BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38640.1
Length=2100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327819 jgi|Araly1|327819|fgenesh1_pm.C_scaffold_7000046 2667 0.0
Ahg493648 jgi|Araly1|493648|fgenesh2_kg.7__3081__AT4G38640.1 1509 0.0
> Ahg327819 jgi|Araly1|327819|fgenesh1_pm.C_scaffold_7000046
Length=1662
Score = 2667 bits (1444), Expect = 0.0
Identities = 1598/1672 (96%), Gaps = 11/1672 (1%)
Strand=Plus/Plus
Query 199 ATGGCGGCGGACGACGGCGACCCCACTAAATTCGCTGCAATCTACGACTCATCCTCTCCG 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGCGGACGACGGCGACCCCACTAAATTCGCTGCAATCTACGACTCATCCTCTCCG 60
Query 259 TCACACCCTCTTCTCTCTAAACCCTCCACGTCCGCTCTCGATTCTCCGCGTCGAAGTGAT 318
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGCACCCTCTTCTCTCTAAACCCTCCACGTCCGCTCTCGATTCTCCGCGTCGAAGTGAT 120
Query 319 CCCGAATCCGACCCAACTCAGTTTCTTCAGATCTCCTACAATTTTGGCCCAAGAACTTTC 378
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CCCGAATCCGACCCAACTCAGTTTCTTCAGATCTCCTACAATTTTGGCCCCAGAACTTTC 180
Query 379 AAGGACATCCCTTTCCTACTTCTCTTCGATCTTCTCGTACTCTCCACCTTTGGTTTTGGA 438
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGGACATCCCTTTCCTTCTTCTCTTCGATCTTCTCGTACTCTCCACCTTTGGTTTTGGA 240
Query 439 ATCTTCTCCATTTTTCATAGAAATAACGATTACGGGAACTCCTCTTCCTTCACCTACGAT 498
||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 241 ATCTTCTCCGTTTTCCATAGAAATAGCGATTACGGGAGCTCCTCTTCCTTCACCTACGAT 300
Query 499 TT-CACCTCTAGCTCCTGCGTCAAAAATTCTACCTTTACGAAAATTTCGGATGGGTACTA 557
|| || |||||||||||||||||||||||| ||||||||||||||||||||| || | ||
Sbjct 301 TTCCA-CTCTAGCTCCTGCGTCAAAAATTCCACCTTTACGAAAATTTCGGAT-GG-A-TA 356
Query 558 CTGGGCTTCTTCGAGTGTCATGTACGGCATGGTTTCTTCGTCTGATCCAGTCTTTGAGAA 617
|| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 357 -----CTAC-TCGAGTGTCATGTACGGTATGGTTTCTTCGTCTGATCCAGTCTTTGAGAA 410
Query 618 GGATTTGATCTGGACACTTGTTGTAACGCTTATTTTAAGCGTGCCCTTCTGTTTTAGCGT 677
|||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 411 GGATTTAATCTGGACCCTTGTTGTAACGCTCATCTTAAGCGTGCCCTTCTGTTTTAGCGT 470
Query 678 CCTGCTTTTGCTCAAACACTACACTAAGCAGATTGTTTATGCTTGTTTACCTCTCTTTGT 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CCTGCTTTTGCTCAAACACTACACTAAGCAGATTGTTTATGCTTGTTTACCTCTCTTTGT 530
Query 738 CCTTTTTCCCATCTTTTTCAATGTCTATTGGTTTGTCGCCTGTACTCTTAGCTCTTCTTG 797
|||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 531 CCTTTTCCCCATCTTTTTCAATCTCTATTGGTTTGTCGCTTGTACTCTTAGCTCTTCTTG 590
Query 798 TAGCGATGCCCTCCCTCTAGCTTACAGAATACTTGTCCTAGTCTTTGTTTTCTTGATCAT 857
||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 591 TAGTGACGCCCTCCCTCTAGCTTACAGAATTCTTGTCCTAGTCTTCGTTTTCTTGATCAT 650
Query 858 CGGGATCATTGTCTGGATCATAGTAGCTAATTGGCACAGAATTGATCTTACTATCCAAAT 917
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 651 CGGGATCATTGTCTGGATCATAGTAGCTAATTGGCACAGAATTGAGCTCACTATCCAAAT 710
