BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38650.1
Length=1980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490628 jgi|Araly1|490628|fgenesh2_kg.7__61__AT4G38650.1 2907 0.0
> Ahg490628 jgi|Araly1|490628|fgenesh2_kg.7__61__AT4G38650.1
Length=1928
Score = 2907 bits (1574), Expect = 0.0
Identities = 1814/1931 (94%), Gaps = 12/1931 (1%)
Strand=Plus/Plus
Query 1 AAAAACCACTTCGCATATAACAACATCATCACGTGAACTCACTCAATAGGTTCAGTGTTT 60
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACCCACTTCGCGTATAACAACATCATCACGTGAACTCACTCAATAGGTTCAGTGTTT 60
Query 61 CTGAC-ATATTGTTCCCTCTCTGAATGAAACTCTCCCAAATAGAGAATGGCCTAACCACC 119
||||| |||||||||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct 61 CTGACTATATTGTTCCCTCTCTGATTGAAACTCTCCCAAATATAGATTGGCCTAACCACC 120
Query 120 TATCCAACCGCATCAAGGCACTTGGTTTCATC-CCCT--T-GATTTCTCTCtttttttCT 175
|||||||| |||||| ||||| |||||||| |||| | || || |||||||||||||
Sbjct 121 CATCCAACCACATCAACACACTTCGTTTCATCGCCCTGATCGAATT-TCTCTTTTTTTCT 179
Query 176 TTTCCTATCGCAGGATTTTGTGTTCTTGTTTTGAAT-ATGAAATGTTCGT-CGATGTGTT 233
||||||||| || ||| |||||||||||| || | ||||||| || | | |||| ||
Sbjct 180 TTTCCTATCTCAAAATTGTGTGTTCTTGTTATG-GTCATGAAATACTCTTAC-ATGTATT 237
Query 234 GTTTGATCCTCTTGGCCCTTTCTCTCCTCACCGCCTTCACTCTTGCTTCTTCGTCAAATG 293
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 238 GTTTGATTTTCTTGGCCCTTTCTCTCCTCACCGCCTTCACTCCTGCTTCTTCGTCAAATG 297
Query 294 GTATAGATGGACCTTTCTACGACTCTACTGCCTACACAGAGTGTAGAGCCGAAGCAGAGA 353
|| |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 298 GTCTAGATGGACCATTCTACGACTCTACCGCCTACACAGAGTGTAGAGCAGAAGCAGAGA 357
Query 354 AGCCACTATACAATGGAGGAATGCTGAAGGACCAAAAGCCTTCCGTCCCAGGCAAAGACT 413
||||||| ||||| ||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct 358 AGCCACTGTACAACGGAGGAATGCTGAAGGACCAAAAGCCTTCTGTCTCAGGCAGAGACT 417
Query 414 CTCTCACAGGCATTGGTGCTCATTACACACCAACTTACATATTGCACAATCTCACACAGA 473
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 418 CTCTCACAGGCATTGGTGCTCGTTACACACCAACTTACATATTGCACAATCTCACGCAGA 477
Query 474 ACACCATCTATTGCTTCTCCATATGGGTGAAGATAGAGGCTGGTGCTGCATCAGCTCATG 533
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 478 ACACCATCTATTGCTTCTCCATTTGGGTGAAGATAGAGGCTGGTGCTGCATCAGCTCGTG 537
Query 534 TAAGAGCAAGGCTGAGAGCAGACAACGCCACATTAAACTGCGTCGGTTCTGTAACTGCCA 593
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 538 TAAGGGCAAGGCTGAGAGCAGACAACGCCACTTTAAACTGCGTCGGTTCTGTAACTGCCA 597
Query 594 AACATGGTTGCTGGTCTTTCCTCAAAGGAGGATTCCTTCTTGATTCTCCTTGTAAACAAT 653
|||||||||||||||||||||||||||| || ||||||||||||||||||| ||| ||||
Sbjct 598 AACATGGTTGCTGGTCTTTCCTCAAAGGCGGCTTCCTTCTTGATTCTCCTTCTAACCAAT 657
Query 654 CCATCCTCTTCTTTGAGACATCAGAGGACGATGGTAAGATCCAATTACAAGTGACGAGTG 713
||||||||||||||||||||||| | |||||| | |||||||||||||||||| ||||||
Sbjct 658 CCATCCTCTTCTTTGAGACATCAAACGACGATAGCAAGATCCAATTACAAGTGGCGAGTG 717
Query 714 CCTCTCTTCAGCCATTCACGCAGGAGCAATGGAGGAACAACCAAGATTACTTCATAAATA 773
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 718 CTTCTCTTCAGCCCTTCACGCAGGAGCAATGGAGGAACAACCAAGATTACTTCATTAATA 777
Query 774 CCGCGAGAAAACGAGCAGTGACAATTCACGTGTCAAAAGAAAACGGAGAGAGCGTTGAAG 833
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 778 CCGCGAGAAAACGAGCAGTGACAATTCACGTGTCCGAAGAAAACGGAGAGAGCGTTGAAG 837
Query 834 GAGCAGAGGTGACAGTAGAGCAGATCTCTAAAGACTTCTCCATTGGATCTGCCATCTCCA 893
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 GAGCAGAGGTGACAGTAGAGCAGATCTCTAAAGACTTCCCCATTGGATCTGCCATCTCCA 897
Query 894 AAACTATCCTTGGAAACATTCCTTACCAAGAATGGTTCGTCAAGAGATTCGACGCCACGG 953
