BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G38590.2 Length=3159 Score E Sequences producing significant alignments: (Bits) Value Ahg943821 jgi|Araly1|943821|scaffold_700050.1 963 0.0 Ahg338750 jgi|Araly1|338750|fgenesh1_pg.C_scaffold_2000849 448 2e-124 Ahg338522 jgi|Araly1|338522|fgenesh1_pg.C_scaffold_2000621 448 2e-124 Ahg916018 jgi|Araly1|916018|Al_scaffold_0008_769 442 8e-123 Ahg905744 jgi|Araly1|905744|Al_scaffold_0003_2872 431 2e-119 Ahg359611 jgi|Araly1|359611|fgenesh1_pg.C_scaffold_480000001 370 4e-101 Ahg947994 jgi|Araly1|947994|scaffold_704223.1 348 2e-94 Ahg943822 jgi|Araly1|943822|scaffold_700051.1 329 6e-89 Ahg952037 jgi|Araly1|952037|scaffold_31500001.1 274 3e-72 > Ahg943821 jgi|Araly1|943821|scaffold_700050.1 Length=1395 Score = 963 bits (521), Expect = 0.0 Identities = 689/764 (90%), Gaps = 36/764 (5%) Strand=Plus/Plus Query 1 ATGAAGTCGAGAACACGATACTTGATAGCGATTCTACTTGTAATTTCGCTCTGTTCCAAG 60 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 21 ATGAAGTCAAGAACACGATACTTGATAGCGATTCTACTTGTAGTTTCGCTCTGTTCCAAG 80 Query 61 GCAAG-CA--GCCAT-GATGATGAGAA---AAAGAAGA-AA-G--GAGTAACATACG--A 107 ||||| || ||||| | || ||||| | || || || | ||| || | | | | Sbjct 81 GCAAGCCATGGCCATGGGGGAGGAGAAGTTGATGATGACAATGATGAGAAAAAGAAGAAA 140 Query 108 CG-GT-TC-TGA-G-CGGAACTTCATTGATCATAAATGGAAAAAGAGAGCTTCTTTTCTC 162 | || | | | | ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 141 GGAGTAACAT-ACGACGGAACTTCGTTGATCATAAATGGAAAAAGAGAGCTTCTTTTCTC 199 Query 163 TGGTTCTGTTCATTACCCTCGAAGCACACCTCACGTAAGCACATGTGGCCCAGTATCATT 222 || ||||||||||||||||||||||||| | | | | |||||||||||||||||||| Sbjct 200 TGTTTCTGTTCATTACCCTCGAAGCACA---C-C-T--G-ACATGTGGCCCAGTATCATT 251 Query 223 GACAAAGCTAGAATTGGGGGACTTAACACCATCCAAACTTATGTTTTCTGGAATGTCCAT 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 252 GACAAAGCTAGAATTGGGGGACTTAACACCATCCAAACTTATGTTTTCTGGAATGTGCAT 311 Query 283 GAGCCTGAACAAGGCAAGTATGATTTCAAGGGGAGATTTGACTTGGTGAAATTCATCAAA 342 ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 312 GAGCCTGAACATCGCAAGTATGATTTCAAGGGGAGATTTGACTTGGTGACATTCATCAAA 371 Query 343 CTAATCCACGAGAAAGGTCTCTATGTCACTCTCAGACTCGGACCCTTTATCCAAGCCGAA 402 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 372 CTAATCCAGGAGAAAGGTCTCTATGTCACTCTCAGACTCGGACCCTTTATCCAAGCCGAA 431 Query 403 TGGAACCACGGAGGGTTGCCGTACTGGCTACGCGAGGTCCCAGATGTTTACTTCCGTACA 462 |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| Sbjct 432 TGGAACCACGGAGGGTTGCCTTACTGGCTACGCGAGGTCCCAGAGGTTTACTTTCGTACA 491 Query 463 AATAATGAACCTTTTAAGGAACATACAGAGAGATATGTGAGGAAAATACTTGGGATGATG 522 ||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 492 GATAATGAACCTTTCAAGGAACACACAGAGAGATATGTGAGGAAAATACTTGGAATGATG 551 Query 523 AAGGAAGAGAAGCTGT-TCGCTTCACAA-GGAGGTCCCATCATCTTGGGACAGATAGAGA 580 || ||||||||||| | | |||||||| ||||||||||||||||||||||||| || | Sbjct 552 AAAGAAGAGAAGCT-TCTATCTTCACAAAGGAGGTCCCATCATCTTGGGACAGA--GA-A 607 Query 581 ATGAGTACAACGCGGTTCAGCTAGCCTACAAGGAGAATGGAGAGA-AGTATATAAAATGG 639 ||||| ||||||||||||||||||||||||||||||||| |||| | |||||||||||| Sbjct 608 -TGAGTGCAACGCGGTTCAGCTAGCCTACAAGGAGAATGGTGAGAGA-TATATAAAATGG 665 Query 640 GCAGCAAATTTGGTGGAGTCAATGAATCTGGGAATCCCCTGGGTTATGTGCAAACAAAAC 699 ||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 666 GCAGCGAATTTGGTAGAGTCAATGAAACTGGGAATCCCCTGGGTAATGTGCAAACAAAAC 725 Query 700 GATGCTCCTGGCAATCTGATTAATGCTTGTAATGGAAGGCATTG 743 |||||||||||||||| |||||||||||||||||||||||||| Sbjct 726 AATGCTCCTGGCAATCTTATTAATGCTTGTAATGGAAGGCATTG 769 Score = 667 bits (361), Expect = 0.0 Identities = 464/510 (91%), Gaps = 21/510 (4%) Strand=Plus/Plus Query 2034 GTACCATATACCGAGATCTTTCATGAAGGGGGAGAAGAAGAAGAACATGCTGGTGATTCT 2093 |||||||||||| ||||| |||||||||| ||||||||||||||||||| |||||||||| Sbjct 887 GTACCATATACCAAGATCATTCATGAAGGAGGAGAAGAAGAAGAACATGTTGGTGATTCT 946 Query 2094 CGAGGAAGAACCAGGGGTGAAGTTAGAGTCTATTGATTTCGTGTTGGTGAATAGAGACAC 2153 |||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||| Sbjct 947 AGAGGAAGAACCAGGGGTGAAGTCAGAGGCTATTGACTTCGTGTTGGTGAATAGAGACAC 1006 Query 2154 AATCTGTAGTAATGTCGGGGAGGATTACCCAGTATCGGTGAAATCGTGGAAGAGAGAAGG 2213 |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1007 AATCTGAAGTTATGTCGGGGAGGATTACCCAGTATCGGTGAAATCGTGGAAGAGAGAAGG 1066 Query 2214 GCCAAAGATAGTTTCGAGAAGCAAAGATATGAGGCTAAAGGCAGTGATGAGGTGTCCACC 2273 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1067 GCCAAAGATAGCTTCGAGAAGCAAAGATATGAGGCTAAAGGCAGTGATGAAGTGTCCACC 1126 Query 2274 GGAGAAACAAATGGTGGAAGTACAATTTGCAAGCTTCGGAGATCCGACAGGAACTTGTGG 2333 ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 1127 GGAGAAACAAATGGTGGCGGTAGAATTTGCAAGCTTCGGAGATCCGACAGGAACTTGTGG 1186 Query 2334 TAACTTCACAATGGGGAAGTGCTCTGCATCTAAGTCAAAGGAGGTGGT---------C-G 2383 ||||||||||| |||||||||||||||||||||||||| |||||||| | | Sbjct 1187 GAACTTCACAATAGGGAAGTGCTCTGCATCTAAGTCAAAAGAGGTGGTGGAGAAGGACAG 1246 Query 2384 -A-----G--A-AGGAGTGTTTGGGTAGGAATTATTGTTCCATAGTAGTAGCGAGGGAGA 2434 | | | ||||||||||||| | |||| ||||||| |||||||||||||| |||| Sbjct 1247 GACTCCTGTTACAGGAGTGTTTGGGGAAGAATCATTGTTCGATAGTAGTAGCGAGAGAGA 1306 Query 2435 CTTTTGGGGACAAAGGGTGTCCGGAGATAGTGAAGACATTGGCAGTGCA-AGTCAAGTGT 2493 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1307 CTTTTGGGGACAAAGGGTGTCCGGAGATAGTGAAGACATTGGCAGTGCAGA-TCAAGTGT 1365 Query 2494 Gagaagaaagaaggaaaacaagatgagaag 2523 ||||||||||||||| ||| |||||||||| Sbjct 1366 GAGAAGAAAGAAGGAGAACTAGATGAGAAG 1395 Score = 169 bits (91), Expect = 1e-40 Identities = 102/107 (95%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 813 GTTTCGAGTTTTTGGGGATCCTCCAACACAGAGAACAGTC-GAAGATATTGCATTCTCAG 871 ||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| | Sbjct 769 GTTTCGAGTTTTTGGGGATCCTCCAACTCATAGAACAGTCAGAAGATATTGCATTCTCGG 828 Query 872 TCGCTAGATACTTCTCTAAGAACGGATCCCATGTCAACTACTACATG 918 |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 829 TCGCTAGATACTTCTCTAAGAACGGATCTCATGTCAACTACTACATG 875 > Ahg338750 jgi|Araly1|338750|fgenesh1_pg.C_scaffold_2000849 Length=1413 Score = 448 bits (242), Expect = 2e-124 Identities = 278/296 (94%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 1812 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCC 1871 ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| Sbjct 1017 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCC 1076 Query 1872 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAG 1931 |||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| Sbjct 1077 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAAGGAGAGAACGCGGTCGCCATTAG 1136 Query 1932 GATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTG 1991 |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 1137 GATGAAAGGAATGGGAAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATACTG 1196 Query 1992 GATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATC 2051 |||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| ||||| Sbjct 1197 GATGTCATTCGTTTCTCCACTCGGAGAGCCAATTCAAACGGAGTACCATATACCAAGATC 1256 Query 2052 TTTCATGAAGGGGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG 2107 ||||||||||| |||||||||||||| |||| ||||||||||||||||||| |||| Sbjct 1257 TTTCATGAAGGAGGAGAAGAAGAAGAGCATGTTGGTGATTCTCGAGGAAGAGCCAG 1312 Score = 281 bits (152), Expect = 2e-74 Identities = 224/257 (87%), Gaps = 12/257 (5%) Strand=Plus/Plus Query 1319 TTGTCAAGTCAGAGAAGACAAGCAAAGGTCTCAAATTTGAGATGTTTAGTGAAAATATTC 1378 |||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 590 TTGTTAAGTCCGAGAAGACAAGCAAAGGTCTCAAATTTGAGATGTTTAGTGAAGATATTC 649 Query 1379 CTTCCTTACTTGACGGTGATTCTTTGATTCCGGGGGAGCTTTATTACTTAACTAAAGACA 1438 ||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||| |||| Sbjct 650 CTTCCATACTCGACGGTGATTCCTTGATTCTGGGGGAGCTTTATTACTTAACTAAGGACA 709 Query 1439 AAACAGATTATGCTTG-----C-----G--TAAAGATTGACGAAGATGACTTTCCAGACC 1486 |||||||||||||||| | | |||||||||| || |||||| | ||||||| Sbjct 710 AAACAGATTATGCTTGGTATACCACAAGCATAAAGATTGAAGATGATGACATACCAGACC 769 Query 1487 AAAAAGGTCTGAAGACTATACTGAGAGTAGCGAGTCTTGGTCACGCACTGATCGTTTACG 1546 | ||||||| |||||| ||||||||||||||| ||||||||||| || | |||||||||| Sbjct 770 AGAAAGGTCAGAAGACGATACTGAGAGTAGCGGGTCTTGGTCACACATTAATCGTTTACG 829 Query 1547 TTAACGGAGAGTACGCA 1563 |||| ||||| |||||| Sbjct 830 TTAATGGAGAATACGCA 846 Score = 241 bits (130), Expect = 3e-62 Identities = 157/170 (92%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 1618 AACTTTAA-AACCGGAGATAATCGCATTTCAATTTTGGGTGTACTAACCGGATTACCAGA 1676 ||| |||| |||| |||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 850 AAC-TTAAGAACCAGAGATAATTGTATTTCAATTTTGGGTGTACTAACCGGATTACCAGA 908 Query 1677 CAGTGGATCATACATGGAACACAGGTTTGCTGGTCCACGTGCTATTTCAATCATCGGTTT 1736 ||||||||||||||||||||||| || ||| |||||||||| | |||||||||||||||| Sbjct 909 CAGTGGATCATACATGGAACACACGTATGCCGGTCCACGTGGTGTTTCAATCATCGGTTT 968 Query 1737 AAAGTCAGGAACGCGAGATTTGACCGAGAACAATGAATGGGGACACTTGG 1786 ||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 969 AAAGTCAGGAACGCGAGATTTGATAGAGAACAATGAATGGGGACATTTGG 1018 > Ahg338522 jgi|Araly1|338522|fgenesh1_pg.C_scaffold_2000621 Length=741 Score = 448 bits (242), Expect = 2e-124 Identities = 278/296 (94%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 1812 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCC 1871 ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| Sbjct 387 