BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38560.2
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327813 jgi|Araly1|327813|fgenesh1_pm.C_scaffold_7000040 2230 0.0
> Ahg327813 jgi|Araly1|327813|fgenesh1_pm.C_scaffold_7000040
Length=1563
Score = 2230 bits (1207), Expect = 0.0
Identities = 1458/1578 (92%), Gaps = 21/1578 (1%)
Strand=Plus/Plus
Query 78 ATGTCTGGAATAGTACATCATGATTGTCCTAACTCAGGAAATCCCTACCACGAGTGCCAC 137
|||||||||| |||||||||||||||||| ||||||| |||||||||||| |||||| |
Sbjct 1 ATGTCTGGAAAAGTACATCATGATTGTCCCAACTCAGCAAATCCCTACCATGAGTGCAAT 60
Query 138 GATCAGTGTTTCAAGAGAATAAGCTCCGGAGATGTCCCCAAGAAGGAGAAA-AAACGGTT 196
|||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||||
Sbjct 61 GATCAGTGTTTCAAGAGAATAAGCTCTGGAGATGTCCCCAAAAAGGA-AAAGAAACGGTT 119
Query 197 TGGCTTTGGTAAACCAGCTTGTAGCAAGGAAACGCCTCTTACCAGTCCGGTTCGTGTTAT 256
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 120 TGGCTTTGGTAAACCAGCTTGTAGCAAGGAAACGCCTCCTACCAGTCCGGCTCGTGTTAT 179
Query 257 TGCGGGAAACAGATCACCACTTCCGAGTTATTACGGAAAAAGAATGGATGAGTCAGACGA 316
||||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct 180 TGCGGGAAACAGATCGCCACTTCCGAGTTATTACGGAAAGAGAATGCTTGAATCAGACGA 239
Query 317 GTCCCCCTCCTTCTCTTCCTCCGATGACTCTTTCAATGCAAACTTGCCCACACCACGTTC 376
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTCTCCCTCCTTCTCTTCCTCCGATGACTCTTTCAATGCAAACTTGCCCACACCACGTTC 299
Query 377 CACTTT-ACATGGGAACGAAACTGCCCCGGGAATCAATTGGCTCCCCATGTCGCCTTCTT 435
|||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 300 T-CTTTTACATGGGAACGAAACTGCCTCAGGAATCAATTGGCTCCCCATGTCGCCTTCTT 358
Query 436 TCGCTGTGTATTGCAAGAAA-GATTGTTTCTCATCAAGGATCGATCACCGTGAAGGTGAA 494
|||||||||||||||| ||| |||| |||| |||||| ||| ||||||| ||||||||||
Sbjct 359 TCGCTGTGTATTGCAA-AAACGATTCTTTCGCATCAACGATTGATCACCTTGAAGGTGAA 417
Query 495 GCTCCAATTCTTGATGAAATGCCATCTAAGACTCGGCTTAAGACACCTCTAAGTCCTGAT 554
||||||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 418 ACTCCAATTCATGATGAAATGTTATCTAAGACTCGGCTTAAGACGCCTCTAAGCCCTGAT 477
Query 555 ACTAGGCCAAGGAAATCAGAACACAGGACAAGAAACCAAGGACCACGCTCAAAGACTCCA 614
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 ACTAGGCCAAGGACTTCAGAACACAGGACAAGAAACCAAGGACCACGGTCAAAGACTCCA 537
Query 615 GAACCTAGAGGAAGTTACCTTGAACCACCCAGGTCTAGGATCCCACAAACTCAGCCGGTA 674
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 538 GAACCTAGAGGAAGTTACCTTGAACCACCCAGGCCTAGGATCCCACAAACTCAGCCGGTA 597
Query 675 CCACACAGATCCCTTGAAAGTGCTGGTCTCAAATCACCTCAGAAAGGTGAAACTCGGCCT 734
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 598 CAACACAGATCCCTTGAAAGTGCTGGCCTCAAATCACCTCAGAAAGTTGAAACTCGGCCT 657
Query 735 CATATCCCCCAAACTCAGCCAACATCCTTCAACATCGGTGGTAACTATCATTACGCTGCT 794
|| |||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 658 CAGATCCCCCAAACTCAACCGACATCCTTCAACATCGGTGGTAACTATCATTATGCTGCT 717
Query 795 CAAGCATCCAAATA-TCATGCTAATAAAGCGGATTCAGTGTACACTAAAGAC-AGAGACA 852
|||||||||||||| | ||| ||||||||||||||| ||||||||||||||| | |||||
Sbjct 718 CAAGCATCCAAATACT-ATGGTAATAAAGCGGATTCGGTGTACACTAAAGACCA-AGACA 775
