BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38570.1
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490623 jgi|Araly1|490623|fgenesh2_kg.7__56__AT4G38570.1 797 0.0
Ahg475923 jgi|Araly1|475923|fgenesh2_kg.2__1053__AT1G68000.1 684 0.0
> Ahg490623 jgi|Araly1|490623|fgenesh2_kg.7__56__AT4G38570.1
Length=824
Score = 797 bits (431), Expect = 0.0
Identities = 548/599 (91%), Gaps = 29/599 (5%)
Strand=Plus/Plus
Query 517 CAGATAGAGTCAGCACAGCCTGTCTTCTCGTGATTCTCTCCCAGATATACAGGCCTAGCT 576
|||| | |||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CAGAGA-AGTCAGTACTGCCTGTCTTCTCGTGATTCTCTCCCAGATATACAGGCCTAGCT 307
Query 577 TGGTTTTCCTGTCATTGCTGGCTTTAGATATCGCTAGTCACTGGCTGCAAATGTACAGTA 636
||||||||||||||||||| ||| ||| | |||||||||||||||| ||||||||||| |
Sbjct 308 TGGTTTTCCTGTCATTGCTCGCTCTAGCTTTCGCTAGTCACTGGCTCCAAATGTACAG-A 366
Query 637 CCTTCCTATCAGGGAAGACCAGCCATAAGGATGTGAAAGATAGCACGAGCTGGCTCTTTA 696
| ||| | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 367 --AT--TAT------TG-CCAGCCACAAGGATGTGAAAGATAGCACGAGCTGGCTCTTTA 415
Query 697 GACTCTATTATGGAAACCGGATGTTCATGGGTTATTGCTGTGTTTCCTGCGAGGTTCTTT 756
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GACTCTACTATGGAAACCGGATGTTCATGGGTTATTGCTGTGTTTCCTGCGAGGTTCTTT 475
Query 757 ATATAATCCTTCTTCTCATAGCAACGAACCAAACCGAAAACTTGATGAACGTGGTAGTGA 816
|||||| ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 476 ATATAACCCTTCTTCTCATAGCAAAGAACCAAACCGAATACTTGACGAACGTGGTAGTGA 535
Query 817 AATCATTGATGCAGATTTCACCGCTCTCTTTACTCTTGGCTTTGAGCATATTTGGTTGGT 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AATCATTGATGCAGATTTCACCGCTCTCTTTACTCTTGGCTTTGAGCATATTTGGTTGGT 595
Query 877 CCATCAAGCAGATCATCAATGTGATTCAGATGAAAACGGCTGCAGATGTTTGTGTCCTGT 936
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CGATCAAGCAGATCATCAACGTGATTCAGATGAAAACGGCTGCAGATGTTTGTGTCCTGT 655
Query 937 ATGACATAGAGAAACAGCATAAGAAGCCTTGACGTTATGTGCCCGTGAATCGTGTTTAAC 996
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 656 ATGACATAGAGAAACAGCATAAGAAGCCTTGACGTTATGTGCCCATGAATCGTGTTTAAC 715
Query 997 TCTTTTGTTTCATGTTGTGTACGACACTGTACATACGGATCCATCTTGTTTAGT-----A 1051
|||||||||||||||||||||| | | || |||||||||||||||||| |
Sbjct 716 TCTTTTGTTTCATGTTGTGTAC-A---T--AC----GGATCCATCTTGTTTAGTGGTGGA 765
Query 1052 TGTAGATAAA-CTCTTGTCTTTAAATCCATTCACTATTTTCAGAAATTTCATGTCTTCT 1109
|||||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||
Sbjct 766 TGTAGATAAAACTCTTGTCTTTGAATGCATTCACTATTTTCACAAATTTCATGTCTTCT 824
Score = 287 bits (155), Expect = 1e-76
Identities = 169/176 (96%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 308 GGCGACGTTGTCAGTCTACCTCTACATTCCCAATATCGTTGGGTACATGAGAGTTCTCTT 367
||||||| | |||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 3 GGCGACGCTCTCAGTCTACCTCTACATTCCCAATATCGTTGGGTACATAATAGTTCTCTT 62
Query 368 GAACTGCATTGCCTTCTCTGTGTGCTTCTCCAACAAGACACTCTTCTCCCTCTTGTACTT 427
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 63 GAACTGCATTGCCTTCTCTGTGTGCTTCTCCAACAAGACACTCTTCTCGCTCTTGTACTT 122