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCC 446 Query 1872 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAG 1931 |||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| Sbjct 447 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAAGGAGAGAACGCGGTCGCCATTAG 506 Query 1932 GATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTG 1991 |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 507 GATGAAAGGAATGGGAAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATACTG 566 Query 1992 GATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATC 2051 |||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| ||||| Sbjct 567 GATGTCATTCGTTTCTCCACTCGGAGAGCCAATTCAAACGGAGTACCATATACCAAGATC 626 Query 2052 TTTCATGAAGGGGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG 2107 ||||||||||| |||||||||||||| |||| ||||||||||||||||||| |||| Sbjct 627 TTTCATGAAGGAGGAGAAGAAGAAGAGCATGTTGGTGATTCTCGAGGAAGAGCCAG 682 Score = 235 bits (127), Expect = 1e-60 Identities = 157/171 (92%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 1618 AACTTTAA-AACCGGAGATAATCGCATTTCAATTTTGGGTGTACTAACCGGATTACCAGA 1676 ||| |||| |||| |||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 220 AAC-TTAAGAACCAGAGATAATTGTATTTCAATTTTGGGTGTACTAACCGGATTACCAGA 278 Query 1677 CAGTGGATCATACATGGAACACAGGTTTGCTGGTCCACGTG-CTATTTCAATCATCGGTT 1735 ||||||||||||||||||||||| || ||| |||||||||| | ||||||||||||||| Sbjct 279 CAGTGGATCATACATGGAACACACGTATGCCGGTCCACGTGGCG-TTTCAATCATCGGTT 337 Query 1736 TAAAGTCAGGAACGCGAGATTTGACCGAGAACAATGAATGGGGACACTTGG 1786 |||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 338 TAAAGTCAGGAACGCGAGATTTGATAGAGAACAATGAATGGGGACATTTGG 388 > Ahg916018 jgi|Araly1|916018|Al_scaffold_0008_769 Length=1020 Score = 442 bits (239), Expect = 8e-123 Identities = 278/297 (94%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 1812 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCC 1871 ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| Sbjct 96 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCC 155 Query 1872 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAG 1931 |||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| Sbjct 156 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAAGGAGAGAACGCGGTCGCCATTAG 215 Query 1932 GATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTG 1991 |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 216 GATGAAAGGAATGGGAAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATACTG 275 Query 1992 GATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATC 2051 |||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| ||||| Sbjct 276 GATGTCATTCGTTTCTCCACTCGGAGAGCCAATTCAAACGGAGTACCATATACCAAGATC 335 Query 2052 TTTCATGAAGG-GGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG 2107 ||||||||||| ||| ||||||||||| |||| ||||||||||||||||||| |||| Sbjct 336 TTTCATGAAGGAGGG-GAAGAAGAAGAGCATGTTGGTGATTCTCGAGGAAGAGCCAG 391 Score = 124 bits (67), Expect = 3e-27 Identities = 88/98 (90%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 1690 ATGGAACACAGGTTTGCTGGTCCACG-TGCTATTTCAATCATCGGTTTAAAGTCAGGAAC 