BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38590.2
Length=3159
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943821 jgi|Araly1|943821|scaffold_700050.1 963 0.0
Ahg338750 jgi|Araly1|338750|fgenesh1_pg.C_scaffold_2000849 448 2e-124
Ahg338522 jgi|Araly1|338522|fgenesh1_pg.C_scaffold_2000621 448 2e-124
Ahg916018 jgi|Araly1|916018|Al_scaffold_0008_769 442 8e-123
Ahg905744 jgi|Araly1|905744|Al_scaffold_0003_2872 431 2e-119
Ahg359611 jgi|Araly1|359611|fgenesh1_pg.C_scaffold_480000001 370 4e-101
Ahg947994 jgi|Araly1|947994|scaffold_704223.1 348 2e-94
Ahg943822 jgi|Araly1|943822|scaffold_700051.1 329 6e-89
Ahg952037 jgi|Araly1|952037|scaffold_31500001.1 274 3e-72
> Ahg943821 jgi|Araly1|943821|scaffold_700050.1
Length=1395
Score = 963 bits (521), Expect = 0.0
Identities = 689/764 (90%), Gaps = 36/764 (5%)
Strand=Plus/Plus
Query 1 ATGAAGTCGAGAACACGATACTTGATAGCGATTCTACTTGTAATTTCGCTCTGTTCCAAG 60
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 21 ATGAAGTCAAGAACACGATACTTGATAGCGATTCTACTTGTAGTTTCGCTCTGTTCCAAG 80
Query 61 GCAAG-CA--GCCAT-GATGATGAGAA---AAAGAAGA-AA-G--GAGTAACATACG--A 107
||||| || ||||| | || ||||| | || || || | ||| || | | | |
Sbjct 81 GCAAGCCATGGCCATGGGGGAGGAGAAGTTGATGATGACAATGATGAGAAAAAGAAGAAA 140
Query 108 CG-GT-TC-TGA-G-CGGAACTTCATTGATCATAAATGGAAAAAGAGAGCTTCTTTTCTC 162
| || | | | | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 141 GGAGTAACAT-ACGACGGAACTTCGTTGATCATAAATGGAAAAAGAGAGCTTCTTTTCTC 199
Query 163 TGGTTCTGTTCATTACCCTCGAAGCACACCTCACGTAAGCACATGTGGCCCAGTATCATT 222
|| ||||||||||||||||||||||||| | | | | ||||||||||||||||||||
Sbjct 200 TGTTTCTGTTCATTACCCTCGAAGCACA---C-C-T--G-ACATGTGGCCCAGTATCATT 251
Query 223 GACAAAGCTAGAATTGGGGGACTTAACACCATCCAAACTTATGTTTTCTGGAATGTCCAT 282
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 252 GACAAAGCTAGAATTGGGGGACTTAACACCATCCAAACTTATGTTTTCTGGAATGTGCAT 311
Query 283 GAGCCTGAACAAGGCAAGTATGATTTCAAGGGGAGATTTGACTTGGTGAAATTCATCAAA 342
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 312 GAGCCTGAACATCGCAAGTATGATTTCAAGGGGAGATTTGACTTGGTGACATTCATCAAA 371
Query 343 CTAATCCACGAGAAAGGTCTCTATGTCACTCTCAGACTCGGACCCTTTATCCAAGCCGAA 402
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 CTAATCCAGGAGAAAGGTCTCTATGTCACTCTCAGACTCGGACCCTTTATCCAAGCCGAA 431
Query 403 TGGAACCACGGAGGGTTGCCGTACTGGCTACGCGAGGTCCCAGATGTTTACTTCCGTACA 462
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 432 TGGAACCACGGAGGGTTGCCTTACTGGCTACGCGAGGTCCCAGAGGTTTACTTTCGTACA 491
Query 463 AATAATGAACCTTTTAAGGAACATACAGAGAGATATGTGAGGAAAATACTTGGGATGATG 522
||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 492 GATAATGAACCTTTCAAGGAACACACAGAGAGATATGTGAGGAAAATACTTGGAATGATG 551
Query 523 AAGGAAGAGAAGCTGT-TCGCTTCACAA-GGAGGTCCCATCATCTTGGGACAGATAGAGA 580
|| ||||||||||| | | |||||||| ||||||||||||||||||||||||| || |
Sbjct 552 AAAGAAGAGAAGCT-TCTATCTTCACAAAGGAGGTCCCATCATCTTGGGACAGA--GA-A 607
Query 581 ATGAGTACAACGCGGTTCAGCTAGCCTACAAGGAGAATGGAGAGA-AGTATATAAAATGG 639
||||| ||||||||||||||||||||||||||||||||| |||| | ||||||||||||