Query 853 AATGCGTTATACTTTATCCCGATATTCTTTTGTCCCCTC-AAGAAAATCTGACATCAAGA 911
||||| || |||| |||||||| |||||||||||||||| || |||||| |||||| |||
Sbjct 776 AATGCATTCTACTCTATCCCGAAATTCTTTTGTCCCCTCGAA-AAAATCCGACATCGAGA 834
Query 912 TCCATTACGGTATTGATGCTTCCCCAAAAATCCCGTACACCACTAGACAAACAATCGAAG 971
|||||||||||| ||||||||| ||||||||| || ||||| ||||||| ||
Sbjct 835 TCCATTACGGTACTGATGCTTCACCAAAAATC----AC-----TAGACCAACAATCAAAT 885
Query 972 GAGCCATTACAGCTGCCTGTCGAATGCCATAGCTTTACTCCATCTGAGATCGAATGCATG 1031
|||||| | ||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct 886 GAGCCACCAGAGCTGCCTGACGAATGCCAGAGCTTTACTCTATCTGAGATCGAATGCATG 945
Query 1032 AAAGCGTTAAAGATTTACGAAACAGGAGAGGAAATGAAGTCAATGATTTCAGAGTCGTAT 1091
|||| ||||||||| ||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct 946 AAAGGGTTAAAGATCTACGAAACAGGGGAGGAAATGGAGTCAATGATTCCAGAGTCGTAT 1005
Query 1092 GTCTCTGTAGGAAGCTACAAGGTCAGAGCGAGCGTCTCGTCCACTCTGCAGAAAATCCTG 1151
|||| ||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1006 GTCTATGTAGGAAGGTACAAGGTCAGAGCCAGCGTCTCGGCCACTCTGCAGAAAATCCTG 1065
Query 1152 GACAAGCATGGAGACATAGCGTCCGGTTCCAAACTTCAGTCACTGCGCACAAAATCTTAC 1211
||||||||||| ||||||||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 1066 GACAAGCATGGTGACATAGCGTCCGGTTCCAAACTTCAGTCGCTGCCCACGAAATCTTAC 1125
Query 1212 TCGCTTGAGACTCTAGCCGCGGTGGTTCTTGAACTCCAATCGACGCCCCTGAAGAAATTG 1271
|||||||| || |||||||| |||||||||||||||||||||||||| |||||| |||||
Sbjct 1126 TCGCTTGAAACGCTAGCCGCAGTGGTTCTTGAACTCCAATCGACGCCACTGAAGGAATTG 1185
Query 1272 AAGCAGGCACGCGTGTTGGAAATGCTATCGGTTGTTATAGACGCAGAGTCTGTTAAAATC 1331
||| || | || || |||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 1186 AAGGAGACTCGGGTCTTGGAAATGCTATCTGTTGTTACAGACGCAGAGTCGGTTAAAATC 1245
Query 1332 AGAGCTGGTTGGCTCAGGGAGATCCTGAACGAGATTCTTGAAGCGGCCCACCACTATGAT 1391
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1246 AGAGCTGGTTGGCTCAGGGAGATCCTGAACGAAATTCTTGAAGCGGCCAACCACTATGAT 1305
Query 1392 GGACACGAGACAACGGTGGTGGAGAAGGAAGGGCGTGAACGGGATATGCTGCTTGAAAGA 1451
||||||||||||||||||||||||||||||| |||||| | |||||||||| ||||||||
Sbjct 1306 GGACACGAGACAACGGTGGTGGAGAAGGAAGCGCGTGAGCTGGATATGCTGTTTGAAAGA 1365
Query 1452 GAAGAAATGAAGAAGATACAGGAGGAGGTGAGATTGAAGGAGAAGGAGGCAAAGGACTTT 1511
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1366 GAAGAAATGGAGAAGATACAGGAGGAGGTGAGATTGAAGGAGAAGGAGGCGAAGGACTTC 1425
Query 1512 CGTAAAGGAGTCATGGAAATGGCAGGGCGTTTGGGAGAACTGAAGATGAAGCGAGCGCGT 1571
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1426 CGTAAAGGAGTCATGGAAATGGCAGGGCGTTTGGGAGAACTGGAGATGAAGCGAGCGCGT 1485
Query 1572 TTGGAGAAACGCTTGGCGTTTCTGAGCTCCAAGGTGGAAAAGTTTGAGGGGGAATCTTTG 1631
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1486 TTGGAGAAACGCTTAGCGTTTCTGAGCTCCAAGGTGGAAAAGTTTGAGGGGGAATCTCTG 1545
Query 1632 TTAGAGAACGTCTTTTGA 1649
|| |||||||||||||||
Sbjct 1546 TTGGAGAACGTCTTTTGA 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67229282425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5