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 898 AAACTATTCTTGGAAACATTCCTTACCAAGAATGGTTCGTCAAGAGATTTGACGCCACTG 957
Query 954 TATTCGAGAACGAGCTGAAATGGTACGCGACGGAGCCCGATCAAGGCAAACTCAACTACA 1013
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 958 TGTTCGAGAACGAGCTGAAATGGTACGCGACGGAGCCCGATCAAGGCAAACTCAATTACA 1017
Query 1014 CATTGGCTGATAAGATGATGAATTTCGTCAGAGCCAACAGAATCATCGCTCGCGGTCACA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1018 CATTGGCTGATAAGATGATGAATTTCGTCAGAGCCAACAGAATCATCGCTCGCGGCCACA 1077
Query 1074 ACATATTCTGGGAGGATCCCAAATACAATCCCGATTGGGTTCGTAATCTAACCGGCGAAG 1133
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1078 ACATCTTCTGGGAGGATCCCAAATACAATCCCAATTGGGTTCGTAATCTAACCGGCCAAG 1137
Query 1134 ATCTCCGGTCGGCGGTTAACCGGCGAATCAAGAGTCTGATGACTCGGTACAGAGGAGAGT 1193
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1138 ATCTCCGGTCGGCGGTTAACCGGCGAATCAAGAGTCTAATGACTCGGTACAGAGGGGAGT 1197
Query 1194 TCGTGCATTGGGACGTGAGCAACGAGATGCTTCACTTTGACTTCTACGAGACTCGACTGG 1253
||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1198 TCGTGCACTGGGACGTGAGCAACGAGATGCTTCACTTCGACTTCTACGAGAGTCGACTGG 1257
Query 1254 GGAAGAACGCGTCGTACGGATTCTTCGCCGCGGCTCGTGAGATTGACTCATTGGCGACTC 1313
|||||||||| |||||||| |||||||| ||||| |||||||||||||| |||||||||
Sbjct 1258 GGAAGAACGCCTCGTACGGGTTCTTCGCGGCGGCGCGTGAGATTGACTCGCTGGCGACTC 1317
Query 1314 TGTTCTTCAATGATTTCAACGTGGTGGAGACTTGCAGCGACGAGAAGTCAACGGTTGACG 1373
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1318 TGTTCTTTAATGATTTCAACGTGGTGGAGACTTGCAGCGACGAGAAGTCGACGGTTGACG 1377
Query 1374 AATACATCGCGAGGGTGAGGGAACTCCAACGGTACGACGGCGTAAGGATGGACGGAATAG 1433
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 1378 AATACATCGCGAGGGTGAGGGAACTCCAACGGTACGACGGCATAAGGATGGATGGAATCG 1437
Query 1434 GTCTCGAGGGTCACTTCACGACGCCAAACGTAGCGCTGATGAGAGCCATCCTCGATAAAC 1493
||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||| ||||
Sbjct 1438 GTCTCGAGGGTCACTTCACGACGCCGAACGTGGCGCTAATGAGAGCAATCCTCGACAAAC 1497
Query 1494 TCGCTACGCTCCAGCTCCCAATCTGGCTCACCGAGATTGATATCAGCAGCAGCCTCGACC 1553
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1498 TCGCGACGCTCCAGCTCCCAATCTGGCTCACCGAAATTGATATCAGCAGCAGCCTCGACC 1557
Query 1554 ACCGCTCTCAGGCGATTTATTTGGAGCAAGTGTTACGTGAAGGATTCTCGCACCCATCGG 1613
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 ACCCCACGCAGGCGATTTATTTGGAGCAAGTGTTACGTGAAGGATTCTCGCACCCATCGG 1617
Query 1614 TAAACGGTATAATGCTATGGACCGCACTTCACCCAAACGGCTGTTACCAAATGTGCCTCA 1673
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1618 TGAACGGTATAATGCTATGGACCGCACTTCACCCAAACGGTTGTTACCAAATGTGCCTCA 1677
Query 1674 CTGACGATAAATTCCGGAACCTTCCAGCCGGAGACGTGGTGGATCAGAAGCTTCTAGAAT 1733
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 CCGACGATAAATTCCGGAACCTTCCAGCCGGAGACGTGGTGGATCAGAAGCTTCTAGAAT 1737
Query 1734 GGAAGACTGGTGAAGTT-AAGGCGACGACAGATGACCATGGTTCCTTTAGCTTCTTCGGC 1792
|||||||| |||| ||| |||||||| || || |||||||||||||| ||||||||||||
Sbjct 1738 GGAAGACTCGTGA-GTTTAAGGCGACAACCGACGACCATGGTTCCTTCAGCTTCTTCGGC 1796
Query 1793 TTTTTGGGAGAGTATAGAGTTGGCATCATGTACCAAGGTAAGACGGTTAATTCGTCTTTC 1852
||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 1797 TTTTTGGGAGAGTATAGAGTTGGCATCATATACCAAGGTAAAATGGTTAATTCGTCTTTC 1856
Query 1853 TCGTTATCTCAAGGCCCTGAGACCAAACATGTGAGGCTTCAAATCTAACTTAACGGCTCT 1912
||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 1857 TCGTTATCTCAAGGCCCTGAGACCAAACATGTGAGGCTTCAAATCTAACACAGCGACTCC 1916
Query 1913 ATGTTTAAGAT 1923
|||||||||||
Sbjct 1917 ATGTTTAAGAT 1927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74428338730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5