Query 918 CATCAGTGTTGCATCTGATGCCTTGTCCAAAAATTTGAAACTTTTTGTTGTGCTGCCGCT 977
||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 711 CATCAGTGTTGCATCGGATGCCTTGTCCAAAAATTTGAAGCTTTTTGTTGTGTTGCCGCT 770
Query 978 GCTGACTCTCGGGTTAGTGGTGTACTATGCGCCGATTGTGGTGTTCTTGGTGTTTGCAAG 1037
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GCTGACTCTCGGGTTAGTGGTGTACTATGCGCCGATTGTGGTGTTCTTGGTGTTTGCAAA 830
Query 1038 GTTTAATGGGAAGTTTGTGCCGCGAGAGTTGGATGGTCAGTACTTTTGTGAGTGGAAAGA 1097
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 831 GTTTAATGGGAAGTTTGTGCCGCGAGAGTTGGATGGTCACTACTTTTGTGAGTGGAAGGA 890
Query 1098 AGATTCTTGGGTTCCTGCGTATTACGCTCTTGCCATTTTAACGATGATCTGGTCTCTTGC 1157
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 891 AGATTCTTGGGTTCCTGCGTATTACGCTCTTGCCATTTTAACGATGCTTTGGTCTCTTGC 950
Query 1158 TGTAATGGTGGAAATGCAAGTGTATGTGATAAGTGGAGCTATTGCTCAGTGGTATTTCTC 1217
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 951 TGTAATGGTGGAAATGCAAGTCTATGTGATAAGTGGAGCTATTGCGCAGTGGTATTTCTC 1010
Query 1218 CAAGGAAGACTCAATCCCTAAAAAATGCATCCGGAGTTCTTTGAGGAATGCATTTGGTCA 1277
|||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1011 TAAGGAAGACTCAGTGCCTAAAAAATGCATCCGGAGTTCTTTGAGGAACGCATTTGGTCA 1070
Query 1278 ATCCTTTGGTACGATATGTGTATCAGGACTTCTCATATGCATTGTTCGTGTGGTCCGGGC 1337
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1071 ATCCTTTGGTACAATATGTGTATCAGGACTTCTCATCTGCATTGTTCGTGTGGTCCGGGC 1130
Query 1338 AATTGTGGACAATGCAAGAGAAGAGAACACACAAGGAATAGTGAACATGGTTCTCCGTTG 1397
|||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||
Sbjct 1131 AATTGTGGACAATGCAAGAGAAGAGAACCCACAAGGGATAGTGAACTTGGTTCTCCGTTG 1190
Query 1398 CTGTGCAAACGCCTTACTTGGTGCCCTTGACTATCTCAACAAGTTCACCATCAACTTTGC 1457
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CTGCGCAAACGCCTTACTTGGAGCCCTTGACTATCTCAACAAGTTCACCATCAACTTTGC 1250
Query 1458 TGCAATAACAGGGGAAGCGTATTGCACCTCTGCGAAAATGACTTACGAGCTGTTAAGACG 1517
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1251 TGCAATAACAGGGGAAGCCTATTGCACCTCTGCGAAAATGACTTATGAGCTCTTAAGACG 1310
Query 1518 CAACCTACTGTCAGCTGTATTTGTCGAAACGGTTTCCACCAGAATCCTAACCGGAATAGT 1577
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 1311 CAACCTACTGTCAGCTGTATTTGTGGAAACGGTTTCCACCAGAATCCTGACCGGAATCGT 1370
Query 1578 CTTTGTCCTGTCAGCCGCATATGCAGTCGCGACATGGGCTGTTCTGAGAGGAGTGAGCAA 1637
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1371 CTTTGTCCTCTCAGCCGCATATGCAGTCGCGACATGGGCTGTTCTGAGAGGCGTGAGCAA 1430
Query 1638 CCTGGGTATAGATTCGTACGTGGTGGCTGTACTGGCGTGGGTGTTACTGATTGTGATATT 1697
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| | ||
Sbjct 1431 CCTGGGTATAGATTCGTACTTGGTGGCTATACTGGCGTGGCTGTTACTGATTGTGGTCTT 1490
Query 1698 GGCTTTCTTTGTACATGTTCTTGACGATGTGATTGACACAATCTATGTCTGTTACGCGAT 1757
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1491 GGCTTTCTTTGTACATGTTCTTGACGATGTGATAGACACAATCTATGTCTGTTACGCGAT 1550
