACTGGAGAAGGTT 1369
Query 1353 GGGATTTGGATTT-CCATCATACACACTTTGATCAATACTCTCCTCCAGATTTCT-T-C- 1408
|| || ||||||| || | | | |||||||||| |||||||||||| ||||||| | |
Sbjct 1370 GGAATATGGATTTTCCTTTAGAT-CACTTTGATCGATACTCTCCTCCTGATTTCTATGCA 1428
Query 1409 --GTCAAGATT-GGAATAGCAGGAGTACCGAGAG-ACACGGTCTCA-T-ACAGAACGGAA 1462
| ||||| | ||||| ||||| || || | | |||| | | | | ||||||| |||
Sbjct 1429 AAGGCAAGAGTCGGAATCGCAGGGGTTCC-ATTGGACACAG-CA-AGTTACAGAACAGAA 1485
Query 1463 ACAGCTGTC-GATC-AGTGGTTTCCTATATGGGGCAACGACGAGTTCCTGTTTC-AGCTG 1519
| || | | || | | |||||||| || |||| ||| | |||||| ||| | | ||
Sbjct 1486 ATAGATA-CAGA-CGAATGGTTTCCGATTTGGGACAA-G--GAGTTCGAGTTCCCAT-TG 1539
Query 1520 TC-TGTTCCAGAACTGGCGCTTCTGTGGT-TCAAAGTCCAAGACTACGACAATGACACCC 1577
| |||||| || | || ||||||| | ||| |||| |||||||||||| | |||| |
Sbjct 1540 -CGTGTTCCTGAGTTAGCTATTCTGTG-TATCACAGTCAAAGACTACGACAGTAACACTC 1597
Query 1578 AGAATGATTTCGCAGGACAGACATGTCTTCCTCTGCCGGAACTGAAGTCCGGAGT-TA-G 1635
|||| |||||||| || |||||||||||||| ||| |||| | | | |||| || | |
Sbjct 1598 AGAACGATTTCGCTGGCCAGACATGTCTTCCGCTGTCGGAGGTCAGG-CCGG-GTATTCG 1655
Query 1636 AGCCGTCCGGCTTCACGATCGAACAGGCAAGGCCTACAAG 1675
||||||||||| || ||||| | || ||| |||||||
Sbjct 1656 TGCCGTCCGGCTCCATGATCGTGCCGGGGAGGTCTACAAG 1695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68181538550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5