BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38550.1
Length=2251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943817 jgi|Araly1|943817|scaffold_700046.1 2865 0.0
> Ahg943817 jgi|Araly1|943817|scaffold_700046.1
Length=1895
Score = 2865 bits (1551), Expect = 0.0
Identities = 1765/1867 (95%), Gaps = 19/1867 (1%)
Strand=Plus/Plus
Query 148 CTCAACCCAATATGGACTTCTTCACTTCAAGCAAAGCTAAGAAAGATAGCAAAAAATCAT 207
||| |||||| |||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 11 CTCCACCCAACATGGACTTCTTCACTTCAAGCAAAGCTAAGAAAGATGGCAAAAGATCAT 70
Query 208 CAGGACTCTTTGGCAAGAAAACTGTCAGCAAGAGCACTCCGGGCAGCCCTGCTCATCCCC 267
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 CAGGACTCTTTGGCAAGAAAACTGTCAGCAAGAGCACTCCGGGCAGCCCTGCTCATCCCT 130
Query 268 CCGGCGCTAGATCCCCGCCCCCATCGTATCTTTCAAACAAAAGAGCCGAAACAGAGTACG 327
|||| |||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 131 CCGGTGCTAGATCCCCGCCACCATCGTATCTCTCCAACAAAAGAGCCGAAACAGAGTACG 190
Query 328 ATTTCCCCATGTCCAATGAACAAAGACCATACTGGAAACAGCCTGCCTCTGAACGCGTCC 387
||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 191 ATTTCCCCACCTCCGATGAACAAAGACCCTACTGGAAACAGCCTGCCTCTGAACGCGTCC 250
Query 388 CCAACTCCCACCCTAGGCCTCCCGTGTATGGATACGGCACGCCCGACCATCGTCGAGACC 447
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 251 CCAACTCCCACCCTAGGCCTCCCGTGTATGGATACGGCACGCCCGAGCGTCGTCGAGACC 310
Query 448 ACGGTAGAGAAAGAATGGAGGCCATGAGTTATGAGCCAGAGACCAACGCTCCTTCCAGCC 507
|||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 311 ACGGTAGAGACAGAATGGACGCGATGAGTTATGAGCCAGAGACCAACGCTCCTTCCAGCC 370
Query 508 CATATCATCCAGCTGGAAACCGCACGCCTGAACGTCCTAGGAAATCAACCGAGTATCGTC 567
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 371 CATTTCATCCAGCTGGAAACCGCACGCCTGAACGTCCTAGGAGATCAACCGAGTATCGTC 430
Query 568 GAGAACACCAGGATCGAATGTATGAAGCAGATACCCGAAGCAATGCGAGCCCATTTCACC 627
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 431 GAGAACACCAGGATCGAATGTATGAAGCAGATACCCGAAGCAATGCAAGCCCATTTCACC 490
Query 628 CATTCAGAAGCCCTTCTCCATCTCCATTCCACACGCCTGATCG-C-C---G----C---A 675
||||||||||||||||||||||||||| ||| ||||||||||| | | | | |
Sbjct 491 CATTCAGAAGCCCTTCTCCATCTCCATACCAAACGCCTGATCGCCGCAGAGACCACGATA 550
Query 676 GAGACCACTACGA--C-ATGTATGAGCCTGAGGCCAACACCATGCTGCAGAATAGCGCTC 732
||||||||||||| | ||||| || |||||||||||||| ||||||||||||||||||
Sbjct 551 GAGACCACTACGACGCAATGTACGAACCTGAGGCCAACACTTTGCTGCAGAATAGCGCTC 610
Query 733 CAGGGAGCCCATTCCATCCAGCTGGAAGCCGCTCTCCACCACCATACAGAACGCCTGATC 792
| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 611 CGGGGAGCCCATTTCATCCAGCTGGAAGCCGCTCTCCACCGTCATACAGAACGCCTGATC 670
Query 793 GTCGTAGTAACT-ATGATAAAGAGCAATTTGAGGACCTGTACGAGCAAGATGGTGATGTC 851
| |||||||| | ||| ||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 671 GCCGTAGTAA-TCATGGTAAAGAGCAATATGAGGACCTGTACGACCAAGATGGTGATGTT 729
Query 852 ACACCGCGAAACAGCTCTCCACCGAGCCCGTTTCATCCAGCAGCATACAAAACGTCTGAT 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 ACACCGCGAAACAGCTCTCCACCGAGCCCGTTTCATCCAGCAGCATACAAAACGTCTGAT 789
Query 912 CAACGTAGTAACCATGGTAAAGAGCAAATTGAGGACTTTTATGAGCAAGATGACGATGTA 971
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 790 CAACGTAGTAACCATGGTAAAGAGCAAATTGAGGACTTTTATGAGCCAGATGATGATGTA 849
Query 972 ACACCACGAAACAGCTCTCCACCTAGCCCATTGCATCCAGCAGCAAGCCATTCACCACCA 1031
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 850 ACACCGCGAAACAGCTCTCCACCTAGCCCATTGCATCCAGCAGCAAGCCGTTCACCACCA 909