Query 1758 TGATAGAGACAAAGGGGATGTATGTAAGCAGGAAGTTCACGAGGTTTATGTTCACTTGCC 1817
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1551 TGATAGAGACAAAGGGGATGTATGTAAGCAGGAAGTTCACGAGGTGTATGTTCACTTGCC 1610
Query 1818 TATCAGCAGAAGCACAAGATCTTCTCTCATCCCAAATGCTCTTAATGCATAG 1869
||| ||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 1611 TATAAGCAGAAGCACAAGATCTTCTCTAATCCCAACTGCTCTGAATGCATAG 1662
> Ahg493648 jgi|Araly1|493648|fgenesh2_kg.7__3081__AT4G38640.1
Length=1637
Score = 1509 bits (817), Expect = 0.0
Identities = 963/1031 (93%), Gaps = 20/1031 (2%)
Strand=Plus/Plus
Query 675 CGTCCTGCTTTTGCTCAAACACTACACTAAGCAGATTGTTTATGCTTGTTTACCTCTCTT 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 CGTCCTGCTTTTGCTCAAACACTACACTAAGCAGATTGTTTATGCTTGTTTACCTCTCTT 373
Query 735 TGTCCTTTTTCCCATCTTTTT-CAATGTCTATTGGTTTGTCGCCTGTACTCTTAGCTCTT 793
||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 374 TGTCCTTTTCCCCATCTTTTTTCAATGTCTATTGGTTTGTCGCTTGTACTCTTAGCTCTT 433
Query 794 CTTGTAGCGATGCCCTCCCTCTAGCTTACAGAATACTTGTCCTAGTCTTTGTTTTCTTGA 853
|||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 434 CTTGTAGCGACACCCTCCCTCTAGCTTACAGAATTCTTGTCCTAGTCTTCGTTTTCTTGA 493
Query 854 TCATCGGGATCATTGTCTGGATCATAGTAGCTAATTGGCACA-GAATTGATCTTACTATC 912
||||||||||| |||||||||||||||||||||||||||||| || |||| || ||||||
Sbjct 494 TCATCGGGATCGTTGTCTGGATCATAGTAGCTAATTGGCACAAGA-TTGAGCTCACTATC 552
Query 913 CAAATCATCAGTGTTGCATCTGATGCCTTGTCCAAAAATTTGAAACTTTTTGTTGTGCTG 972
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 553 CAAATCATCAGTGTTGCATCGGATGCCTTGTCCAAAAATTTGAAACTTTTTGTTGTGTTG 612
Query 973 CCGCTGCTGACTCTCGGGTTAGTGGTGTACTATGCGCCGATTGTGGTGTTCTTGGTGTTT 1032
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CCGCTGCTGATTCTCGGGCTAGTGGTGTACTATGCGCCGATTGTGGTGTTCTTGGTGTTT 672
Query 1033 GCAAGGTTTAATGGGAAGTTTGTGCCGCGAGAGTTGGATGGTCAGTACTTTTGTGAGTGG 1092
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 673 GCAAAGTTTAATGGGAAGTTTGTGCCGCGAGAGTTGGATGGTCACTACTTTTGTGAGTGG 732
Query 1093 AAAGAAGATTCTTGGGTTCCTGC--G--TATTACGCT-CTTGCCATTTTAACGATGATCT 1147
|| |||||||||||||||||||| | ||||| | | ||||||||||||||||||||||
Sbjct 733 AAGGAAGATTCTTGGGTTCCTGCCTGCCTATTATG-TGCTTGCCATTTTAACGATGATCT 791
Query 1148 GGTCTCTTGCTGTAATGGTGGAAATGCAAGTGTATGTGATAAGTGGAGCTATTGCTCAGT 1207
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 792 GGTCTCTTGCTGTAATGGTGGAAATGCACGTGTATGTGATAAGTGGAACTATTGCTCAGT 851
Query 1208 GGTATTTCTCCAAGGAAGACTCAATCCCTAAAAAA-TGCA-TCCGGAGTTCT-T----TG 1260
||||||||||||||||||||||||| || ||| || | || || | | |
Sbjct 852 GGTATTTCTCCAAGGAAGACTCAATGTCTCCAAATCTGTTGTT-GGC-TTATGTCAAATC 909
Query 1261 AGGAATGCATTTGGTCAATCCTTTGGTACGATATGTGTATCAGGACTTCTCATATGCATT 1320
| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 910 ATGAACGCATTTGGTCAATCCTTTGGTACAATATGTGTATCAGGACTTCTCATCTGCATT 969