Sbjct 608 -TGAGTGCAACGCGGTTCAGCTAGCCTACAAGGAGAATGGTGAGAGA-TATATAAAATGG 665
Query 640 GCAGCAAATTTGGTGGAGTCAATGAATCTGGGAATCCCCTGGGTTATGTGCAAACAAAAC 699
||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 666 GCAGCGAATTTGGTAGAGTCAATGAAACTGGGAATCCCCTGGGTAATGTGCAAACAAAAC 725
Query 700 GATGCTCCTGGCAATCTGATTAATGCTTGTAATGGAAGGCATTG 743
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct 726 AATGCTCCTGGCAATCTTATTAATGCTTGTAATGGAAGGCATTG 769
Score = 667 bits (361), Expect = 0.0
Identities = 464/510 (91%), Gaps = 21/510 (4%)
Strand=Plus/Plus
Query 2034 GTACCATATACCGAGATCTTTCATGAAGGGGGAGAAGAAGAAGAACATGCTGGTGATTCT 2093
|||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||||||||
Sbjct 887 GTACCATATACCAAGATCATTCATGAAGGAGGAGAAGAAGAAGAACATGTTGGTGATTCT 946
Query 2094 CGAGGAAGAACCAGGGGTGAAGTTAGAGTCTATTGATTTCGTGTTGGTGAATAGAGACAC 2153
|||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||
Sbjct 947 AGAGGAAGAACCAGGGGTGAAGTCAGAGGCTATTGACTTCGTGTTGGTGAATAGAGACAC 1006
Query 2154 AATCTGTAGTAATGTCGGGGAGGATTACCCAGTATCGGTGAAATCGTGGAAGAGAGAAGG 2213
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 AATCTGAAGTTATGTCGGGGAGGATTACCCAGTATCGGTGAAATCGTGGAAGAGAGAAGG 1066
Query 2214 GCCAAAGATAGTTTCGAGAAGCAAAGATATGAGGCTAAAGGCAGTGATGAGGTGTCCACC 2273
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1067 GCCAAAGATAGCTTCGAGAAGCAAAGATATGAGGCTAAAGGCAGTGATGAAGTGTCCACC 1126
Query 2274 GGAGAAACAAATGGTGGAAGTACAATTTGCAAGCTTCGGAGATCCGACAGGAACTTGTGG 2333
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1127 GGAGAAACAAATGGTGGCGGTAGAATTTGCAAGCTTCGGAGATCCGACAGGAACTTGTGG 1186
Query 2334 TAACTTCACAATGGGGAAGTGCTCTGCATCTAAGTCAAAGGAGGTGGT---------C-G 2383
||||||||||| |||||||||||||||||||||||||| |||||||| | |
Sbjct 1187 GAACTTCACAATAGGGAAGTGCTCTGCATCTAAGTCAAAAGAGGTGGTGGAGAAGGACAG 1246
Query 2384 -A-----G--A-AGGAGTGTTTGGGTAGGAATTATTGTTCCATAGTAGTAGCGAGGGAGA 2434
| | | ||||||||||||| | |||| ||||||| |||||||||||||| ||||
Sbjct 1247 GACTCCTGTTACAGGAGTGTTTGGGGAAGAATCATTGTTCGATAGTAGTAGCGAGAGAGA 1306
Query 2435 CTTTTGGGGACAAAGGGTGTCCGGAGATAGTGAAGACATTGGCAGTGCA-AGTCAAGTGT 2493
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1307 CTTTTGGGGACAAAGGGTGTCCGGAGATAGTGAAGACATTGGCAGTGCAGA-TCAAGTGT 1365
Query 2494 Gagaagaaagaaggaaaacaagatgagaag 2523
||||||||||||||| ||| ||||||||||
Sbjct 1366 GAGAAGAAAGAAGGAGAACTAGATGAGAAG 1395
Score = 169 bits (91), Expect = 1e-40
Identities = 102/107 (95%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 813 GTTTCGAGTTTTTGGGGATCCTCCAACACAGAGAACAGTC-GAAGATATTGCATTCTCAG 871
||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| |
Sbjct 769 GTTTCGAGTTTTTGGGGATCCTCCAACTCATAGAACAGTCAGAAGATATTGCATTCTCGG 828
Query 872 TCGCTAGATACTTCTCTAAGAACGGATCCCATGTCAACTACTACATG 918
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 829 TCGCTAGATACTTCTCTAAGAACGGATCTCATGTCAACTACTACATG 875
> Ahg338750 jgi|Araly1|338750|fgenesh1_pg.C_scaffold_2000849
Length=1413
Score = 448 bits (242), Expect = 2e-124
Identities = 278/296 (94%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 1812 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCC 1871