1748 |||||||||| || ||| |||||||| | | |||||||||||||||||||||||||||| Sbjct 1 ATGGAACACACGTATGCCGGTCCACGAAG-TGTTTCAATCATCGGTTTAAAGTCAGGAAC 59 Query 1749 GCGAGATTTGACCGAGAACAATGAATGGGGACACTTGG 1786 ||||||||||| |||||||||||||||||||| |||| Sbjct 60 GCGAGATTTGATAGAGAACAATGAATGGGGACATTTGG 97 > Ahg905744 jgi|Araly1|905744|Al_scaffold_0003_2872 Length=1011 Score = 431 bits (233), Expect = 2e-119 Identities = 275/296 (93%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 1812 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCC 1871 |||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |||||| Sbjct 357 GGTGTACATAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCC 416 Query 1872 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAG 1931 |||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| Sbjct 417 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAAGGAGAGAACGCGGTCGCCATTAG 476 Query 1932 GATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTG 1991 |||||||| |||||| |||||||||||||||||| |||||||||||||||||||||| || Sbjct 477 GATGAAAGGAATGGGAAAGGGATTGATTTGGGTTCATGGAATTGGCGTAGGGAGATACTG 536 Query 1992 GATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATC 2051 |||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| ||||| Sbjct 537 GATGTCATTCGTTTCTCCACTCGGAGAGCCAATTCAAACGGAGTACCATATACCAAGATC 596 Query 2052 TTTCATGAAGGGGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG 2107 ||||||||||| |||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 597 TTTCATGAAGGAGGAGAAGAAGAAGAGCATGTTTGTGATTCTCGAGGAAGAGCCAG 652 Score = 159 bits (86), Expect = 9e-38 Identities = 105/114 (92%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1674 AGACAGTGGATCATACATGGAACACAGGTTTGCTGGTCCACGT-GCTATTTCAATCATCG 1732 |||||||||||||||||||||||||| || ||| ||||||||| || |||||||||||| Sbjct 246 AGACAGTGGATCATACATGGAACACACGTATGCCGGTCCACGTGGC-GTTTCAATCATCG 304 Query 1733 GTTTAAAGTCAGGAACGCGAGATTTGACCGAGAACAATGAATGGGGACACTTGG 1786 ||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 305 GTTTAAAGTCAGGAACGCGAGATTTGATAGAGAACAATGAATGGGGACATTTGG 358 > Ahg359611 jgi|Araly1|359611|fgenesh1_pg.C_scaffold_480000001 Length=771 Score = 370 bits (200), Expect = 4e-101 Identities = 266/296 (90%), Gaps = 12/296 (4%) Strand=Plus/Plus Query 1812 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCC 1871 ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| Sbjct 387 GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCC 446 Query 1872 TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAG 1931 ||||||||||| | | | |||||||||| |||| |||||||||||| ||||| Sbjct 447 TCTTACGTGGT-----A-C-A-----AGACACCAGAAGGAGAGAACGCGGTCGCCATTAG 494 Query 1932 GATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTG 1991 |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 495 GATGAAAGGAATGGGAAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATACTG 554 Query 1992 GATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATC 2051 |||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| ||||| Sbjct 555 GATGTCATTCGTTTCTCCACTCGGAGAGCCAATTCAAACGGAGTACCATATACCAAGATC 