BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38545.1
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490619 jgi|Araly1|490619|fgenesh2_kg.7__52__AT4G38540.1 383 2e-105
Ahg887647 jgi|Araly1|887647|Al_scaffold_0020_7 165 7e-40
> Ahg490619 jgi|Araly1|490619|fgenesh2_kg.7__52__AT4G38540.1
Length=1295
Score = 383 bits (207), Expect = 2e-105
Identities = 231/243 (95%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 281 AGACTCTTTGCCTTTATCGCTTCACCTAGACAACGAGCAAGGATAACTCCATCCTCCATG 340
||| ||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1017 AGATTCTTTGCTTTTATCGCTTCACCTAGACAACGAGCGAGGATGACTCCATCCTCCATT 958
Query 341 GCTGAGCAACCTCCTTGTCCGATATCAGGAGTCATTGGGTGAAGTGCATCTCCTGCAACG 400
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 957 GCTGAGCAACCCCCTTGTCCGATATCAGGAGTCATTGGGTGAAGTGCATCCCCTGCAACG 898
Query 401 CACACGTTGTCTTTTGTGATGTTTGACCATAGCAGTTCCCATGGAGGTCGGTACTTCAGT 460
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 897 CACACATTGTCTTTTGTGATGTTTGACCAGAGCAGTTCCCATGGAGGCCGGTACTTCAGT 838
Query 461 TGAGACATCACCATGCTATCAAGATCAGTGGTCTCCACCACATTCTTAATGTTTTCAGGC 520
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 837 CGAGACATCACCATGCTATCAAGATCGGTGGTCTCCACCACATTCTTAATGTTTTCAGGC 778
Query 521 AAG 523
|||
Sbjct 777 AAG 775
Score = 209 bits (113), Expect = 3e-53
Identities = 140/153 (92%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 681 CCTTCAAGGCGATCATGGAGACTGCGAATATGCTGAGAAACGCCGAGAGCTTCCATGGCC 740
|||| ||| |||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 264 CCTTGAAGACGATCATGGAGACTGCGAATATGCTGAGCAACGTCGAGAGCTTCCATGGCC 205
Query 741 TTCCAAGCATTGAACCAAGTGGTAA-ATGCAAATCCTGTCGCTCTCAGTGTCTCCGAAGA 799
|||||||||||||| |||| |||| | ||||| ||||||||||||||| |||| |||||
Sbjct 204 TTCCAAGCATTGAAATAAGTCGTAAGA-GCAAACCCTGTCGCTCTCAGTTTCTCTGAAGA 146
Query 800 TTCCAGCACCATGCTTCTGATCCCAAGCCTGTG 832
||||||||||||||| |||||||||||||||||
Sbjct 145 TTCCAGCACCATGCTCCTGATCCCAAGCCTGTG 113
Score = 180 bits (97), Expect = 2e-44
Identities = 111/118 (94%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 895 CCTGTGTAGTCCAACAGCGGTGGAAAGGCCGGAGATACCGGCGCCAACGATGATGATATC 954
|||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| |
Sbjct 118 CCTGTGTAGTCCAACAGCTGTGGAAAGCCCGGAGATTCCGGCGCCGACGATGATGATGCC 59
Query 955 TGGGCTGCCTTCTTCTTCCATGGTGCGTTGATGATCTTAGAAAGAAAGCTCTGTTTTT 1012
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TGGGGTGCCTTCTTCTTCCATGGTGCGTTGATGATCTTAGAAAGAAAGCTCTGTTTTT 1
> Ahg887647 jgi|Araly1|887647|Al_scaffold_0020_7
Length=318
Score = 165 bits (89), Expect = 7e-40
Identities = 166/200 (83%), Gaps = 17/200 (9%)
Strand=Plus/Minus
Query 529 GAAA-CATACTCGGATTCTGGAAACAGCATCTCTGTGGGA-GGAGTTCCTGCAGAAA-TT 585
|||| |||| ||||||||||||||| ||||||| ||| | ||| || ||||||||| ||
Sbjct 273 GAAATCATA--CGGATTCTGGAAACAACATCTCTTTGGAAGGGA-TTTCTGCAGAAATTT 217
Query 586 GTTCCAA-CCACCCATCTGCAGCAAAATCAAAGATGAGTCCCCTTTTTTACTGAGCTGAT 644
| | ||| ||||||||||||| ||| |||| |||||| | ||| | |||| | || | |
Sbjct 216 G-T-CAACCCACCCATCTGCATCAAGATCAGAGATGACTTCCC-TGTTTA-T-AG-AG-T 164
Query 645 -TATATATGAATAGTAATAATAGTGTTAGTTTGATACCCTTCAAGGCGATCATGGAGACT 703
|| |||||||| | |||| | |||||||||||||||||| ||| ||||||||||||||
Sbjct 163 CGAT-TATGAATACTGATAA-AATGTTAGTTTGATACCCTTGAAGACGATCATGGAGACT 106
Query 704 GCGAATATGCTGAGAAACGC 723
||||||||||||||||||||
Sbjct 105 GCGAATATGCTGAGAAACGC 86
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5