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 1017 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCC 1076
Query 1872 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAG 1931
|||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct 1077 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAAGGAGAGAACGCGGTCGCCATTAG 1136
Query 1932 GATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTG 1991
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1137 GATGAAAGGAATGGGAAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATACTG 1196
Query 1992 GATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATC 2051
|||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| |||||
Sbjct 1197 GATGTCATTCGTTTCTCCACTCGGAGAGCCAATTCAAACGGAGTACCATATACCAAGATC 1256
Query 2052 TTTCATGAAGGGGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG 2107
||||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 1257 TTTCATGAAGGAGGAGAAGAAGAAGAGCATGTTGGTGATTCTCGAGGAAGAGCCAG 1312
Score = 281 bits (152), Expect = 2e-74
Identities = 224/257 (87%), Gaps = 12/257 (5%)
Strand=Plus/Plus
Query 1319 TTGTCAAGTCAGAGAAGACAAGCAAAGGTCTCAAATTTGAGATGTTTAGTGAAAATATTC 1378
|||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 590 TTGTTAAGTCCGAGAAGACAAGCAAAGGTCTCAAATTTGAGATGTTTAGTGAAGATATTC 649
Query 1379 CTTCCTTACTTGACGGTGATTCTTTGATTCCGGGGGAGCTTTATTACTTAACTAAAGACA 1438
||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||| ||||
Sbjct 650 CTTCCATACTCGACGGTGATTCCTTGATTCTGGGGGAGCTTTATTACTTAACTAAGGACA 709
Query 1439 AAACAGATTATGCTTG-----C-----G--TAAAGATTGACGAAGATGACTTTCCAGACC 1486
|||||||||||||||| | | |||||||||| || |||||| | |||||||
Sbjct 710 AAACAGATTATGCTTGGTATACCACAAGCATAAAGATTGAAGATGATGACATACCAGACC 769
Query 1487 AAAAAGGTCTGAAGACTATACTGAGAGTAGCGAGTCTTGGTCACGCACTGATCGTTTACG 1546
| ||||||| |||||| ||||||||||||||| ||||||||||| || | ||||||||||
Sbjct 770 AGAAAGGTCAGAAGACGATACTGAGAGTAGCGGGTCTTGGTCACACATTAATCGTTTACG 829
Query 1547 TTAACGGAGAGTACGCA 1563
|||| ||||| ||||||
Sbjct 830 TTAATGGAGAATACGCA 846
Score = 241 bits (130), Expect = 3e-62
Identities = 157/170 (92%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 1618 AACTTTAA-AACCGGAGATAATCGCATTTCAATTTTGGGTGTACTAACCGGATTACCAGA 1676
||| |||| |||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 850 AAC-TTAAGAACCAGAGATAATTGTATTTCAATTTTGGGTGTACTAACCGGATTACCAGA 908
Query 1677 CAGTGGATCATACATGGAACACAGGTTTGCTGGTCCACGTGCTATTTCAATCATCGGTTT 1736
||||||||||||||||||||||| || ||| |||||||||| | ||||||||||||||||
Sbjct 909 CAGTGGATCATACATGGAACACACGTATGCCGGTCCACGTGGTGTTTCAATCATCGGTTT 968
Query 1737 AAAGTCAGGAACGCGAGATTTGACCGAGAACAATGAATGGGGACACTTGG 1786
||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 969 AAAGTCAGGAACGCGAGATTTGATAGAGAACAATGAATGGGGACATTTGG 1018
> Ahg338522 jgi|Araly1|338522|fgenesh1_pg.C_scaffold_2000621
Length=741
Score = 448 bits (242), Expect = 2e-124
Identities = 278/296 (94%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 1812 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCC 1871