614 Query 2052 TTTCATGAAGGGGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG 2107 ||||||||||| |||||||||||||| |||| ||||||||||||||||||| |||| Sbjct 615 TTTCATGAAGGAGGAGAAGAAGAAGAGCATGTTGGTGATTCTCGAGGAAGAGCCAG 670 Score = 241 bits (130), Expect = 3e-62 Identities = 157/170 (92%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 1618 AACTTTAA-AACCGGAGATAATCGCATTTCAATTTTGGGTGTACTAACCGGATTACCAGA 1676 ||| |||| |||| |||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 220 AAC-TTAAGAACCAGAGATAATTGTATTTCAATTTTGGGTGTACTAACCGGATTACCAGA 278 Query 1677 CAGTGGATCATACATGGAACACAGGTTTGCTGGTCCACGTGCTATTTCAATCATCGGTTT 1736 ||||||||||||||||||||||| || ||| |||||||||| | |||||||||||||||| Sbjct 279 CAGTGGATCATACATGGAACACACGTATGCCGGTCCACGTGGTGTTTCAATCATCGGTTT 338 Query 1737 AAAGTCAGGAACGCGAGATTTGACCGAGAACAATGAATGGGGACACTTGG 1786 ||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 339 AAAGTCAGGAACGCGAGATTTGATAGAGAACAATGAATGGGGACATTTGG 388 > Ahg947994 jgi|Araly1|947994|scaffold_704223.1 Length=595 Score = 348 bits (188), Expect = 2e-94 Identities = 263/296 (89%), Gaps = 17/296 (6%) Strand=Plus/Plus Query 1813 GTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCCT 1872 |||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| Sbjct 234 GTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCCT 293 Query 1873 CTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAGG 1932 ||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| Sbjct 294 CTTACGTGGTACAAGACCTACTTTGAGACACCAGAAGGAGAGAACGCGGTCGCCATTAGG 353 Query 1933 ATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTGG 1992 ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 354 ATGAAAGGAATGGGAAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATACTGG 413 Query 1993 ATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATCT 2052 ||||| ||| |||||||||| |||||| | | | | ||||||| |||||| Sbjct 414 ATGTCATTCGTTTCTCCACTCGGAGAG-----T-A--C------C-ATATACCAAGATCT 458 Query 2053 TTCATGAAGG-GGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG 2107 |||||||||| ||| ||||||||||| |||| ||||||||||||||||||| |||| Sbjct 459 TTCATGAAGGAGGG-GAAGAAGAAGAGCATGTTGGTGATTCTCGAGGAAGAGCCAG 513 Score = 250 bits (135), Expect = 5e-65 Identities = 203/234 (87%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 1340 GCAAAGGTCTCAAATTTGAGATGTTTAGTGAAAATATTCCTTCCTTACTTGACGGTGATT 1399 |||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||| Sbjct 1 GCAAAGGTCTCAAATTTGAGATGTTTAGTGAAGATATTCCTTCCATACTCGACGGTGATT 60 Query 1400 CTTTGATTCCGGGGGAGCTTTATTACTTAACTAAAGACAAAACAGATTATGCTTG----- 1454 | ||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 61 CCTTGATTCTGGGGGAGCTTTATTACTTAACTAAGGACAAAACAGATTATGCTTGGTATA 120 Query 1455 CG----T-A-AA-GATTGACGAAGATGACTTTCCAGACCAAAAAGGTCTGAAGACTATAC 1507 | | | || |||||| || |||||| | |||||||| ||||||| |||||| |||| Sbjct 121 CCACAATCATAAAGATTGAAGATGATGACATACCAGACCAGAAAGGTCAGAAGACGATAC 180 Query 1508 TGAGAGTAGCGAGTCTTGGTCACGCACTGATCGTTTACGTTAACGGAGAGTACG 1561 ||||||||||| |||||||||||||| | |||||||||||||| ||||| |||| Sbjct 181 