BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38630.1
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490627 jgi|Araly1|490627|fgenesh2_kg.7__60__AT4G38630.1 2034 0.0
> Ahg490627 jgi|Araly1|490627|fgenesh2_kg.7__60__AT4G38630.1
Length=1409
Score = 2034 bits (1101), Expect = 0.0
Identities = 1295/1384 (94%), Gaps = 31/1384 (2%)
Strand=Plus/Plus
Query 79 ACGATGGTTCTCGAGGCGACTATGATATGTATCGACAACTCCGAGTGGATGCGAAACGGA 138
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 49 ACGATGGTTCTCGAGGCGACTATGATATGCATCGACAACTCCGAGTGGATGCGAAACGGA 108
Query 139 GATTACTCTCCGTCTAGGTTACAGGCGCAAACGGAAGCTGTTAATCTTCTTTGCGGAGCC 198
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 109 GATTACTCTCCGTCTAGGTTACAGGCGCAAACGGAAGCTGTTAATCTTCTTTGTGGGGCC 168
Query 199 AAAACCCAGTCGAATCCGGAGAATACGGTGGGGATTTTGACAATGGCTGGCAAAGGAGTT 258
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 169 AAAACCCAGTCGAATCCGGAGAATACGGTGGGGATATTGACAATGGCTGGCAAAGGAGTT 228
Query 259 AGAGTATTGACTACTCCTACCTCTGATCTTGGCAAAATTCTGGCCTGTATGCACGGCCTT 318
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 AGAGTTTTGACTACGCCTACCTCTGATCTTGGCAAAATTCTGGCCTGTATGCACGGCCTT 288
Query 319 GATGTGGGAGGAGAGATCAACTTAACCGCAGCTATCCAGATCGCCCAGCTAGCTCTTAAG 378
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 289 GATGTTGGAGGAGAGATCAATTTAACAGCAGCTATCCAGATCGCCCAGCTAGCTCTTAAG 348
Query 379 CATCGCCAAAACAAGAATCAACGCCAAAGGATTATTGTTTTTGCTGGAAGTCCAATCAAG 438
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 349 CATCGCCAAAACAAGAATCAACGCCAACGGATTATTGTTTTTGCTGGAAGTCCAATCAAG 408
Query 439 TACGAGAAGAAGGCCCTAG-AGATAGTTGGAAAAAGGCTGAAGAAGAATAGTGTCTCTCT 497
||||| ||||||||||||| || ||||||| |||||||||||||||||||||||||||||
Sbjct 409 TACGAAAAGAAGGCCCTAGAAG-TAGTTGGCAAAAGGCTGAAGAAGAATAGTGTCTCTCT 467
Query 498 TGATATTGTCAATTTCGGGGAGGATGATGATGAGGAAAAGCCTCAGAAACTCGAGGCGCT 557
||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct 468 TGACATTGTCAATTTCGGGGAAGATGATGATGAGGAAAAGCCTCAGAAGCTGGAGGCCCT 527
Query 558 CCTTACAGCTGTGAATAACAATGACGGTAGCCACATTGTTCATGTTCCTTCTGGAGCCAA 617
|||||| || || |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 528 CCTTACTGCCGTCAATAACAACGACGGTAGCCACATTGTTCATGTTCCATCTGGAGCCAA 587
Query 618 TGCTCTCTCAGATGTGCTTCTCAGCACACCTGTATTCACGGGTGATGAGGGTGCAAGTGG 677
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 588 TGCTCTCTCAGATGTGCTTCTCAGCACACCTGTCTTCACGGGTGATGAGGGTGCAAGTGG 647
Query 678 CTATGTTTCTGCGGCAGCTGCTGCAGCGGCCGCAGGTGGGGACTTCGACTTTGGTGTGGA 737
|||||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||
Sbjct 648 GTATGTTTCTGCGGCAGCTGCTGCAGCTGCAGCAGGTGGGGACTTTGACTTTGGTGTAGA 707
Query 738 CCCAAATATCGATCCAGAACTTGCTCTTGCCCTTCGGGTCTCCATGGAGGAGGAGAGAGC 797