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 387 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCC 446
Query 1872 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAG 1931
|||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct 447 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAAGGAGAGAACGCGGTCGCCATTAG 506
Query 1932 GATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTG 1991
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 507 GATGAAAGGAATGGGAAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATACTG 566
Query 1992 GATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATC 2051
|||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| |||||
Sbjct 567 GATGTCATTCGTTTCTCCACTCGGAGAGCCAATTCAAACGGAGTACCATATACCAAGATC 626
Query 2052 TTTCATGAAGGGGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG 2107
||||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 627 TTTCATGAAGGAGGAGAAGAAGAAGAGCATGTTGGTGATTCTCGAGGAAGAGCCAG 682
Score = 235 bits (127), Expect = 1e-60
Identities = 157/171 (92%), Gaps = 4/171 (2%)
Strand=Plus/Plus
Query 1618 AACTTTAA-AACCGGAGATAATCGCATTTCAATTTTGGGTGTACTAACCGGATTACCAGA 1676
||| |||| |||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 220 AAC-TTAAGAACCAGAGATAATTGTATTTCAATTTTGGGTGTACTAACCGGATTACCAGA 278
Query 1677 CAGTGGATCATACATGGAACACAGGTTTGCTGGTCCACGTG-CTATTTCAATCATCGGTT 1735
||||||||||||||||||||||| || ||| |||||||||| | |||||||||||||||
Sbjct 279 CAGTGGATCATACATGGAACACACGTATGCCGGTCCACGTGGCG-TTTCAATCATCGGTT 337
Query 1736 TAAAGTCAGGAACGCGAGATTTGACCGAGAACAATGAATGGGGACACTTGG 1786
|||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 338 TAAAGTCAGGAACGCGAGATTTGATAGAGAACAATGAATGGGGACATTTGG 388
> Ahg916018 jgi|Araly1|916018|Al_scaffold_0008_769
Length=1020
Score = 442 bits (239), Expect = 8e-123
Identities = 278/297 (94%), Gaps = 2/297 (1%)
Strand=Plus/Plus
Query 1812 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCC 1871
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 96 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCC 155
Query 1872 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAG 1931
|||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct 156 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAAGGAGAGAACGCGGTCGCCATTAG 215
Query 1932 GATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTG 1991
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 216 GATGAAAGGAATGGGAAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATACTG 275
Query 1992 GATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATC 2051
|||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| |||||
Sbjct 276 GATGTCATTCGTTTCTCCACTCGGAGAGCCAATTCAAACGGAGTACCATATACCAAGATC 335
Query 2052 TTTCATGAAGG-GGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG 2107
||||||||||| ||| ||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 336 TTTCATGAAGGAGGG-GAAGAAGAAGAGCATGTTGGTGATTCTCGAGGAAGAGCCAG 391
Score = 124 bits (67), Expect = 3e-27
Identities = 88/98 (90%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 1690 ATGGAACACAGGTTTGCTGGTCCACG-TGCTATTTCAATCATCGGTTTAAAGTCAGGAAC 1748