Query 1032 CCACCACAACCATACAGAACGCCTGACCATCGTAGAAGCCACCAGGATAACGAGGATTTC 1091
|||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |||
Sbjct 910 CCACCACAACCATACAGAACGCCTGACCGTCGTAGAAGTCACCAGGATAATGAGGAATTC 969
Query 1092 GAGGCAATGTATGAGCTAGATGGCGACTTAATACAC-CAGAAGAGCGCTCCTCCGAGTCC 1150
||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||
Sbjct 970 GAGGCAATGTATGAGCTAGATGGCGACGTAATAC-CGCAGAACAGCGCTCCTCCGAGTCC 1028
Query 1151 CGTTCATGGACCATACTATTCATCCAGCGACGACGATAATCACTCCACCTACCTCTATCC 1210
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1029 AGTTCGTGGACCATACTATTCATCCAGCGACGACGATAACCACTCCACCTACCTCTATCC 1088
Query 1211 AGAAATCCGCAGCCCACTTCGTTCCAGGATCGTATCCGAGAACAGCACGCCTGTTCACCA 1270
||||||||| |||||||| ||||||||| ||||||| |||||||||||||| || |||||
Sbjct 1089 AGAAATCCGTAGCCCACTACGTTCCAGGCTCGTATCAGAGAACAGCACGCCGGTGCACCA 1148
Query 1271 CAACTACCAGATAGTTGCGGCCGAGACCTATGAGCAAGACAAGCAGTTCGAGCCGCCGGA 1330
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1149 CAACTACCAGATAGTTGCGGCCGAAAGCTATGAGCAAGACAAGCAGTTCGAGCCGCCGGA 1208
Query 1331 GCTGCCTGACGAGTCACAAAGCTTCACAATGCAGGAGATTACCAAAATGCGAGGACTCAA 1390
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1209 GCTGCCTGACGAGTCACAGAGCTTCACAATGCAAGAGATTACCAAAATGCGAGGACTCAA 1268
Query 1391 GAACTACGAAAGCGGCAAGGAAGAGAGTCAATCAATGATATCCGAGGCTTACGTATCCGT 1450
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1269 GAACTACGAAAGCGGCAAGGAAGAGAATCAATCAATGATATCCGAGGCTTACGTATCCGT 1328
Query 1451 CGCGAATTACAGAGTGAGGCAGAGCGTGTCGGAAACCCTGCAGGCGATCATCGACAAGCA 1510
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 CGCGAACTATAGAGTGAGGCAGAGCGTGTCGGAAACCCTGCAGGCGATCATCGACAAGCA 1388
Query 1511 CGGCGACATCGCAGCCTCCTCGAAGCTGCAAGCAATGGCAACTCGGTCTTATTACCTGGA 1570
||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1389 CGGAGACATCGCCGCCACCTCGAAGCTGCAAGCAATGGCAACTCGGTCGTATTACCTGGA 1448
Query 1571 ATCCCTAGCCGCTGTGGTGATGGAGCTGAAAAAGACGGTTCTGAGGGATTTGACGAAAAC 1630
|||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1449 ATCCCTAGCCGCGGTGGTGATGGAGCTGAAGAAGACGGTTCTGAGGGATCTGACGAAAAC 1508
Query 1631 GCGCGTGGCGGAGATCGCGGCGGTGGTGAAAGACATGGAGTCGGTGAAAATCAACGTGTC 1690
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 GCGCGTGGCGGAGATGGCGGCGGTGGTGAAAGACATGGAGTCGGTGAAAATCAACGTGTC 1568
Query 1691 GTGGCTAAAGACAGCGGTAACGGAACTGGCGGAGGCGGTGGAGTATTTCGGGCAGTACGA 1750
|||||| ||||||||||| |||| ||||||||||| |||||||| ||||||||||||||
Sbjct 1569 GTGGCTGAAGACAGCGGTGGCGGAGCTGGCGGAGGCAGTGGAGTACTTCGGGCAGTACGA 1628
Query 1751 CACGGCGAAGGTGGAGAAAGAGGTGTGCGAGAGAGATCTGACGGCGAAAAAGGGGGAGAT 1810
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1629 CACGGCGAAGGTGGAGAAAGAGGTGTGCGAGAGAGATCTGACGGCGAAGAAGGGGGAGAT 1688
Query 1811 GGAGGAGATGACGGCGGAGCTGGTGAAGAGGGAGAAGGAAATCAAAGAATGCAGAGAGAA 1870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 GGAGGAGATGACGGCGGAGCTGGTGAAGAGGGAGAAGGAAATCAAAGAATGCAGAGAGAA 1748
Query 1871 GGTGACGGTGGTCGCAGGGAGGCTAGGGCAGCTGGAGATGAAAGGTTCGAAATTGAACAA 1930
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 GGTGACGGTGGTGGCGGGGAGGCTAGGGCAGCTGGAGATGAAAGGTTCGAAATTGAACAA 1808
Query 1931 GAATCTCGACCTCTTCCAGTCCAAAGTCCACAAATTCCAAGGAGAAGCCGTCCTTCTCCA 1990
||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1809 GAATCTCGACCTCTTTCAATCCAAAGTCCACAAATTCCAAGGACAAGCCGTCCTTCTCCA 1868
Query 1991 CCTTTAG 1997
| |||||
Sbjct 1869 CGTTTAG 1875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84750795125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5