Query 428 TTTCAGTTTTTGTTGTGATGCTGTGGATGGATGGTGCGCTCGTAAATTTAACCAAG 483
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 123 TTTCAGTTTTTGTTGTGATGCTGTCGATGGATGGTGCGCTCGTAAATTCAACCAAG 178
> Ahg475923 jgi|Araly1|475923|fgenesh2_kg.2__1053__AT1G68000.1
Length=1009
Score = 684 bits (370), Expect = 0.0
Identities = 577/675 (85%), Gaps = 21/675 (3%)
Strand=Plus/Plus
Query 303 AGACCGGCGACGTTGTCAGTCTACCTCTACATTCCCAATATCGTTGGGTACATGAGAGTT 362
||||| | || |||||| || || || || || || ||||| ||||||||||||||||||
Sbjct 226 AGACCCGAGAAGTTGTCTGTGTATCTTTATATACCTAATATTGTTGGGTACATGAGAGTT 285
Query 363 CTCTTGAACTGCATTGCCTTCT-CTGTGTGCTTCTCCAACAAGACACTCTTCTCCCTC-T 420
||||||||||| |||| || | ||||||| ||||||||||||||||| ||||| || |
Sbjct 286 CTCTTGAACTGTGTTGCTTT-TGCTGTGTGTTTCTCCAACAAGACACTTTTCTCGGTCCT 344
Query 421 TGTACTTT-TTCAGTTTTTGTTGTGATGCTGTGGATGGATGG-TGCGCTCGTAAATTTAA 478
| || ||| ||||| ||||||||||||||||||||||| ||| | |||||||| ||| ||
Sbjct 345 T-TA-TTTCTTCAGCTTTTGTTGTGATGCTGTGGATGGCTGGGT-CGCTCGTAGATTCAA 401
Query 479 CCAAGTCTCTACATTTGGAGCTGTT-TTGGATATGGTTACAGATAGAGTCAGCACAGCCT 537
|||||| || ||||||||||||||| ||| | ||||| ||||||||||| ||||| || |
Sbjct 402 CCAAGTTTCAACATTTGGAGCTGTTCTTG-ACATGGTCACAGATAGAGTTAGCACGGCTT 460
Query 538 GTCTTCTCGTGATTCTCTCCCAGATATACAGGCCTAGCTTGGTTTTCCTGTCATTGCTGG 597
|||| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 461 GTCTACTCGTGATTCTCTCTCAGATCTACAGGCCTAGCTTGGTCTTCCTCTCATTGCTGG 520
Query 598 CTTTAGATATCGCTAGTCACTGGCTGCAAATGTACAGTACCTTCCTATCAGGGAAGACCA 657
|||||||||| ||||||||||||||||| ||||||||||| || ||| ||||||||| ||
Sbjct 521 CTTTAGATATTGCTAGTCACTGGCTGCAGATGTACAGTACGTTTCTAGCAGGGAAGAGCA 580
Query 658 GCCATAAGGATGTGAAAGATAGCACGAGCTGGCTCTTTAGACTCTATTATGGAAACCGGA 717
||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||
Sbjct 581 GCCATAAGGATGTGAAAGACAGCACAAGCTGGCTTTTTAGACTCTACTATGGAAACCGGA 640
Query 718 TGTTCATGGGTTATTGCTGTGTTTCCTGCGAGGTTCTTTATATAATCCTTCTTCTCATAG 777
| || ||| |||||||||||||||| ||||||||||| ||||| |||||||||||||| |
Sbjct 641 TATTTATGTGTTATTGCTGTGTTTCTTGCGAGGTTCTGTATATCATCCTTCTTCTCATTG 700
Query 778 CAACGAACCAAACCGAAAA-CTTGATGAACGTGGTAGTGAA-ATCATTGATGCAGATTTC 835
||| ||||||| ||||||| || |||| || ||||| | | |||| | ||||||||
Sbjct 701 CAAAGAACCAATCCGAAAATCTCC-TGAATGTCGTAGTTACCA-CATTAACACAGATTTC 758
Query 836 ACCGCTCTCTTTACTCTTGGCTTTGAGCATAT-TT-GGTTGGTCCATCAAGCAGATCATC 893
||| |||||||| ||| |||| |||| ||| | || |||||||| || ||||||| | |
Sbjct 759 ACCACTCTCTTTTCTCCTGGCGTTGA-CAT-TGTTCGGTTGGTCGATGAAGCAGACCGTT 816
Query 894 AATGTGATTCAGATGAAAACGGCTGCAGATGTTTGTGTCCTGTATGACATAGAGAAACAG 953
||||| |||||||||||||| |||||||| |||||||| |||||||| |||||||| |||
Sbjct 817 AATGTCATTCAGATGAAAACTGCTGCAGACGTTTGTGTACTGTATGATATAGAGAAGCAG 876
Query 954 CATAAGAAGCCTTGA 968
|| ||||||||||
Sbjct 877 CA---GAAGCCTTGA 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41325242028
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5