|||||||||| || ||| |||||||| | | ||||||||||||||||||||||||||||
Sbjct 1 ATGGAACACACGTATGCCGGTCCACGAAG-TGTTTCAATCATCGGTTTAAAGTCAGGAAC 59
Query 1749 GCGAGATTTGACCGAGAACAATGAATGGGGACACTTGG 1786
||||||||||| |||||||||||||||||||| ||||
Sbjct 60 GCGAGATTTGATAGAGAACAATGAATGGGGACATTTGG 97
> Ahg905744 jgi|Araly1|905744|Al_scaffold_0003_2872
Length=1011
Score = 431 bits (233), Expect = 2e-119
Identities = 275/296 (93%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 1812 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCC 1871
|||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 357 GGTGTACATAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCC 416
Query 1872 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAG 1931
|||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct 417 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAAGGAGAGAACGCGGTCGCCATTAG 476
Query 1932 GATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTG 1991
|||||||| |||||| |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 477 GATGAAAGGAATGGGAAAGGGATTGATTTGGGTTCATGGAATTGGCGTAGGGAGATACTG 536
Query 1992 GATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATC 2051
|||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| |||||
Sbjct 537 GATGTCATTCGTTTCTCCACTCGGAGAGCCAATTCAAACGGAGTACCATATACCAAGATC 596
Query 2052 TTTCATGAAGGGGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG 2107
||||||||||| |||||||||||||| |||| | ||||||||||||||||| ||||
Sbjct 597 TTTCATGAAGGAGGAGAAGAAGAAGAGCATGTTTGTGATTCTCGAGGAAGAGCCAG 652
Score = 159 bits (86), Expect = 9e-38
Identities = 105/114 (92%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1674 AGACAGTGGATCATACATGGAACACAGGTTTGCTGGTCCACGT-GCTATTTCAATCATCG 1732
|||||||||||||||||||||||||| || ||| ||||||||| || ||||||||||||
Sbjct 246 AGACAGTGGATCATACATGGAACACACGTATGCCGGTCCACGTGGC-GTTTCAATCATCG 304
Query 1733 GTTTAAAGTCAGGAACGCGAGATTTGACCGAGAACAATGAATGGGGACACTTGG 1786
||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 305 GTTTAAAGTCAGGAACGCGAGATTTGATAGAGAACAATGAATGGGGACATTTGG 358
> Ahg359611 jgi|Araly1|359611|fgenesh1_pg.C_scaffold_480000001
Length=771
Score = 370 bits (200), Expect = 4e-101
Identities = 266/296 (90%), Gaps = 12/296 (4%)
Strand=Plus/Plus
Query 1812 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCC 1871
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 387 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCC 446
Query 1872 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAG 1931
||||||||||| | | | |||||||||| |||| |||||||||||| |||||
Sbjct 447 TCTTACGTGGT-----A-C-A-----AGACACCAGAAGGAGAGAACGCGGTCGCCATTAG 494
Query 1932 GATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTG 1991
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 495 GATGAAAGGAATGGGAAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATACTG 554
Query 1992 GATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATC 2051
|||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| |||||
Sbjct 555 GATGTCATTCGTTTCTCCACTCGGAGAGCCAATTCAAACGGAGTACCATATACCAAGATC 614
