BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38660.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943828 jgi|Araly1|943828|scaffold_700057.1 1631 0.0
> Ahg943828 jgi|Araly1|943828|scaffold_700057.1
Length=1083
Score = 1631 bits (883), Expect = 0.0
Identities = 1010/1071 (94%), Gaps = 9/1071 (1%)
Strand=Plus/Plus
Query 214 AAAGAA-CCATGATGAATCTTTCTTCTCGTCGCGCCTCTTCCACTCTCACATTGAGCTTC 272
||| || |||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 AAAAAACCCATAATGGATCTTTCTTCTCGTCGCGCCTCTTCCACTCTCACATTGAGCTTC 73
Query 273 ACT-GTTCTCCTTTTAGCTTCCACAGGTTCGTATGGCTCAACATTCACATTCGCTAATCG 331
| | |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 74 A-TAGTTCTCCTCCTAGCTTCCACAGGTTCGTATGGCTCAACATTTACATTCGCTAATCG 132
Query 332 GTGCGGCTACACCGTATGGCCTGGAATCCTATCGAATGCTGGCTCACCTACTCTCTCCAC 391
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 133 CTGCGGCTTCACCGTATGGCCTGGAATCCTAGCGAATGCTGGCTCACCTACTCTCTCCAC 192
Query 392 CACCGGATTT-GAGCTCCCTAAAGGCACCTCTCGCTCTCTCCAAGCTCCCACCGGTTGGT 450
|||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 193 CACCGG-TTTCGAGCTCCCTAAAGGCACCTCCCGCTCTCTCCAAGCTCCCACCGGTTGGT 251
Query 451 CCGGTCGATTCTGGGCTCGTACCGGTTGCAAGTTCGACAGTTCTGGCTCCGGTACATGCA 510
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 252 CCGGTCGATTCTGGGCTCGAACCGGTTGCAAGTTCGACGGTTCTGGCTCCGGTACATGCA 311
Query 511 AAACCGGTGACTGCGGCTCCAACGCTGTCGAATGCGCCGGGCTTGGTGCCGCACCGCCTG 570
||||||||| |||||||||||| || ||||||||||||| ||||| |||||||||||||
Sbjct 312 CAACCGGTGATTGCGGCTCCAACACTATCGAATGCGCCGGACTTGGCGCCGCACCGCCTG 371
Query 571 TAACTCTCGCGGAGTTCACTCTAGGCACTGGCGGCGATGATTTCTACGACGTTAGTCTCG 630
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 372 TAACTCTCGCCGAGTTCACTCTAGGCACTGGCGGCGACGATTTCTACGACGTTAGTCTCG 431
Query 631 TCGACGGTTACAACATTCCGATGATAGTTGAAGTCGCCGGTGGATCTGGGCAGTGCGCTT 690
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TCGACGGTTACAACATACCGATGATAGTTGAAGTCGCCGGTGGATCTGGGCAGTGCGCTT 491
Query 691 CTACCGGATGCACTACGGATCTTAACATTCAGTGCCCTGCTGAGCTGCGTTTCGGCGACG 750
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 492 CTACCGGATGCACTTCGGATCTTAACACTCAGTGCCCTGCTGAGCTGCGTTTCGGCGACG 551
Query 751 GAGACGCTTGCAAAAGCGCGTGTTTAGCGTTTCGGAGTCCTGAATACTGTTGCAGCGGCG 810
|||||||||| |||||||||||| ||||||||| |||||||| || |||||||||||||
Sbjct 552 GAGACGCTTGTAAAAGCGCGTGTGAAGCGTTTCGAAGTCCTGAGTATTGTTGCAGCGGCG 611
Query 811 CGTATGCTACACCTTCTAGTTGTCGGCCTTCCGTGTATTCGGAGATGTTTAAAGCCGCGT 870
|||| ||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||
Sbjct 612 CGTACGCTACACCTTCTACTTGTCGGCCTTCCGTCTACTCGGAGATGTTCAAAGCCGCGT 671
Query 871 GTCCTCGCTCCTATAGCTACGCTTACGACGATGCTACGAGCACTTTCACTTGCGCCGGTG 930
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 GTCCTCGCTCGTATAGCTACGCTTACGACGATGCTACGAGCACTTTCACTTGCGCCGGTG 731
Query 931 GAGATTATACGGTGACGTTTTGCCCTTCTTCCCCTAGTCAAAAATCGACTAGCTACTCCC 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 GAGATTATACGGTGACGTTTTGCCCTTCTTCCCCTAGTCAAAAATCGACTAGCTACTCCC 791
Query 991 CTCCAGTGACAGACTCGTCGTCGACCTCACAAGGTTCCGATCCTGTGCCTGGTTCTGATA 1050
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 792 CTCCAGTGACAGACTCGTCGACGACCTCACAAGGTTCGGATCCTGTGCCTGGTTCTGATA 851
Query 1051 CTGGTTA--C-GCTGGTCAGGGTCAACAGACTCCAGGTCAAGGTAATGTGTACGGGTCAC 1107
| ||||| | || |||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 852 CGGGTTATGCCGCCGGTCAGGGTCAACAGACTCCAGTTCAAGGTAATGTGTACGGGTCTC 911
Query 1108 AGGGGACTGGGTCGGAGATGGGTACGGGTGAGACCATGTTACAAGACGGATCATGGATGG 1167
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 912 AGGGTACTGGGTCGGAGATGGGTACGGGTGAGACCATGTTACAGGACGGATCATGGATGG 971
Query 1168 CTGGTTTGGCCATGGGAGAGGCAAGCAGACCAGCCGGCGTTTCATTGACAGTGCTGCTTG 1227
||||||||||||||||||| |||||||||||||||||| ||||||| || |||| ||||
Sbjct 972 CTGGTTTGGCCATGGGAGACTCAAGCAGACCAGCCGGCGCTTCATTGGCAATGCTACTTG 1031
Query 1228 CTGCATTTACTTTTCCGTTTATTTTCTCGTAGCATCATCGTCTTTAGATTT 1278
|||| ||||||||||||||||| ||||||||||||| ||||||| ||||||
Sbjct 1032 CTGCGTTTACTTTTCCGTTTATCTTCTCGTAGCATCCTCGTCTT-AGATTT 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5