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 708 CCCAAATATCGATCCAGAGCTTGCTCTCGCCCTTCGGGTCTCCATGGAGGAGGAGAGAGC 767
Query 798 AAGACAAGAAGCTGCTGCCAAGAAGGCGGCCGATGAGGCAGGTCAGAAAGACAAAGATGG 857
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 768 AAGACAAGAGGCTGCTGCTAAGAAGGCAGCCGATGAGGCAGGTCAGAAAGACAAAGATGG 827
Query 858 GGACACAGCTTCCGCCTCACAGGAGACAGTTGCTAGGACAACTGACAAGAACGCTGAACC 917
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 828 GGACACAGCTTCCGCCTCACAGGAGACAGTTGCTAGGACAACTGAGAAGAACGCTGAACC 887
Query 918 AATGGATGAGGACAGTGCGTTGCTAGATCAGGCAATTGCTATGTCTGTTGGTGATGTGAA 977
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 888 AATGGATGAGGACAGTGCGCTGCTAGATCAGGCAATTGCTATGTCTGTAGGTGATGTGAA 947
Query 978 TATGTCAGAAGCGGCTGATGAGGACCAGGATCTGGCTTTAGCTCTGCAAATGTCAATGAG 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TATGTCAGAAGCGGCTGATGAGGACCAGGATCTGGCTTTAGCTCTGCAAATGTCAATGAG 1007
Query 1038 TGGGGAAGAGTCAAGTGAAGCTACAGGTGCTGGAAACAACCTCTTGGGAAATCAAGCCTT 1097
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1008 TGGGGAAGAGTCAAGTGAAGCTACAGGTGCTGGAAACAATCTCTTGGGAGATCAAGCCTT 1067
Query 1098 CATATCGTCTGTTCTCTCATCGCTTCCTGGGGTGGATCCAAATGATCCGGCAGTTAAAGA 1157
||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1068 CATATCGTCTGTTCTCTCATCGCTTCCTGGGGTAGATCCAAATGATCCAGCGGTTAAAGC 1127
Query 1158 ACTACTAGCGTCTCTGCCAGACGAGTCAAAG---CGTACCGAGGAGGAAGAGAGTAGTAG 1214
| ||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 1128 GTTGCTAGCGTCTCTGCCAGACGAGTCAAAGGTGCGGAACGAGGAGGAAGAGAGTAGTAG 1187
Query 1215 CAAAAAAGGCGAGGATGAGAAGAAGTGAAGAAGGATCTGAGAG-TCTCAATAAAAATTCC 1273
|||| || ||||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 1188 CAAA---GGTGAGGATGAGAAGAAGTGAAGAAGGAAGAGAGAGGTCTGAATAAAAATTCC 1244
Query 1274 TCTTGTTTCTTTGGTTTGATAGAGATTGGAACTGAATTTAACTAATCTCTCTGCCTTGTG 1333
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 1245 TCTTGTTTCTTTGGTTTGATAGAGATTGGGACTGATTTTAACTAATCTCTCTGCCTTATG 1304
Query 1334 AAATTTGtttttttctctctctctcGCCTTTTTATAATGTTGTTATTGTACGAGTCAA-G 1392
|| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 1305 AACTTTGTTTTTTT-------------------ATAATGTTGTTATTGTACGAGTCAAAG 1345
Query 1393 GACTAGCTTCCTTCTTAATTTTTATTGGACTTTATGTC-AATGGG-CTCTTAGAAAGTAA 1450
||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||
Sbjct 1346 GACTAGCTTCCTTCTTAATTTTTATCGGACTTTATGTCGAATGGGGCTCTTAGAAAGTAG 1405
Query 1451 GCCT 1454
||||
Sbjct 1406 GCCT 1409
Score = 84.2 bits (45), Expect = 2e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 6 CTAAAATCTAAATCTTGCCTTCCTGACTTTCTCTCTACGACAGAATTT 53
|||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 CTAAAATCTAAATCTTGCGTTCCTGACTTTCTCTCTACGACAGAATTT 48
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54964223535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5