Query 2052 TTTCATGAAGGGGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG 2107
||||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 615 TTTCATGAAGGAGGAGAAGAAGAAGAGCATGTTGGTGATTCTCGAGGAAGAGCCAG 670
Score = 241 bits (130), Expect = 3e-62
Identities = 157/170 (92%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 1618 AACTTTAA-AACCGGAGATAATCGCATTTCAATTTTGGGTGTACTAACCGGATTACCAGA 1676
||| |||| |||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 220 AAC-TTAAGAACCAGAGATAATTGTATTTCAATTTTGGGTGTACTAACCGGATTACCAGA 278
Query 1677 CAGTGGATCATACATGGAACACAGGTTTGCTGGTCCACGTGCTATTTCAATCATCGGTTT 1736
||||||||||||||||||||||| || ||| |||||||||| | ||||||||||||||||
Sbjct 279 CAGTGGATCATACATGGAACACACGTATGCCGGTCCACGTGGTGTTTCAATCATCGGTTT 338
Query 1737 AAAGTCAGGAACGCGAGATTTGACCGAGAACAATGAATGGGGACACTTGG 1786
||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 339 AAAGTCAGGAACGCGAGATTTGATAGAGAACAATGAATGGGGACATTTGG 388
> Ahg947994 jgi|Araly1|947994|scaffold_704223.1
Length=595
Score = 348 bits (188), Expect = 2e-94
Identities = 263/296 (89%), Gaps = 17/296 (6%)
Strand=Plus/Plus
Query 1813 GTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCCT 1872
|||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||
Sbjct 234 GTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCCT 293
Query 1873 CTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAGG 1932
||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 294 CTTACGTGGTACAAGACCTACTTTGAGACACCAGAAGGAGAGAACGCGGTCGCCATTAGG 353
Query 1933 ATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTGG 1992
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 354 ATGAAAGGAATGGGAAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATACTGG 413
Query 1993 ATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATCT 2052
||||| ||| |||||||||| |||||| | | | | ||||||| ||||||
Sbjct 414 ATGTCATTCGTTTCTCCACTCGGAGAG-----T-A--C------C-ATATACCAAGATCT 458
Query 2053 TTCATGAAGG-GGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG 2107
|||||||||| ||| ||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 459 TTCATGAAGGAGGG-GAAGAAGAAGAGCATGTTGGTGATTCTCGAGGAAGAGCCAG 513
Score = 250 bits (135), Expect = 5e-65
Identities = 203/234 (87%), Gaps = 12/234 (5%)
Strand=Plus/Plus
Query 1340 GCAAAGGTCTCAAATTTGAGATGTTTAGTGAAAATATTCCTTCCTTACTTGACGGTGATT 1399
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 1 GCAAAGGTCTCAAATTTGAGATGTTTAGTGAAGATATTCCTTCCATACTCGACGGTGATT 60
Query 1400 CTTTGATTCCGGGGGAGCTTTATTACTTAACTAAAGACAAAACAGATTATGCTTG----- 1454
| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 CCTTGATTCTGGGGGAGCTTTATTACTTAACTAAGGACAAAACAGATTATGCTTGGTATA 120
Query 1455 CG----T-A-AA-GATTGACGAAGATGACTTTCCAGACCAAAAAGGTCTGAAGACTATAC 1507
| | | || |||||| || |||||| | |||||||| ||||||| |||||| ||||
Sbjct 121 CCACAATCATAAAGATTGAAGATGATGACATACCAGACCAGAAAGGTCAGAAGACGATAC 180
Query 1508 TGAGAGTAGCGAGTCTTGGTCACGCACTGATCGTTTACGTTAACGGAGAGTACG 1561
||||||||||| |||||||||||||| | |||||||||||||| ||||| ||||