TGAGAGTAGCGGGTCTTGGTCACGCATTAATCGTTTACGTTAATGGAGAATACG 234 > Ahg943822 jgi|Araly1|943822|scaffold_700051.1 Length=2461 Score = 329 bits (178), Expect = 6e-89 Identities = 267/306 (87%), Gaps = 21/306 (7%) Strand=Plus/Plus Query 2650 TCCGATTCTGCCCTGGTGTCGGATCTAGGTTTTGGCCCTTTCTCTACGGTAGTTGTTAAT 2709 |||||| |||||||| | ||||||||||||||||||||||| ||||||||| ||||| || Sbjct 186 TCCGATCCTGCCCTGTTATCGGATCTAGGTTTTGGCCCTTTGTCTACGGTACTTGTTCAT 245 Query 2710 GTCCCTCTAATCGGTGGAGCGGCTCCGCCTCAGCCCCGCTTCAATTTAATGCCTCCGTCA 2769 ||||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 246 GTCCCTCTAATCGGTGGAGCGGCTCCGCCTCAGCCCCTCTTCAATT-----C-------A 293 Query 2770 AACTATGTCGCTGGTTTGGGTCGTGGGGCTGCAGGGTTTACTACCCGCTCCGATATTGGT 2829 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 294 AACTATGTCGCTGGTTTGGGTCGTGGGGCTACAGGGTTTACTACCCGCTCCGATATTGGT 353 Query 2830 CCTGCTCGTGCTAATGGCGATGGAAACGCTGACGTGAATCACAAGTTTGATGATTTTGAA 2889 |||||||||||| ||||||||| | || ||| | ||||||||||||||| |||||| Sbjct 354 CCTGCTCGTGCTGATGGCGATG-A--CG-TGA----A-TCACAAGTTTGATGACTTTGAA 404 Query 2890 GGGCATGATGCCGGATTGTTCGCTAATGCCGAGAGTGATGACCAAGACAAAGAGGCTGAT 2949 ||| ||||||| ||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct 405 GGGAATGATGCGGGATTGTTCGCTAATGCCGAGTGTGATGACGGAGACACAGAGGCTGAC 464 Query 2950 GCTATT 2955 || ||| Sbjct 465 GCCATT 470 Score = 213 bits (115), Expect = 6e-54 Identities = 123/127 (97%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 3021 AGAAATCGAGAATTACAGAGCCTCCAACCCTAAAGTTTCTGGGCAGTTTGTGGATTTGAC 3080 ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 494 AGACATCGAGAATTACAGAGCCTCCAACCCTAAAGTTTCTGAGCAGTTTGTGGATCTGAA 553 Query 3081 GAGAAAGTTGCATACTTTGTCTGAGGATGAATGGGATAGTATTCCAGAGATTGGGAATTA 3140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 554 GAGAAAGTTGCATACTTTGTCTGAGGATGAATGGGATAGTATTCCAGAGATTGGGAATTA 613 Query 3141 CTCGCAT 3147 ||||||| Sbjct 614 CTCGCAT 620 > Ahg952037 jgi|Araly1|952037|scaffold_31500001.1 Length=310 Score = 274 bits (148), Expect = 3e-72 Identities = 218/250 (87%), Gaps = 12/250 (5%) Strand=Plus/Plus Query 1326 GTCAGAGAAGACAAGCAAAGGTCTCAAATTTGAGATGTTTAGTGAAAATATTCCTTCCTT 1385 ||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | Sbjct 32 GTCCGAGAAGACAAGCAAAGGTCTCAAATTTGACATGTTTAGTGAAGATATTCCTTCCAT 91 Query 1386 ACTTGACGGTGATTCTTTGATTCCGGGGGAGCTTTATTACTTAACTAAAGACAAAACAGA 1445 ||| ||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 92 ACTCGACGGTGATTCCTTGATTCTGGGGGAGCTTTATTACTTAACTAAGGACAAAACAGA 151 Query 1446 TTATGCTTG-----C-----G--TAAAGATTGACGAAGATGACTTTCCAGACCAAAAAGG 1493 ||||||||| | | |||||||||| || |||||| | |||||||| ||||| Sbjct 152 TTATGCTTGGTATACCACAAGCATAAAGATTGAAGATGATGACATACCAGACCAGAAAGG 211 Query 1494 TCTGAAGACTATACTGAGAGTAGCGAGTCTTGGTCACGCACTGATCGTTTACGTTAACGG 1553 || |||||| ||||||||||||||| |||||||||||||| | |||||||||||||| || Sbjct 212 TCAGAAGACGATACTGAGAGTAGCGGGTCTTGGTCACGCATTAATCGTTTACGTTAATGG 271 Query 1554 AGAGTACGCA 1563 ||| |||||| Sbjct 272 AGAATACGCA 281 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 119336737585 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5