Query 1321 GTTCGTGTGGTCCGGGCAATTGTGGACAATGCAAGAGAAGAGAACACACAAGGAATAGTG 1380
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 970 GTTCGTGTGGTCCGGGCAATTGTGGACAATGCAAGAGAAGAGAACCCACAAGGGATAGTG 1029
Query 1381 AACATGGTTCTCCGTTGCTGTGCAAACGCCTTACTTGGTGCCCTTGACTATCTCAACAAG 1440
||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1030 AACATGGTTCTCCTTTGCTGCGCAAACGCCTTACTTGGAGCCCTTGACTATCTCAACAAG 1089
Query 1441 TTCACCATC-AACTTTGCTGCAATAACAGGGGAAGCGTATTGCACCTCTGCGAAAATGAC 1499
||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1090 TTCACCATCGAA-TTTGCTGCAATAACAGGGGAAGCCTATTGCACCTCTGCAAAAATGAC 1148
Query 1500 TTACGAGCTGTTAAGACGCAACCTACTGTCAGCTGTATTTGTCGAAACGGTTTCCACCAG 1559
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1149 TTACGAGCTCTTAAGACGCAACCTACTGTCAGCTGAATTTGTCGAAACGGTTTCCACCAG 1208
Query 1560 AATCCTAACCGGAATAGTCTTTGTCCTGTCAGCCGCATATGCAGTCGCGACATGGGCTGT 1619
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1209 AATCCTAACCGGAATAGTCTTTGTCCTCTCAGCCGCATATGCAGTCGCGACATGGGCTGT 1268
Query 1620 TCTGAGAGGAGTGAGCAACCTGGGTATAGATTCGTACGTGGTGGCTGTACTGGCGTGGGT 1679
|||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |
Sbjct 1269 TCTGAGAGGAGTGAGCAACCTGGGTATAGATTCGTATGTGGTGGCTATACTCGCGTGGCT 1328
Query 1680 GTTACTGATTG 1690
|||||||||||
Sbjct 1329 GTTACTGATTG 1339
Score = 363 bits (196), Expect = 4e-99
Identities = 252/277 (91%), Gaps = 12/277 (4%)
Strand=Plus/Plus
Query 325 TCCGACCCAACTCAGTTTCTTCAGATCTCCTACAATTTTGGCCCAAGAACTTTCAAGGAC 384
||||| || |||||||||||||||| | ||| ||||||||||| |||||||||||||||
Sbjct 40 TCCGATCC-ACTCAGTTTCTTCAGA--T-CTATAATTTTGGCCCCAGAACTTTCAAGGAC 95
Query 385 ATCCCTTT-C--C-T--ACTTCTCTTCGATCTTCTCGTACTCTCCACCTTTGGTTTTGGA 438
|||||||| | | | |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 96 ATCCCTTTCCTACTTGAACTTCTCTTCGATCTTCTCGTACTCTCCACTTTTGGTTTCGGA 155
Query 439 ATCTTCTCCATTTTTCAT-AGAAATAACGATTACGGGAACTCCTCTTCCTTCACCTACGA 497
|||||||||||||| ||| ||||||| ||||||||||| |||||||||||||||||||||
Sbjct 156 ATCTTCTCCATTTT-CATTAGAAATAGCGATTACGGGAGCTCCTCTTCCTTCACCTACGA 214
Query 498 TTTCACCTCTAGCTCCTGCGTCAAAAATTCTACCTTTACGAAAATTTCGGATGGGTACTA 557
||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||
Sbjct 215 CTTCACCTCTAGCTCCTGCGTCAAAAATTCCACCTTTACGAAATTTTCGGATGGATACTA 274
Query 558 CTGGGCTTCTTCGAGTGTCATGTACGGCATGGTTTCT 594
|||||||||||| |||||||||||||| |||||||||
Sbjct 275 CTGGGCTTCTTCCAGTGTCATGTACGGTATGGTTTCT 311
Score = 104 bits (56), Expect = 3e-21
Identities = 58/59 (98%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1718 TTGACGATGTGATTGACACAATCTATGTCTGTTACGCGATTGATAGAGACAAAGGGGAT 1776
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 TTGAGGATGTGATTGACACAATCTATGTCTGTTACGCGATTGATAGAGACAAAGGGGAT 1395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78999168130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5