Sbjct 181 TGAGAGTAGCGGGTCTTGGTCACGCATTAATCGTTTACGTTAATGGAGAATACG 234
> Ahg943822 jgi|Araly1|943822|scaffold_700051.1
Length=2461
Score = 329 bits (178), Expect = 6e-89
Identities = 267/306 (87%), Gaps = 21/306 (7%)
Strand=Plus/Plus
Query 2650 TCCGATTCTGCCCTGGTGTCGGATCTAGGTTTTGGCCCTTTCTCTACGGTAGTTGTTAAT 2709
|||||| |||||||| | ||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 186 TCCGATCCTGCCCTGTTATCGGATCTAGGTTTTGGCCCTTTGTCTACGGTACTTGTTCAT 245
Query 2710 GTCCCTCTAATCGGTGGAGCGGCTCCGCCTCAGCCCCGCTTCAATTTAATGCCTCCGTCA 2769
||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 246 GTCCCTCTAATCGGTGGAGCGGCTCCGCCTCAGCCCCTCTTCAATT-----C-------A 293
Query 2770 AACTATGTCGCTGGTTTGGGTCGTGGGGCTGCAGGGTTTACTACCCGCTCCGATATTGGT 2829
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 294 AACTATGTCGCTGGTTTGGGTCGTGGGGCTACAGGGTTTACTACCCGCTCCGATATTGGT 353
Query 2830 CCTGCTCGTGCTAATGGCGATGGAAACGCTGACGTGAATCACAAGTTTGATGATTTTGAA 2889
|||||||||||| ||||||||| | || ||| | ||||||||||||||| ||||||
Sbjct 354 CCTGCTCGTGCTGATGGCGATG-A--CG-TGA----A-TCACAAGTTTGATGACTTTGAA 404
Query 2890 GGGCATGATGCCGGATTGTTCGCTAATGCCGAGAGTGATGACCAAGACAAAGAGGCTGAT 2949
||| ||||||| ||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 405 GGGAATGATGCGGGATTGTTCGCTAATGCCGAGTGTGATGACGGAGACACAGAGGCTGAC 464
Query 2950 GCTATT 2955
|| |||
Sbjct 465 GCCATT 470
Score = 213 bits (115), Expect = 6e-54
Identities = 123/127 (97%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 3021 AGAAATCGAGAATTACAGAGCCTCCAACCCTAAAGTTTCTGGGCAGTTTGTGGATTTGAC 3080
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 494 AGACATCGAGAATTACAGAGCCTCCAACCCTAAAGTTTCTGAGCAGTTTGTGGATCTGAA 553
Query 3081 GAGAAAGTTGCATACTTTGTCTGAGGATGAATGGGATAGTATTCCAGAGATTGGGAATTA 3140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GAGAAAGTTGCATACTTTGTCTGAGGATGAATGGGATAGTATTCCAGAGATTGGGAATTA 613
Query 3141 CTCGCAT 3147
|||||||
Sbjct 614 CTCGCAT 620
> Ahg952037 jgi|Araly1|952037|scaffold_31500001.1
Length=310
Score = 274 bits (148), Expect = 3e-72
Identities = 218/250 (87%), Gaps = 12/250 (5%)
Strand=Plus/Plus
Query 1326 GTCAGAGAAGACAAGCAAAGGTCTCAAATTTGAGATGTTTAGTGAAAATATTCCTTCCTT 1385
||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
Sbjct 32 GTCCGAGAAGACAAGCAAAGGTCTCAAATTTGACATGTTTAGTGAAGATATTCCTTCCAT 91
Query 1386 ACTTGACGGTGATTCTTTGATTCCGGGGGAGCTTTATTACTTAACTAAAGACAAAACAGA 1445
||| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 92 ACTCGACGGTGATTCCTTGATTCTGGGGGAGCTTTATTACTTAACTAAGGACAAAACAGA 151
Query 1446 TTATGCTTG-----C-----G--TAAAGATTGACGAAGATGACTTTCCAGACCAAAAAGG 1493
||||||||| | | |||||||||| || |||||| | |||||||| |||||
Sbjct 152 TTATGCTTGGTATACCACAAGCATAAAGATTGAAGATGATGACATACCAGACCAGAAAGG 211
Query 1494 TCTGAAGACTATACTGAGAGTAGCGAGTCTTGGTCACGCACTGATCGTTTACGTTAACGG 1553
|| |||||| ||||||||||||||| |||||||||||||| | |||||||||||||| ||
Sbjct 212 TCAGAAGACGATACTGAGAGTAGCGGGTCTTGGTCACGCATTAATCGTTTACGTTAATGG 271
Query 1554 AGAGTACGCA 1563
||| ||||||
Sbjct 272 AGAATACGCA 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119336737585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5